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Search of human proteins with 148743776
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148743776 V-set and transmembrane domain containing 2 [Homo
sapiens]
(236 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148743776 V-set and transmembrane domain containing 2 [Homo s... 472 e-133
gi|226437599 V-set and transmembrane domain containing 2B [Homo ... 134 7e-32
gi|239757226 PREDICTED: V-set and transmembrane domain containin... 134 7e-32
gi|239751732 PREDICTED: V-set and transmembrane domain containin... 134 7e-32
gi|239746233 PREDICTED: V-set and transmembrane domain containin... 134 7e-32
gi|18079321 V-set and transmembrane domain containing 2 like [Ho... 119 2e-27
gi|41152506 prostaglandin F2 receptor negative regulator [Homo s... 39 0.003
gi|38372919 basigin isoform 1 precursor [Homo sapiens] 37 0.011
gi|238624147 neuroplastin isoform c precursor [Homo sapiens] 35 0.043
gi|6912646 neuroplastin isoform b precursor [Homo sapiens] 35 0.043
gi|56090548 insulin-like growth factor binding protein-like 1 [H... 35 0.073
gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens] 33 0.16
gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens] 33 0.16
gi|154426280 V-set and immunoglobulin domain containing 4 isofor... 32 0.36
gi|6005958 V-set and immunoglobulin domain containing 4 isoform ... 32 0.36
gi|166197658 butyrophilin, subfamily 1, member A1 [Homo sapiens] 32 0.36
gi|56788397 myelin oligodendrocyte glycoprotein isoform beta4 pr... 32 0.48
gi|56788395 myelin oligodendrocyte glycoprotein isoform alpha4 p... 32 0.48
gi|56788393 myelin oligodendrocyte glycoprotein isoform beta5 pr... 32 0.48
gi|56788391 myelin oligodendrocyte glycoprotein isoform beta2 pr... 32 0.48
gi|56788389 myelin oligodendrocyte glycoprotein isoform alpha3 p... 32 0.48
gi|56788387 myelin oligodendrocyte glycoprotein isoform beta3 pr... 32 0.48
gi|56788385 myelin oligodendrocyte glycoprotein isoform beta1 pr... 32 0.48
gi|56788383 myelin oligodendrocyte glycoprotein isoform alpha2 p... 32 0.48
gi|56788381 myelin oligodendrocyte glycoprotein isoform alpha1 p... 32 0.48
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 32 0.62
gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42... 31 0.81
gi|87299628 biorientation of chromosomes in cell division 1-like... 31 1.1
gi|55953133 immunoglobulin superfamily, member 3 isoform 1 [Homo... 31 1.1
gi|55953135 immunoglobulin superfamily, member 3 isoform 2 [Homo... 31 1.1
>gi|148743776 V-set and transmembrane domain containing 2 [Homo
sapiens]
Length = 236
Score = 472 bits (1215), Expect = e-133
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MMGIFLVYVGFVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLE 60
MMGIFLVYVGFVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLE
Sbjct: 1 MMGIFLVYVGFVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLE 60
Query: 61 IQWWFLRGPEDLDPGAEGAGAQVELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKK 120
IQWWFLRGPEDLDPGAEGAGAQVELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKK
Sbjct: 61 IQWWFLRGPEDLDPGAEGAGAQVELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKK 120
Query: 121 DEGLYECRVTDANYGELQEHKAQAYLKVNANSHARRMQAFEASPMWLQDMKPRKNVSAAI 180
DEGLYECRVTDANYGELQEHKAQAYLKVNANSHARRMQAFEASPMWLQDMKPRKNVSAAI
Sbjct: 121 DEGLYECRVTDANYGELQEHKAQAYLKVNANSHARRMQAFEASPMWLQDMKPRKNVSAAI 180
Query: 181 PSSIHGSANQRTHSTSSPQVVAKIPKQSPQSGARIATSHGLSVLLLVCGFVKGALL 236
PSSIHGSANQRTHSTSSPQVVAKIPKQSPQSGARIATSHGLSVLLLVCGFVKGALL
Sbjct: 181 PSSIHGSANQRTHSTSSPQVVAKIPKQSPQSGARIATSHGLSVLLLVCGFVKGALL 236
>gi|226437599 V-set and transmembrane domain containing 2B [Homo
sapiens]
Length = 285
Score = 134 bits (337), Expect = 7e-32
Identities = 81/180 (45%), Positives = 112/180 (62%), Gaps = 16/180 (8%)
Query: 25 SQAKFTEFPRNVTATEGQNVEMSCAFQ-SGSASVYLEIQWWFLRGP-----EDLDPGAEG 78
+ A FTE P++VT EG ++EM CAF+ SG+ S LEIQWW+L+ P +L G
Sbjct: 26 ADAAFTEVPKDVTVREGDDIEMPCAFRASGATSYSLEIQWWYLKEPPRELLHELALSVPG 85
Query: 79 AGAQVELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRVTDANYGELQ 138
A ++V + D TKISTV+VQGNDISH+L++S VR +DEG+YECRV+D + + Q
Sbjct: 86 ARSKVT-------NKDATKISTVRVQGNDISHRLRLSAVRLQDEGVYECRVSDYSDDDTQ 138
Query: 139 EHKAQAYLKVNANSHARRMQAFEASPMWLQDMKPRKNVSAAIPSSIHGSANQRTHSTSSP 198
EHKAQA L+V + MQA EA +Q PR++ A+ ++ + A RT TS P
Sbjct: 139 EHKAQAMLRVLSRFAPPNMQAAEA-VSHIQSSGPRRHGPASAANANNAGAASRT--TSEP 195
>gi|239757226 PREDICTED: V-set and transmembrane domain containing
2B [Homo sapiens]
Length = 285
Score = 134 bits (337), Expect = 7e-32
Identities = 81/180 (45%), Positives = 112/180 (62%), Gaps = 16/180 (8%)
Query: 25 SQAKFTEFPRNVTATEGQNVEMSCAFQ-SGSASVYLEIQWWFLRGP-----EDLDPGAEG 78
+ A FTE P++VT EG ++EM CAF+ SG+ S LEIQWW+L+ P +L G
Sbjct: 26 ADAAFTEVPKDVTVREGDDIEMPCAFRASGATSYSLEIQWWYLKEPPRELLHELALSVPG 85
Query: 79 AGAQVELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRVTDANYGELQ 138
A ++V + D TKISTV+VQGNDISH+L++S VR +DEG+YECRV+D + + Q
Sbjct: 86 ARSKVT-------NKDATKISTVRVQGNDISHRLRLSAVRLQDEGVYECRVSDYSDDDTQ 138
Query: 139 EHKAQAYLKVNANSHARRMQAFEASPMWLQDMKPRKNVSAAIPSSIHGSANQRTHSTSSP 198
EHKAQA L+V + MQA EA +Q PR++ A+ ++ + A RT TS P
Sbjct: 139 EHKAQAMLRVLSRFAPPNMQAAEA-VSHIQSSGPRRHGPASAANANNAGAASRT--TSEP 195
>gi|239751732 PREDICTED: V-set and transmembrane domain containing
2B [Homo sapiens]
Length = 285
Score = 134 bits (337), Expect = 7e-32
Identities = 81/180 (45%), Positives = 112/180 (62%), Gaps = 16/180 (8%)
Query: 25 SQAKFTEFPRNVTATEGQNVEMSCAFQ-SGSASVYLEIQWWFLRGP-----EDLDPGAEG 78
+ A FTE P++VT EG ++EM CAF+ SG+ S LEIQWW+L+ P +L G
Sbjct: 26 ADAAFTEVPKDVTVREGDDIEMPCAFRASGATSYSLEIQWWYLKEPPRELLHELALSVPG 85
Query: 79 AGAQVELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRVTDANYGELQ 138
A ++V + D TKISTV+VQGNDISH+L++S VR +DEG+YECRV+D + + Q
Sbjct: 86 ARSKVT-------NKDATKISTVRVQGNDISHRLRLSAVRLQDEGVYECRVSDYSDDDTQ 138
Query: 139 EHKAQAYLKVNANSHARRMQAFEASPMWLQDMKPRKNVSAAIPSSIHGSANQRTHSTSSP 198
EHKAQA L+V + MQA EA +Q PR++ A+ ++ + A RT TS P
Sbjct: 139 EHKAQAMLRVLSRFAPPNMQAAEA-VSHIQSSGPRRHGPASAANANNAGAASRT--TSEP 195
>gi|239746233 PREDICTED: V-set and transmembrane domain containing
2B [Homo sapiens]
Length = 285
Score = 134 bits (337), Expect = 7e-32
Identities = 81/180 (45%), Positives = 112/180 (62%), Gaps = 16/180 (8%)
Query: 25 SQAKFTEFPRNVTATEGQNVEMSCAFQ-SGSASVYLEIQWWFLRGP-----EDLDPGAEG 78
+ A FTE P++VT EG ++EM CAF+ SG+ S LEIQWW+L+ P +L G
Sbjct: 26 ADAAFTEVPKDVTVREGDDIEMPCAFRASGATSYSLEIQWWYLKEPPRELLHELALSVPG 85
Query: 79 AGAQVELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRVTDANYGELQ 138
A ++V + D TKISTV+VQGNDISH+L++S VR +DEG+YECRV+D + + Q
Sbjct: 86 ARSKVT-------NKDATKISTVRVQGNDISHRLRLSAVRLQDEGVYECRVSDYSDDDTQ 138
Query: 139 EHKAQAYLKVNANSHARRMQAFEASPMWLQDMKPRKNVSAAIPSSIHGSANQRTHSTSSP 198
EHKAQA L+V + MQA EA +Q PR++ A+ ++ + A RT TS P
Sbjct: 139 EHKAQAMLRVLSRFAPPNMQAAEA-VSHIQSSGPRRHGPASAANANNAGAASRT--TSEP 195
>gi|18079321 V-set and transmembrane domain containing 2 like [Homo
sapiens]
Length = 204
Score = 119 bits (299), Expect = 2e-27
Identities = 60/133 (45%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Query: 23 LSSQAKFTEFPRNVTATEGQNVEMSCAFQ-SGSASVYLEIQWWFLRGPEDLDPGAEGAGA 81
+S A FTE P ++TA G++VEM+C+F+ SGS S LEIQWW++R D A
Sbjct: 37 VSGHALFTETPHDMTARTGEDVEMACSFRGSGSPSYSLEIQWWYVRSHRDWTDKQAWASN 96
Query: 82 QVELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRVTDANYGELQEHK 141
Q++ D + TKIS VKV G++ISHKL++S+V+ DEG YECRV D + G+ + HK
Sbjct: 97 QLKASQQEDAGKEATKISVVKVVGSNISHKLRLSRVKPTDEGTYECRVIDFSDGKARHHK 156
Query: 142 AQAYLKVNANSHA 154
+AYL+V ++
Sbjct: 157 VKAYLRVQPGENS 169
>gi|41152506 prostaglandin F2 receptor negative regulator [Homo
sapiens]
Length = 879
Score = 39.3 bits (90), Expect = 0.003
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 33 PRNVTATEGQNVEMSCAFQSGSA-SVYLEIQWWFLRGPEDLDPGAEGAGAQVELLPDRDP 91
P+NV+ EG+ ++++C + A V E+ W F R P+ P G++V DRD
Sbjct: 284 PKNVSVAEGKELDLTCNITTDRADDVRPEVTWSFSRMPDSTLP-----GSRVLARLDRDS 338
Query: 92 ---DSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRVT 130
S +S V + S+ L + V K++ G Y C V+
Sbjct: 339 LVHSSPHVALSHVDAR----SYHLLVRDVSKENSGYYYCHVS 376
Score = 31.6 bits (70), Expect = 0.62
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 12/115 (10%)
Query: 33 PRNVTATEGQNVEMSCAFQSGSA-SVYLEIQWWFLRGPEDLDPGAEGAGAQVE--LLPDR 89
P +++ EG+ E+ C S S +L + W RGP A + L ++
Sbjct: 154 PPSLSLREGEPFELRCTAASASPLHTHLALLWEVHRGPARRSVLALTHEGRFHPGLGYEQ 213
Query: 90 DPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRVTD-----ANYGELQE 139
S ++ TV G+D +++L +S+ D+G Y C V++ N+ E+QE
Sbjct: 214 RYHSGDVRLDTV---GSD-AYRLSVSRALSADQGSYRCIVSEWIAEQGNWQEIQE 264
>gi|38372919 basigin isoform 1 precursor [Homo sapiens]
Length = 385
Score = 37.4 bits (85), Expect = 0.011
Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 27/135 (20%)
Query: 1 MMGIFLVYVGFVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLE 60
M V +GF G S A F + P + G +VE+ C S E
Sbjct: 1 MAAALFVLLGFALLGT----HGASGAAGFVQAPLSQQRWVGGSVELHC---EAVGSPVPE 53
Query: 61 IQWWFL-RGPEDLDPGAEGAGAQVELLPDRDPDSDGTKISTVKVQGNDISHK---LQISK 116
IQWWF +GP D +Q+ DG ++ V + H + I
Sbjct: 54 IQWWFEGQGPND-------TCSQLW---------DGARLDRVHIHATYHQHAASTISIDT 97
Query: 117 VRKKDEGLYECRVTD 131
+ ++D G YECR ++
Sbjct: 98 LVEEDTGTYECRASN 112
>gi|238624147 neuroplastin isoform c precursor [Homo sapiens]
Length = 394
Score = 35.4 bits (80), Expect = 0.043
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 22/133 (16%)
Query: 22 GLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWWFLRGPEDLDPGAEGAGA 81
G + A F + P + T G E+ C EIQWW+ A
Sbjct: 26 GAAQNAGFVKSPMSETKLTGDAFELYCDVVGSPTP---EIQWWY---------------A 67
Query: 82 QVELLPDRDPDSDGTKISTVKVQ---GNDISHKLQISKVRKKDEGLYECRVT-DANYGEL 137
+V DG + V V G++ L+I+++ +D G YECR + D +L
Sbjct: 68 EVNRAESFRQLWDGARKRRVTVNTAYGSNGVSVLRITRLTLEDSGTYECRASNDPKRNDL 127
Query: 138 QEHKAQAYLKVNA 150
+++ + +++ A
Sbjct: 128 RQNPSITWIRAQA 140
>gi|6912646 neuroplastin isoform b precursor [Homo sapiens]
Length = 398
Score = 35.4 bits (80), Expect = 0.043
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 22/133 (16%)
Query: 22 GLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWWFLRGPEDLDPGAEGAGA 81
G + A F + P + T G E+ C EIQWW+ A
Sbjct: 26 GAAQNAGFVKSPMSETKLTGDAFELYCDVVGSPTP---EIQWWY---------------A 67
Query: 82 QVELLPDRDPDSDGTKISTVKVQ---GNDISHKLQISKVRKKDEGLYECRVT-DANYGEL 137
+V DG + V V G++ L+I+++ +D G YECR + D +L
Sbjct: 68 EVNRAESFRQLWDGARKRRVTVNTAYGSNGVSVLRITRLTLEDSGTYECRASNDPKRNDL 127
Query: 138 QEHKAQAYLKVNA 150
+++ + +++ A
Sbjct: 128 RQNPSITWIRAQA 140
>gi|56090548 insulin-like growth factor binding protein-like 1 [Homo
sapiens]
Length = 278
Score = 34.7 bits (78), Expect = 0.073
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 21/121 (17%)
Query: 33 PRNVTATEGQNVEMSCAFQSGSASVYLEIQWWFLRGPEDLDPGAEGAGAQVELLPDRDPD 92
PR+V G V +SC ++ V I W + EG A EL
Sbjct: 161 PRSVHNVTGAQVGLSCEVRAVPTPV---ITW------RKVTKSPEGTQALEEL------P 205
Query: 93 SDGTKISTVKVQGNDISHK----LQISKVRKKDEGLYECRVTDANYGELQEHKAQAYLKV 148
D I+ V+V+G H+ + I+ +RK+DEG+Y+C + GE + H L +
Sbjct: 206 GDHVNIA-VQVRGGPSDHEATAWILINPLRKEDEGVYQCHAANM-VGEAESHSTVTVLDL 263
Query: 149 N 149
+
Sbjct: 264 S 264
>gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens]
Length = 230
Score = 33.5 bits (75), Expect = 0.16
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 22/116 (18%)
Query: 24 SSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWWFLRGPEDLDPGAEGAGAQV 83
S+ ++ + PR + G V+M C S S +V W + D +P Q+
Sbjct: 42 SACSRIWQSPRFIARKRGFTVKMHCYMNSASGNVS-----WLWKQEMDENP------QQL 90
Query: 84 ELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRVTDANYGELQE 139
+L R +S ++T+ +QG +R +D G+Y C+ N E+ +
Sbjct: 91 KLEKGRMEESQNESLATLTIQG-----------IRFEDNGIYFCQQKCNNTSEVYQ 135
>gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens]
Length = 229
Score = 33.5 bits (75), Expect = 0.16
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 22/116 (18%)
Query: 24 SSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWWFLRGPEDLDPGAEGAGAQV 83
S+ ++ + PR + G V+M C S S +V W + D +P Q+
Sbjct: 41 SACSRIWQSPRFIARKRGFTVKMHCYMNSASGNVS-----WLWKQEMDENP------QQL 89
Query: 84 ELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRVTDANYGELQE 139
+L R +S ++T+ +QG +R +D G+Y C+ N E+ +
Sbjct: 90 KLEKGRMEESQNESLATLTIQG-----------IRFEDNGIYFCQQKCNNTSEVYQ 134
>gi|154426280 V-set and immunoglobulin domain containing 4 isoform 2
[Homo sapiens]
Length = 305
Score = 32.3 bits (72), Expect = 0.36
Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 21/107 (19%)
Query: 31 EFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWWFLRGPEDLDPGAEGAGAQVELLPDRD 90
E P +VT +V + C + + ++W RG + +
Sbjct: 24 EVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQRGSDPVTIFLR------------- 70
Query: 91 PDSDGTKISTVKVQGN-DISHK------LQISKVRKKDEGLYECRVT 130
DS G I K QG +SHK LQ+S + D Y C VT
Sbjct: 71 -DSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVT 116
>gi|6005958 V-set and immunoglobulin domain containing 4 isoform 1
[Homo sapiens]
Length = 399
Score = 32.3 bits (72), Expect = 0.36
Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 21/107 (19%)
Query: 31 EFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWWFLRGPEDLDPGAEGAGAQVELLPDRD 90
E P +VT +V + C + + ++W RG + +
Sbjct: 24 EVPESVTGPWKGDVNLPCTYDPLQGYTQVLVKWLVQRGSDPVTIFLR------------- 70
Query: 91 PDSDGTKISTVKVQGN-DISHK------LQISKVRKKDEGLYECRVT 130
DS G I K QG +SHK LQ+S + D Y C VT
Sbjct: 71 -DSSGDHIQQAKYQGRLHVSHKVPGDVSLQLSTLEMDDRSHYTCEVT 116
>gi|166197658 butyrophilin, subfamily 1, member A1 [Homo sapiens]
Length = 526
Score = 32.3 bits (72), Expect = 0.36
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 33 PRNVTATEGQNVEMSCAFQSGSASVYLEIQWWFLRGPEDLDPGAEGAGAQVELLPDRDPD 92
P + A G++ E+ C +++ +LE++W+ + + +G + E +P+
Sbjct: 35 PEPILAVVGEDAELPCRLSPNASAEHLELRWFRKKVSPAVLVHRDGREQEAEQMPEY--R 92
Query: 93 SDGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRV-TDANYGELQEHKAQAYL 146
T + +G L+I VR D+G Y C D +Y E H A L
Sbjct: 93 GRATLVQDGIAKGR---VALRIRGVRVSDDGEYTCFFREDGSYEEALVHLKVAAL 144
>gi|56788397 myelin oligodendrocyte glycoprotein isoform beta4
precursor [Homo sapiens]
Length = 171
Score = 32.0 bits (71), Expect = 0.48
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 11/129 (8%)
Query: 11 FVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWW---FLR 67
F+ +L V + Q + + A G VE+ C G + +E+ W+ F R
Sbjct: 16 FLLLLLLQVSSSYAGQFRVIGPRHPIRALVGDEVELPCRISPGKNATGMEVGWYRPPFSR 75
Query: 68 GPEDLDPGAEGAGAQVELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYEC 127
G + G D+ P+ G + +K + L+I VR DEG + C
Sbjct: 76 VVHLYRNGKDQDG-------DQAPEYRG-RTELLKDAIGEGKVTLRIRNVRFSDEGGFTC 127
Query: 128 RVTDANYGE 136
D +Y E
Sbjct: 128 FFRDHSYQE 136
>gi|56788395 myelin oligodendrocyte glycoprotein isoform alpha4
precursor [Homo sapiens]
Length = 171
Score = 32.0 bits (71), Expect = 0.48
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 11/129 (8%)
Query: 11 FVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWW---FLR 67
F+ +L V + Q + + A G VE+ C G + +E+ W+ F R
Sbjct: 16 FLLLLLLQVSSSYAGQFRVIGPRHPIRALVGDEVELPCRISPGKNATGMEVGWYRPPFSR 75
Query: 68 GPEDLDPGAEGAGAQVELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYEC 127
G + G D+ P+ G + +K + L+I VR DEG + C
Sbjct: 76 VVHLYRNGKDQDG-------DQAPEYRG-RTELLKDAIGEGKVTLRIRNVRFSDEGGFTC 127
Query: 128 RVTDANYGE 136
D +Y E
Sbjct: 128 FFRDHSYQE 136
>gi|56788393 myelin oligodendrocyte glycoprotein isoform beta5
precursor [Homo sapiens]
Length = 213
Score = 32.0 bits (71), Expect = 0.48
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 11/129 (8%)
Query: 11 FVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWW---FLR 67
F+ +L V + Q + + A G VE+ C G + +E+ W+ F R
Sbjct: 16 FLLLLLLQVSSSYAGQFRVIGPRHPIRALVGDEVELPCRISPGKNATGMEVGWYRPPFSR 75
Query: 68 GPEDLDPGAEGAGAQVELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYEC 127
G + G D+ P+ G + +K + L+I VR DEG + C
Sbjct: 76 VVHLYRNGKDQDG-------DQAPEYRG-RTELLKDAIGEGKVTLRIRNVRFSDEGGFTC 127
Query: 128 RVTDANYGE 136
D +Y E
Sbjct: 128 FFRDHSYQE 136
>gi|56788391 myelin oligodendrocyte glycoprotein isoform beta2
precursor [Homo sapiens]
Length = 206
Score = 32.0 bits (71), Expect = 0.48
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 11/129 (8%)
Query: 11 FVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWW---FLR 67
F+ +L V + Q + + A G VE+ C G + +E+ W+ F R
Sbjct: 16 FLLLLLLQVSSSYAGQFRVIGPRHPIRALVGDEVELPCRISPGKNATGMEVGWYRPPFSR 75
Query: 68 GPEDLDPGAEGAGAQVELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYEC 127
G + G D+ P+ G + +K + L+I VR DEG + C
Sbjct: 76 VVHLYRNGKDQDG-------DQAPEYRG-RTELLKDAIGEGKVTLRIRNVRFSDEGGFTC 127
Query: 128 RVTDANYGE 136
D +Y E
Sbjct: 128 FFRDHSYQE 136
>gi|56788389 myelin oligodendrocyte glycoprotein isoform alpha3
precursor [Homo sapiens]
Length = 224
Score = 32.0 bits (71), Expect = 0.48
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 11/129 (8%)
Query: 11 FVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWW---FLR 67
F+ +L V + Q + + A G VE+ C G + +E+ W+ F R
Sbjct: 16 FLLLLLLQVSSSYAGQFRVIGPRHPIRALVGDEVELPCRISPGKNATGMEVGWYRPPFSR 75
Query: 68 GPEDLDPGAEGAGAQVELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYEC 127
G + G D+ P+ G + +K + L+I VR DEG + C
Sbjct: 76 VVHLYRNGKDQDG-------DQAPEYRG-RTELLKDAIGEGKVTLRIRNVRFSDEGGFTC 127
Query: 128 RVTDANYGE 136
D +Y E
Sbjct: 128 FFRDHSYQE 136
>gi|56788387 myelin oligodendrocyte glycoprotein isoform beta3
precursor [Homo sapiens]
Length = 229
Score = 32.0 bits (71), Expect = 0.48
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 11/129 (8%)
Query: 11 FVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWW---FLR 67
F+ +L V + Q + + A G VE+ C G + +E+ W+ F R
Sbjct: 16 FLLLLLLQVSSSYAGQFRVIGPRHPIRALVGDEVELPCRISPGKNATGMEVGWYRPPFSR 75
Query: 68 GPEDLDPGAEGAGAQVELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYEC 127
G + G D+ P+ G + +K + L+I VR DEG + C
Sbjct: 76 VVHLYRNGKDQDG-------DQAPEYRG-RTELLKDAIGEGKVTLRIRNVRFSDEGGFTC 127
Query: 128 RVTDANYGE 136
D +Y E
Sbjct: 128 FFRDHSYQE 136
>gi|56788385 myelin oligodendrocyte glycoprotein isoform beta1
precursor [Homo sapiens]
Length = 252
Score = 32.0 bits (71), Expect = 0.48
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 11/129 (8%)
Query: 11 FVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWW---FLR 67
F+ +L V + Q + + A G VE+ C G + +E+ W+ F R
Sbjct: 16 FLLLLLLQVSSSYAGQFRVIGPRHPIRALVGDEVELPCRISPGKNATGMEVGWYRPPFSR 75
Query: 68 GPEDLDPGAEGAGAQVELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYEC 127
G + G D+ P+ G + +K + L+I VR DEG + C
Sbjct: 76 VVHLYRNGKDQDG-------DQAPEYRG-RTELLKDAIGEGKVTLRIRNVRFSDEGGFTC 127
Query: 128 RVTDANYGE 136
D +Y E
Sbjct: 128 FFRDHSYQE 136
>gi|56788383 myelin oligodendrocyte glycoprotein isoform alpha2
precursor [Homo sapiens]
Length = 208
Score = 32.0 bits (71), Expect = 0.48
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 11/129 (8%)
Query: 11 FVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWW---FLR 67
F+ +L V + Q + + A G VE+ C G + +E+ W+ F R
Sbjct: 16 FLLLLLLQVSSSYAGQFRVIGPRHPIRALVGDEVELPCRISPGKNATGMEVGWYRPPFSR 75
Query: 68 GPEDLDPGAEGAGAQVELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYEC 127
G + G D+ P+ G + +K + L+I VR DEG + C
Sbjct: 76 VVHLYRNGKDQDG-------DQAPEYRG-RTELLKDAIGEGKVTLRIRNVRFSDEGGFTC 127
Query: 128 RVTDANYGE 136
D +Y E
Sbjct: 128 FFRDHSYQE 136
>gi|56788381 myelin oligodendrocyte glycoprotein isoform alpha1
precursor [Homo sapiens]
Length = 247
Score = 32.0 bits (71), Expect = 0.48
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 11/129 (8%)
Query: 11 FVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWW---FLR 67
F+ +L V + Q + + A G VE+ C G + +E+ W+ F R
Sbjct: 16 FLLLLLLQVSSSYAGQFRVIGPRHPIRALVGDEVELPCRISPGKNATGMEVGWYRPPFSR 75
Query: 68 GPEDLDPGAEGAGAQVELLPDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYEC 127
G + G D+ P+ G + +K + L+I VR DEG + C
Sbjct: 76 VVHLYRNGKDQDG-------DQAPEYRG-RTELLKDAIGEGKVTLRIRNVRFSDEGGFTC 127
Query: 128 RVTDANYGE 136
D +Y E
Sbjct: 128 FFRDHSYQE 136
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 31.6 bits (70), Expect = 0.62
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 135 GELQEHKAQAYLKVNANSHARRMQAFEASPMWLQDMKPRKNV---SAAIPSSIHGSANQR 191
G+++E A A S R + + P+ ++ P +N+ S+ + S R
Sbjct: 35 GKMEEAAAGA----TKASSRREAEEMKLEPLQEREPAPEENLTWSSSGGDEKVLPSIPLR 90
Query: 192 THSTSSPQVVAKIPKQSPQSGARIATSHGLS 222
HS+SSP + P+ PQ AR + GLS
Sbjct: 91 CHSSSSPVCPRRKPRPRPQPRARSRSQPGLS 121
>gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42
precursor [Homo sapiens]
Length = 2012
Score = 31.2 bits (69), Expect = 0.81
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 24/110 (21%)
Query: 27 AKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWWFLRGPEDLDPGAEGAGAQVELL 86
A T +P AT+GQ EMSC + ++W ED ++
Sbjct: 788 AMITSYPNTTLATQGQKKEMSCTAHGEKPII---VRW----EKED------------RII 828
Query: 87 PDRDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRVTDANYGE 136
+P+ +ST +V G ++ LQI ++D G + C + +YGE
Sbjct: 829 ---NPEMARYLVSTKEV-GEEVISTLQILPTVREDSGFFSCHAIN-SYGE 873
Score = 29.3 bits (64), Expect = 3.1
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 35/114 (30%)
Query: 17 LYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQWWFLRGPEDLDPGA 76
LYV+Q L K T PR V ++ G V +SC S + + E+ W+ R E L+PG
Sbjct: 308 LYVKQPL----KATISPRKVKSSVGSQVSLSC---SVTGTEDQELSWY--RNGEILNPG- 357
Query: 77 EGAGAQVELLPDRDPDSDGTKISTVKVQGNDISHK-LQISKVRKKDEGLYECRV 129
V++ G I+H+ L + + K D G Y+C V
Sbjct: 358 ----------------------KNVRITG--INHENLIMDHMVKSDGGAYQCFV 387
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 30.8 bits (68), Expect = 1.1
Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 2/112 (1%)
Query: 89 RDPDSDGTKISTVKVQGNDISHKLQISKVRKKDEGLYECRVT--DANYGELQEHKAQAYL 146
++ D +G + T +GN+I H + + ++ EG+ C D+ G + EH
Sbjct: 1861 KEEDEEGEDVVTSTGRGNEIGHASTCTGLGEESEGVLICESAEGDSQIGTVVEHVEAEAG 1920
Query: 147 KVNANSHARRMQAFEASPMWLQDMKPRKNVSAAIPSSIHGSANQRTHSTSSP 198
N++ + + + +D + + SS+ + + + T P
Sbjct: 1921 AAIMNANENNVDSMSGTEKGSKDTDICSSAKGIVESSVTSAVSGKDEVTPVP 1972
>gi|55953133 immunoglobulin superfamily, member 3 isoform 1 [Homo
sapiens]
Length = 1214
Score = 30.8 bits (68), Expect = 1.1
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 102 KVQGNDISHKLQISKVRKKDEGLYECRVTD---ANYGELQ---EHKAQAYLKVNANSHAR 155
+VQ N S L I RK+DEG YEC VT+ A GE Q E +A + + A
Sbjct: 508 QVQPNSFS--LGIFNSRKEDEGQYECHVTEWVRAVDGEWQIVGERRASTPISITALEMGF 565
Query: 156 RMQAFEASP 164
+ A +P
Sbjct: 566 AVTAISRTP 574
Score = 29.3 bits (64), Expect = 3.1
Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 25/137 (18%)
Query: 11 FVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQW--WFLRG 68
F S L V +S+Q + T + TEG ++ + C QW +
Sbjct: 5 FPVLSCLAVLGVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSS 64
Query: 69 PEDLDPGAEGAGAQVELLPDRDPDSD---------GTKISTVKVQGNDISHKLQISKVRK 119
PE +V+++ D G KI +VQGN S L I+ ++
Sbjct: 65 PE----------REVQIVSTMDSSFPYAIYTQRVRGGKIFIERVQGN--STLLHITDLQA 112
Query: 120 KDEGLYECRV--TDANY 134
+D G YEC TD Y
Sbjct: 113 RDAGEYECHTPSTDKQY 129
>gi|55953135 immunoglobulin superfamily, member 3 isoform 2 [Homo
sapiens]
Length = 1194
Score = 30.8 bits (68), Expect = 1.1
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 102 KVQGNDISHKLQISKVRKKDEGLYECRVTD---ANYGELQ---EHKAQAYLKVNANSHAR 155
+VQ N S L I RK+DEG YEC VT+ A GE Q E +A + + A
Sbjct: 488 QVQPNSFS--LGIFNSRKEDEGQYECHVTEWVRAVDGEWQIVGERRASTPISITALEMGF 545
Query: 156 RMQAFEASP 164
+ A +P
Sbjct: 546 AVTAISRTP 554
Score = 29.3 bits (64), Expect = 3.1
Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 25/137 (18%)
Query: 11 FVFFSVLYVQQGLSSQAKFTEFPRNVTATEGQNVEMSCAFQSGSASVYLEIQW--WFLRG 68
F S L V +S+Q + T + TEG ++ + C QW +
Sbjct: 5 FPVLSCLAVLGVVSAQRQVTVQEGPLYRTEGSHITIWCNVSGYQGPSEQNFQWSIYLPSS 64
Query: 69 PEDLDPGAEGAGAQVELLPDRDPDSD---------GTKISTVKVQGNDISHKLQISKVRK 119
PE +V+++ D G KI +VQGN S L I+ ++
Sbjct: 65 PE----------REVQIVSTMDSSFPYAIYTQRVRGGKIFIERVQGN--STLLHITDLQA 112
Query: 120 KDEGLYECRV--TDANY 134
+D G YEC TD Y
Sbjct: 113 RDAGEYECHTPSTDKQY 129
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,651,533
Number of Sequences: 37866
Number of extensions: 380940
Number of successful extensions: 2004
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 1726
Number of HSP's gapped (non-prelim): 335
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.