Guide to the Human Genome
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Name: VSTM2B Sequence: fasta or formatted (285aa) NCBI GI: 239746233
Description:

PREDICTED: V-set and transmembrane domain containing 2B

Referenced in:

Additional Immunoglobulin-related Receptors

Other entries for this name:
alt mRNA [285aa] V-set and transmembrane domain containing 2B
alt mRNA [285aa] PREDICTED: V-set and transmembrane domain containing 2B
alt mRNA [285aa] PREDICTED: V-set and transmembrane domain containing 2B
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.1         43           6
 C cysteine            0.7          2           1
 D aspartate           4.9         14           3
 E glutamate           4.9         14           1
 F phenylalanine       1.8          5           1
 G glycine             6.3         18           1
 H histidine           3.5         10           1
 I isoleucine          2.1          6           1
 K lysine              2.8          8           1
 L leucine            11.6         33           4
 M methionine          1.4          4           1
 N asparagine          2.5          7           2
 P proline             8.1         23           3
 Q glutamine           3.5         10           1
 R arginine            7.4         21           2
 S serine              9.5         27           2
 T threonine           5.6         16           3
 V valine              5.6         16           1
 W tryptophan          0.7          2           2
 Y tyrosine            2.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: V-set and transmembrane domain containin... 
VSTM2B                1.000   V-set and transmembrane domain containing 2B 
VSTM2B                1.000   PREDICTED: V-set and transmembrane domain containin...
VSTM2B                1.000   PREDICTED: V-set and transmembrane domain containin...
VSTM2A                0.203   V-set and transmembrane domain containing 2 
VSTM2L                0.186   V-set and transmembrane domain containing 2 like [Ho...
NPTN                  0.041   neuroplastin isoform c precursor 
NPTN                  0.041   neuroplastin isoform b precursor 
GNAS                  0.035   GNAS complex locus XLas 
BTN1A1                0.032   butyrophilin, subfamily 1, member A1 
FLJ37078              0.032   hypothetical protein LOC222183 
SCN4B                 0.028   sodium channel, voltage-gated, type IV, beta isoform...
TMPRSS13              0.028   transmembrane protease, serine 13 
MUC17                 0.028   mucin 17 
OTX1                  0.028   orthodenticle homeobox 1 
LOC100293375          0.026   PREDICTED: hypothetical protein 
LOC442366             0.026   PREDICTED: hypothetical protein 
LOC442366             0.026   PREDICTED: hypothetical protein 
SOBP                  0.026   sine oculis binding protein homolog 
GAP43                 0.024   growth associated protein 43 isoform 1 
GAP43                 0.024   growth associated protein 43 isoform 2 
PTGFRN                0.024   prostaglandin F2 receptor negative regulator 
KLF16                 0.022   BTE-binding protein 4 
CASKIN1               0.022   CASK interacting protein 1 
MAZ                   0.022   MYC-associated zinc finger protein isoform 2 
MAZ                   0.022   MYC-associated zinc finger protein isoform 1 
FOXI3                 0.022   forkhead box I3 
PRPF40A               0.022   formin binding protein 3 
GUCY1A2               0.022   guanylate cyclase 1, soluble, alpha 2 
WNK2                  0.022   WNK lysine deficient protein kinase 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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