Guide to the Human Genome
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Name: VSIG4 Sequence: fasta or formatted (305aa) NCBI GI: 154426280
Description:

V-set and immunoglobulin domain containing 4 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {399aa} V-set and immunoglobulin domain containing 4 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         16           2
 C cysteine            2.6          8           2
 D aspartate           6.2         19           2
 E glutamate           5.2         16           1
 F phenylalanine       1.6          5           1
 G glycine             7.2         22           1
 H histidine           2.6          8           1
 I isoleucine          4.9         15           2
 K lysine              4.6         14           1
 L leucine            10.2         31           4
 M methionine          2.6          8           1
 N asparagine          2.6          8           2
 P proline             4.9         15           1
 Q glutamine           5.6         17           2
 R arginine            3.9         12           1
 S serine              7.5         23           2
 T threonine           8.9         27           2
 V valine              7.5         23           2
 W tryptophan          1.6          5           1
 Y tyrosine            4.3         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   V-set and immunoglobulin domain containing 4 isofor... 
VSIG4                 0.530   V-set and immunoglobulin domain containing 4 isoform ...
HAPLN3                0.035   hyaluronan and proteoglycan link protein 3 
HAPLN4                0.028   hyaluronan and proteoglycan link protein 4 
PVRL3                 0.027   poliovirus receptor-related 3 
GPA33                 0.025   transmembrane glycoprotein A33 precursor 
BTN1A1                0.025   butyrophilin, subfamily 1, member A1 
HAPLN1                0.023   hyaluronan and proteoglycan link protein 1 
PILRA                 0.018   paired immunoglobulin-like type 2 receptor alpha iso...
CD47                  0.017   CD47 antigen isoform 3 precursor 
CD47                  0.017   CD47 antigen isoform 2 precursor 
CD47                  0.017   CD47 antigen isoform 1 precursor 
ICAM5                 0.017   intercellular adhesion molecule 5 precursor 
ASAM                  0.017   adipocyte-specific adhesion molecule 
IGSF3                 0.017   immunoglobulin superfamily, member 3 isoform 1 [Homo...
IGSF3                 0.017   immunoglobulin superfamily, member 3 isoform 2 [Homo...
VTCN1                 0.015   V-set domain containing T cell activation inhibitor ...
MOG                   0.015   myelin oligodendrocyte glycoprotein isoform beta4 pr...
MOG                   0.015   myelin oligodendrocyte glycoprotein isoform alpha4 p...
MOG                   0.015   myelin oligodendrocyte glycoprotein isoform beta5 pr...
MOG                   0.015   myelin oligodendrocyte glycoprotein isoform beta2 pr...
MOG                   0.015   myelin oligodendrocyte glycoprotein isoform alpha3 p...
MOG                   0.015   myelin oligodendrocyte glycoprotein isoform beta3 pr...
MOG                   0.015   myelin oligodendrocyte glycoprotein isoform beta1 pr...
MOG                   0.015   myelin oligodendrocyte glycoprotein isoform alpha2 p...
MOG                   0.015   myelin oligodendrocyte glycoprotein isoform alpha1 p...
PVRL1                 0.015   poliovirus receptor-related 1 isoform 3 
PVRL1                 0.015   poliovirus receptor-related 1 isoform 2 
PVRL1                 0.015   poliovirus receptor-related 1 isoform 1 
VSTM2A                0.012   V-set and transmembrane domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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