Guide to the Human Genome
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Name: ALKBH5 Sequence: fasta or formatted (394aa) NCBI GI: 148539642
Description:

alkB, alkylation repair homolog 5

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         43          10
 C cysteine            1.5          6           1
 D aspartate           5.6         22           1
 E glutamate           8.4         33           3
 F phenylalanine       2.8         11           2
 G glycine             5.1         20           2
 H histidine           2.5         10           1
 I isoleucine          4.6         18           2
 K lysine              6.3         25           1
 L leucine             6.1         24           2
 M methionine          1.3          5           1
 N asparagine          2.3          9           2
 P proline             6.3         25           2
 Q glutamine           3.6         14           2
 R arginine           10.2         40           3
 S serine              9.4         37           3
 T threonine           2.3          9           1
 V valine              6.6         26           2
 W tryptophan          0.5          2           1
 Y tyrosine            3.8         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alkB, alkylation repair homolog 5 
FAM9A                 0.025   family with sequence similarity 9, member A 
EN1                   0.020   engrailed homeobox 1 
C10orf140             0.017   hypothetical protein LOC387640 
DEAF1                 0.014   deformed epidermal autoregulatory factor 1 
LOC100294411          0.014   PREDICTED: similar to deformed epidermal autoregula...
SOX3                  0.014   SRY (sex determining region Y)-box 3 
SLC12A2               0.013   solute carrier family 12 (sodium/potassium/chloride t...
FOXE1                 0.013   forkhead box E1 
LBXCOR1               0.013   LBXCOR1 homolog 
FAM48B1               0.013   hypothetical protein LOC100130302 
POU4F1                0.013   POU domain, class 4, transcription factor 1 
C14orf4               0.013   chromosome 14 open reading frame 4 
ALKBH8                0.013   alkB, alkylation repair homolog 8 
BSN                   0.013   bassoon protein 
FAM63B                0.013   hypothetical protein LOC54629 isoform b 
LOC642587             0.013   hypothetical protein LOC642587 
MAZ                   0.012   MYC-associated zinc finger protein isoform 2 
MAZ                   0.012   MYC-associated zinc finger protein isoform 1 
HOXD13                0.012   homeobox D13 
FOXD1                 0.012   forkhead box D1 
FBRS                  0.012   fibrosin 
LOC100291609          0.012   PREDICTED: hypothetical protein XP_002346061 
FAM63B                0.012   hypothetical protein LOC54629 isoform a 
CCDC55                0.011   coiled-coil domain containing 55 isoform 1 
SP9                   0.011   Sp9 transcription factor homolog 
LOC100292370          0.011   PREDICTED: hypothetical protein 
NKX6-1                0.011   NK6 transcription factor related, locus 1 
ARID3A                0.011   AT rich interactive domain 3A (BRIGHT- like) protein ...
PHOX2B                0.011   paired-like homeobox 2b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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