PTCHD1 4406

Name: PTCHD1	Sequence: fasta or formatted (888aa)		NCBI GI: 148271104
Description: patched domain containing 1		Referenced in: Hedgehog and Related Pathways
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.0 53 2 C cysteine 2.5 22 2 D aspartate 3.5 31 2 E glutamate 5.1 45 2 F phenylalanine 6.6 59 2 G glycine 4.1 36 2 H histidine 2.5 22 2 I isoleucine 6.3 56 2 K lysine 5.0 44 3 L leucine 11.1 99 2 M methionine 2.0 18 1 N asparagine 4.6 41 2 P proline 3.2 28 2 Q glutamine 2.8 25 2 R arginine 4.7 42 2 S serine 8.3 74 3 T threonine 7.1 63 2 V valine 8.4 75 2 W tryptophan 1.1 10 1 Y tyrosine 5.1 45 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 patched domain containing 1 C6orf138 0.439 hypothetical protein LOC442213 PTCHD3 0.093 patched domain containing 3 NPC1L1 0.037 Niemann-Pick C1-like protein 1 isoform 2 NPC1 0.036 Niemann-Pick disease, type C1 precursor PTCH1 0.032 patched isoform S PTCH1 0.032 patched isoform S PTCH1 0.032 patched isoform S PTCH1 0.032 patched isoform S PTCH1 0.032 patched isoform L' PTCH1 0.032 patched isoform M PTCH1 0.032 patched isoform L NPC1L1 0.026 Niemann-Pick C1-like protein 1 isoform 1 PTCH2 0.022 patched 2 HMGCR 0.010 3-hydroxy-3-methylglutaryl-Coenzyme A reductase iso... HMGCR 0.010 3-hydroxy-3-methylglutaryl-Coenzyme A reductase isofo... SCAP 0.008 SREBF chaperone protein DISP1 0.006 dispatched A XPR1 0.004 xenotropic and polytropic retrovirus receptor isofor... TYW3 0.003 tRNA-yW synthesizing protein 3 homolog isoform 1 [Ho... PKD2 0.003 polycystin 2 GPRC5A 0.003 G protein-coupled receptor, family C, group 5, member... ZCRB1 0.003 zinc finger CCHC-type and RNA binding motif 1 PKD2L2 0.003 polycystic kidney disease 2-like 2 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.