Guide to the Human Genome
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Name: ZCRB1 Sequence: fasta or formatted (217aa) NCBI GI: 51243065
Description:

zinc finger CCHC-type and RNA binding motif 1

Referenced in:

RNA-binding Proteins
Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         14           2
 C cysteine            1.8          4           1
 D aspartate           6.5         14           2
 E glutamate          10.6         23           3
 F phenylalanine       4.1          9           1
 G glycine             5.1         11           2
 H histidine           0.5          1           1
 I isoleucine          5.5         12           1
 K lysine             13.4         29           6
 L leucine             5.5         12           1
 M methionine          1.4          3           1
 N asparagine          4.1          9           2
 P proline             5.1         11           2
 Q glutamine           2.8          6           2
 R arginine            5.5         12           3
 S serine             10.6         23           2
 T threonine           3.2          7           1
 V valine              4.1          9           2
 W tryptophan          0.5          1           1
 Y tyrosine            3.2          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger CCHC-type and RNA binding motif 1 
RBMX2                 0.110   RNA binding motif protein, X-linked 2 
SFRS7                 0.100   splicing factor, arginine/serine-rich 7 
RBM28                 0.095   RNA binding motif protein 28 
CIRBP                 0.093   cold inducible RNA binding protein 
RBM23                 0.083   RNA binding motif protein 23 isoform 3 
RBM23                 0.083   RNA binding motif protein 23 isoform 1 
RBM23                 0.083   RNA binding motif protein 23 isoform 2 
RBMX                  0.083   RNA binding motif protein, X-linked 
CSTF2                 0.080   cleavage stimulation factor subunit 2 
RBMXL1                0.078   RNA binding motif protein, X-linked-like 1 
RBMXL1                0.078   RNA binding motif protein, X-linked-like 1 
SLTM                  0.078   modulator of estrogen induced transcription isoform ...
SLTM                  0.078   modulator of estrogen induced transcription isoform ...
CSTF2T                0.078   cleavage stimulation factor, 3' pre-RNA, subunit 2, ...
TRA2B                 0.076   splicing factor, arginine/serine-rich 10 
RBMXL2                0.076   testes-specific heterogenous nuclear ribonucleoprot...
LOC100288788          0.073   PREDICTED: similar to RNA binding motif protein, X-...
LOC100288788          0.073   PREDICTED: hypothetical protein XP_002343863 
RBM34                 0.073   RNA binding motif protein 34 isoform 1 
RBM39                 0.073   RNA binding motif protein 39 isoform b 
RBM39                 0.073   RNA binding motif protein 39 isoform a 
SFRS2                 0.071   splicing factor, arginine/serine-rich 2 
SFRS2B                0.071   splicing factor, arginine/serine-rich 2B 
RBM4B                 0.068   RNA binding motif protein 4B 
NCBP2                 0.068   nuclear cap binding protein subunit 2, 20kDa isoform...
RBM4                  0.066   RNA binding motif protein 4 
SAFB2                 0.066   scaffold attachment factor B2 
RBM3                  0.066   RNA binding motif protein 3 
RBMXL3                0.066   RNA binding motif protein, X-linked-like 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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