Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: PKD2L2 Sequence: fasta or formatted (613aa) NCBI GI: 116812588
Description:

polycystic kidney disease 2-like 2

Referenced in:

Kidney

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         25           1
 C cysteine            1.6         10           1
 D aspartate           3.6         22           2
 E glutamate           5.5         34           2
 F phenylalanine       9.6         59           2
 G glycine             4.7         29           2
 H histidine           1.0          6           1
 I isoleucine          8.0         49           2
 K lysine              7.3         45           2
 L leucine            10.1         62           6
 M methionine          2.1         13           1
 N asparagine          5.9         36           2
 P proline             1.5          9           1
 Q glutamine           4.1         25           2
 R arginine            4.4         27           2
 S serine              7.7         47           2
 T threonine           5.7         35           3
 V valine              4.7         29           1
 W tryptophan          2.3         14           1
 Y tyrosine            6.0         37           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   polycystic kidney disease 2-like 2 
PKD2                  0.447   polycystin 2 
PKD2L1                0.442   polycystic kidney disease 2-like 1 
PKD1L2                0.146   polycystin 1-like 2 isoform a 
PKDREJ                0.069   receptor for egg jelly-like protein precursor 
PKD1                  0.048   polycystin 1 isoform 2 precursor 
PKD1                  0.048   polycystin 1 isoform 1 precursor 
PKD1L1                0.043   polycystin-1L1 
PKD1L3                0.034   PREDICTED: polycystic kidney disease 1-like 3 [Homo...
PKD1L3                0.034   PREDICTED: polycystic kidney disease 1-like 3 [Homo...
PKD1L3                0.034   PREDICTED: polycystin 1-like 3 
PKD1L3                0.034   polycystin 1-like 3 
CACNA1H               0.033   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1H               0.033   calcium channel, voltage-dependent, T type, alpha 1H...
CACNA1D               0.031   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1G               0.030   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1A               0.030   calcium channel, alpha 1A subunit isoform 4 
CACNA1A               0.030   calcium channel, alpha 1A subunit isoform 3 
CACNA1G               0.030   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.030   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.030   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.030   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.030   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.030   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.030   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.030   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.030   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.030   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.030   voltage-dependent calcium channel alpha 1G subunit i...
CACNA1G               0.030   voltage-dependent calcium channel alpha 1G subunit i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press