NPC1L1 5923

Name: NPC1L1	Sequence: fasta or formatted (1332aa)		NCBI GI: 156231353
Description: Niemann-Pick C1-like protein 1 isoform 2		Referenced in: Stomach, Small Intestine, and Colon Hedgehog and Related Pathways Additional Membrane Functions
Other entries for this name: alt prot [1359aa] Niemann-Pick C1-like protein 1 isoform 1
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.4 125 3 C cysteine 3.1 41 3 D aspartate 3.8 50 2 E glutamate 3.9 52 2 F phenylalanine 5.6 75 3 G glycine 6.5 86 2 H histidine 1.5 20 1 I isoleucine 4.6 61 3 K lysine 2.8 37 2 L leucine 14.0 186 4 M methionine 2.3 30 1 N asparagine 4.3 57 2 P proline 5.3 71 3 Q glutamine 4.1 54 1 R arginine 4.1 54 2 S serine 8.4 112 2 T threonine 5.2 69 2 V valine 6.8 91 2 W tryptophan 1.3 17 1 Y tyrosine 3.3 44 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 Niemann-Pick C1-like protein 1 isoform 2 NPC1L1 0.994 Niemann-Pick C1-like protein 1 isoform 1 NPC1 0.333 Niemann-Pick disease, type C1 precursor PTCH1 0.038 patched isoform S PTCH1 0.038 patched isoform S PTCH1 0.038 patched isoform S PTCH1 0.038 patched isoform S PTCH1 0.038 patched isoform L' PTCH1 0.038 patched isoform M PTCH1 0.038 patched isoform L PTCH2 0.032 patched 2 C6orf138 0.030 hypothetical protein LOC442213 PTCHD3 0.028 patched domain containing 3 PTCHD1 0.025 patched domain containing 1 SCAP 0.019 SREBF chaperone protein PTCHD2 0.009 patched domain containing 2 DISP2 0.009 dispatched B DISP1 0.006 dispatched A TMCO6 0.003 transmembrane and coiled-coil domains 6 LOC730429 0.003 PREDICTED: similar to ubiquitin protein ligase E3 c... LOC730429 0.003 PREDICTED: similar to ubiquitin protein ligase E3 c... C2 0.003 complement component 2 isoform 1 preproprotein [Homo... UBR5 0.003 ubiquitin protein ligase E3 component n-recognin 5 [... CSF3 0.003 colony stimulating factor 3 isoform c CSF3 0.003 colony stimulating factor 3 isoform b precursor [Hom... APOB 0.002 apolipoprotein B precursor MYO9B 0.002 myosin IXB isoform 2 MYO9B 0.002 myosin IXB isoform 1 CSGALNACT1 0.002 chondroitin sulfate N-acetylgalactosaminyltransfera... CSGALNACT1 0.002 chondroitin sulfate N-acetylgalactosaminyltransfera... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.