Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C10orf26 Sequence: fasta or formatted (363aa) NCBI GI: 144953882
Description:

hypothetical protein LOC54838 isoform 1

Referenced in:

WW Domain

Other entries for this name:
alt prot [342aa] hypothetical protein LOC54838 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         24           2
 C cysteine            5.0         18           3
 D aspartate           6.6         24           3
 E glutamate           6.9         25           3
 F phenylalanine       2.5          9           1
 G glycine             6.9         25           2
 H histidine           3.6         13           2
 I isoleucine          3.3         12           4
 K lysine              2.2          8           1
 L leucine             9.9         36           4
 M methionine          0.8          3           1
 N asparagine          3.3         12           2
 P proline            11.6         42           4
 Q glutamine           5.8         21           4
 R arginine            6.3         23           3
 S serine              9.1         33           4
 T threonine           3.0         11           1
 V valine              2.8         10           2
 W tryptophan          1.1          4           2
 Y tyrosine            2.8         10           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC54838 isoform 1 
C10orf26              0.928   hypothetical protein LOC54838 isoform 2 
WBP1                  0.198   WW domain binding protein 1 
YLPM1                 0.027   YLP motif containing 1 
HCN2                  0.025   hyperpolarization activated cyclic nucleotide-gated...
FLJ22184              0.021   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.021   PREDICTED: hypothetical protein LOC80164 
SAMD1                 0.021   sterile alpha motif domain containing 1 
WASF2                 0.020   WAS protein family, member 2 
C15orf37              0.020   hypothetical protein LOC283687 
SMR3A                 0.019   submaxillary gland androgen regulated protein 3 homo...
USP42                 0.019   ubiquitin specific peptidase 42 
CBLL1                 0.019   Cas-Br-M (murine) ecotropic retroviral transforming...
SFPQ                  0.019   splicing factor proline/glutamine rich (polypyrimidin...
BEND4                 0.019   BEN domain containing 4 isoform b 
BEND4                 0.019   BEN domain containing 4 isoform a 
RBM33                 0.019   RNA binding motif protein 33 
MAPT                  0.017   microtubule-associated protein tau isoform 6 
SMARCC1               0.017   SWI/SNF-related matrix-associated actin-dependent r...
MN1                   0.017   meningioma  1 
KIAA1522              0.017   hypothetical protein LOC57648 
NES                   0.016   nestin 
MLLT1                 0.016   myeloid/lymphoid or mixed-lineage leukemia (trithora...
MLL2                  0.016   myeloid/lymphoid or mixed-lineage leukemia 2 
WBP11                 0.016   WW domain binding protein 11 
AUTS2                 0.016   autism susceptibility candidate 2 isoform 1 
JUB                   0.016   ajuba isoform 1 
FMN1                  0.016   formin 1 
WASL                  0.016   Wiskott-Aldrich syndrome gene-like protein 
PELP1                 0.016   proline, glutamic acid and leucine rich protein 1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press