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Search of human proteins with 94421473
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens]
(325 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens] 660 0.0
gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens] 652 0.0
gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens] 122 6e-28
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens] 104 1e-22
gi|199562283 retrotransposon-like 1 [Homo sapiens] 94 1e-19
gi|167466262 zinc finger, CCHC domain containing 16 [Homo sapiens] 85 1e-16
gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens] 70 3e-12
gi|49355807 leucine zipper, down-regulated in cancer 1-like [Hom... 63 3e-10
gi|6912480 leucine zipper, down-regulated in cancer 1 [Homo sapi... 60 2e-09
gi|118200335 family with sequence similarity 127, member A [Homo... 58 1e-08
gi|118200333 family with sequence similarity 127, member B isofo... 58 1e-08
gi|118200337 family with sequence similarity 127, member C [Homo... 58 1e-08
gi|239757911 PREDICTED: similar to Family with sequence similari... 57 2e-08
gi|126157477 hypothetical protein LOC79680 [Homo sapiens] 52 9e-07
gi|28872800 CCAAT/enhancer binding protein epsilon [Homo sapiens] 37 0.018
gi|110611218 ribosome binding protein 1 [Homo sapiens] 36 0.041
gi|110611220 ribosome binding protein 1 [Homo sapiens] 36 0.041
gi|130980075 centromere protein J [Homo sapiens] 36 0.053
gi|7662126 signal-induced proliferation-associated 1 like 1 [Hom... 35 0.070
gi|239745299 PREDICTED: hypothetical protein [Homo sapiens] 35 0.12
gi|239745079 PREDICTED: Putative golgin subfamily A member 6-lik... 35 0.12
gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo sa... 34 0.16
gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo sa... 34 0.16
gi|224549005 RNA binding motif protein 17 [Homo sapiens] 34 0.20
gi|14249678 RNA binding motif protein 17 [Homo sapiens] 34 0.20
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 34 0.20
gi|153945715 myosin VC [Homo sapiens] 34 0.20
gi|154813191 IQ motif containing E isoform 1 [Homo sapiens] 34 0.20
gi|154813193 IQ motif containing E isoform 2 [Homo sapiens] 34 0.20
gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-li... 33 0.26
>gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens]
Length = 325
Score = 660 bits (1703), Expect = 0.0
Identities = 325/325 (100%), Positives = 325/325 (100%)
Query: 1 MTERRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIE 60
MTERRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIE
Sbjct: 1 MTERRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIE 60
Query: 61 LRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCF 120
LRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCF
Sbjct: 61 LRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCF 120
Query: 121 VTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMGS 180
VTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMGS
Sbjct: 121 VTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMGS 180
Query: 181 VIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCIHIERR 240
VIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCIHIERR
Sbjct: 181 VIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCIHIERR 240
Query: 241 LARAAAARKPRSPPRALVLPHIASHHQVDPTEPVGGARMRLTQEEKERRRKLNLCLYCGT 300
LARAAAARKPRSPPRALVLPHIASHHQVDPTEPVGGARMRLTQEEKERRRKLNLCLYCGT
Sbjct: 241 LARAAAARKPRSPPRALVLPHIASHHQVDPTEPVGGARMRLTQEEKERRRKLNLCLYCGT 300
Query: 301 GGHYADNCPAKASKSSPAGNSPAPL 325
GGHYADNCPAKASKSSPAGNSPAPL
Sbjct: 301 GGHYADNCPAKASKSSPAGNSPAPL 325
>gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens]
Length = 708
Score = 652 bits (1683), Expect = 0.0
Identities = 321/324 (99%), Positives = 321/324 (99%)
Query: 1 MTERRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIE 60
MTERRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIE
Sbjct: 1 MTERRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIE 60
Query: 61 LRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCF 120
LRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCF
Sbjct: 61 LRGAAAAAAPPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCF 120
Query: 121 VTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMGS 180
VTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMGS
Sbjct: 121 VTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMGS 180
Query: 181 VIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCIHIERR 240
VIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCIHIERR
Sbjct: 181 VIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCIHIERR 240
Query: 241 LARAAAARKPRSPPRALVLPHIASHHQVDPTEPVGGARMRLTQEEKERRRKLNLCLYCGT 300
LARAAAARKPRSPPRALVLPHIASHHQVDPTEPVGGARMRLTQEEKERRRKLNLCLYCGT
Sbjct: 241 LARAAAARKPRSPPRALVLPHIASHHQVDPTEPVGGARMRLTQEEKERRRKLNLCLYCGT 300
Query: 301 GGHYADNCPAKASKSSPAGNSPAP 324
GGHYADNCPAKASKSSPAG P P
Sbjct: 301 GGHYADNCPAKASKSSPAGKLPGP 324
>gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens]
Length = 475
Score = 122 bits (305), Expect = 6e-28
Identities = 89/282 (31%), Positives = 133/282 (47%), Gaps = 39/282 (13%)
Query: 59 IELRGAAAAAAPPPPIEEEC---PEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDR 115
I + +AA+ P PI E P F G+ L F+ Q +M + +
Sbjct: 214 IVVETSAASEFPQAPIGLEATDFPLQYTLTFSGDSQKLPEFLVQLYSYMRVRGHLYPTEA 273
Query: 116 VRVCFVTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLR 175
V FV + +GRA W L+ L+ +F+ ++ F++P+ + A + I +L
Sbjct: 274 ALVSFVGNCFSGRAGWWFQLLLDIQSPLLEQCESFIPVLQDTFDNPENMKDANQCIHQLC 333
Query: 176 QGMGSVIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCI 235
QG G V + F +IAQ+L+W+E L Q+ EGL+ IQ+ELSH A +LS LI QCI
Sbjct: 334 QGEGHVATH---FHLIAQELNWDESTLWIQFQEGLASSIQDELSHTSPATNLSDLITQCI 390
Query: 236 HIERR-----LARAAAAR--KPRSPP-------RALVLPHIASHHQVDPTEPVGGARMRL 281
+E + L ++++A P SPP A+ PHI
Sbjct: 391 SLEEKPDPNPLGKSSSAEGDGPESPPAENQPMQAAINCPHI------------------- 431
Query: 282 TQEEKERRRKLNLCLYCGTGGHYADNCPAKASKSSPAGNSPA 323
++ E R K LCLYCG GH+A +CP K ++ AGN A
Sbjct: 432 SEAEWVRWHKGRLCLYCGYPGHFARDCPVKPHQALQAGNIQA 473
>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
Length = 569
Score = 104 bits (259), Expect = 1e-22
Identities = 74/239 (30%), Positives = 114/239 (47%), Gaps = 24/239 (10%)
Query: 69 APPPPIEEECPEDLP---------EKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVC 119
A PPP +E P P E F G+P LA F+ Q + F+ F RV
Sbjct: 130 ALPPPASKEPPPQPPLAPLERPEIEPFSGDPVYLAEFLMQLETFIADHEVHFPGGAERVA 189
Query: 120 FVTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMG 179
F+ S TG A WA + + L N+P F+ E++ F P VAK+ IR+L+QG
Sbjct: 190 FLISFFTGEAKDWAISVTQEGSPLHANFPRFLDEIRKEFCGPIPPRVAKKAIRKLKQGHC 249
Query: 180 SVIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCIHIER 239
++ Y++AFQ +AQ L W++ L +Q+ +GLS+ ++EL L LI +C+ IER
Sbjct: 250 TLGSYADAFQFLAQFLSWDDCRLQNQFLKGLSEFFRKELLWSTEMADLDELILECVEIER 309
Query: 240 RLARAAAARKPRSPP----RALVLPHIASHHQVDPTEPVGGARMRLTQEEKERRRKLNL 294
++ R P+ P R ++ P S P E +++E + R+ L
Sbjct: 310 KV------RVPKPIPLPGVRNIIFPFAPS-----PNEEESEDEEYYSEDEDQEARRHRL 357
Score = 30.0 bits (66), Expect = 2.9
Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 12/101 (11%)
Query: 1 MTERRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIE 60
M E+ +E+ +E +++K K+ EE ++ + ++ N E EDED+D
Sbjct: 373 MKEKEEEEMKKE-EEMKKKEEKEEEEEEEMKQKEEEEEIRNKNEEEGESKDEEDEDEDGG 431
Query: 61 LRGAAAAAAPP-----------PPIEEECPEDLPEKFDGNP 90
+ P P++E +DL E + P
Sbjct: 432 QKPEGEPQQDPGTEETYGEVEEEPLDEAQDDDLDELMEMEP 472
>gi|199562283 retrotransposon-like 1 [Homo sapiens]
Length = 1358
Score = 94.4 bits (233), Expect = 1e-19
Identities = 66/245 (26%), Positives = 117/245 (47%), Gaps = 15/245 (6%)
Query: 17 REKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDED--DDIELRGAAAAAAPPPPI 74
RE+ ++ + + +++ + +L +++ E + ++I ++G A P P
Sbjct: 146 REETPQEQNQTEHSTAELMAMVRSIISLYFRMQDLKEQQRVAEEILIKGINAGQLPAP-- 203
Query: 75 EEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWAS 134
+ F G+ F+ CQ+ ++ R F DR+RV +V + ++G A WA
Sbjct: 204 ---------KHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAK 254
Query: 135 AKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMGSVIDYSNAFQMIAQD 194
A L+ + L+ ++PAF+ M VFE Q VA+ + +RQG S +Y + FQ +
Sbjct: 255 ALLQENSPLIGDFPAFLEAMSEVFEYRQALRVAEEAMFTIRQGGRSATEYIDEFQSLVPI 314
Query: 195 LDWNEPALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCIHIERRLA--RAAAARKPRS 252
L W + L +GL++ I+ L + SL +LI + IE +LA RA P +
Sbjct: 315 LGWPDEVLQAHLCQGLNEEIRHYLFRVPQPDSLDSLIVLILQIEEKLAERRAMLRLPPEA 374
Query: 253 PPRAL 257
PR L
Sbjct: 375 RPRNL 379
>gi|167466262 zinc finger, CCHC domain containing 16 [Homo sapiens]
Length = 310
Score = 84.7 bits (208), Expect = 1e-16
Identities = 71/310 (22%), Positives = 134/310 (43%), Gaps = 12/310 (3%)
Query: 22 KQSEENNNLQSQVQKLTEENTTLREQVE-PTPEDEDDDIELRGAAAAAAPPPPIEEECPE 80
K ++ ++ +Q + L EN LR Q++ PT E+ ++ A A P P E
Sbjct: 3 KCTKSSSTMQVEPSFLQAENLILRLQMQHPTTENTAKRGQVMPALATTVMPVPYSLEHLT 62
Query: 81 DLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLERS 140
+F G+P + F+ Q ++ + ++ ++ +
Sbjct: 63 ----QFHGDPANCSEFLTQVTTYLTALQISNPANDAQIKLFFDYLSQQLESCGIISGPDK 118
Query: 141 HYLMHNYPAFMMEMKHVFEDPQRREVAKRKIRRLRQGMGSVIDYSNAFQMIAQDLDWNEP 200
L+ Y ++E + F P ++E+ + +G S F ++AQ+L NE
Sbjct: 119 STLLKQYENLILEFQQSFGKPTKQEINPLMNAKFDKGDNSSQQDPATFHLLAQNLICNET 178
Query: 201 ALIDQYHEGLSDHIQEELSHLEVAKSLSALIGQCIHIERRLARAAAARKPRS--PPRALV 258
Q+ + L+D Q+E S ++ +L LI QCI ++++ + + + P A +
Sbjct: 179 NQSGQFEKALADPNQDEESVTDMMDNLPDLITQCIQLDKKHSDRPELLQSETQLPLLASL 238
Query: 259 LPHIASHHQVDPTEPVGGARMR-----LTQEEKERRRKLNLCLYCGTGGHYADNCPAKAS 313
+ H A DP G ++R LT ++ R+++ LCLYC GH+ +C AK S
Sbjct: 239 IQHQALFSPTDPPPKKGPIQLREGQLPLTPAKRARQQETQLCLYCSQSGHFTRDCLAKRS 298
Query: 314 KSSPAGNSPA 323
++ N+ A
Sbjct: 299 RAPATTNNTA 308
>gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]
Length = 1388
Score = 70.1 bits (170), Expect = 3e-12
Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 10/201 (4%)
Query: 99 QCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLERSHYLMHNYPAFMMEMKHVF 158
+ +I EK + F D R+ F+ S+ G A RW ++E L H +F+ + ++
Sbjct: 1167 EMEIDEEKQMKGFLDDSERMAFLVSLHLGAAERWFILQMEVGEPLSHENKSFLRRSQGIY 1226
Query: 159 EDPQRREVAKRKIRRLRQGMGSVIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQEEL 218
+ ++ + +QG SV Y+ F ++A+ L W++ L ++ EGLS+ + ++
Sbjct: 1227 DSLSEIDILSAVLCHPKQGQKSVRQYATDFLLLARHLSWSDAILRTRFLEGLSEAVTTKM 1286
Query: 219 SH--LEVAKSLSALIGQCIHIERRLARAAAARKPRSPPRALVLPHIASHHQVDPTEPVGG 276
L+VA SL LI + ++ E +LA K + VLP + E G
Sbjct: 1287 GRIFLKVAGSLKELIDRSLYTECQLAE----EKDSPGNSSQVLPTACKRN----NEEAMG 1338
Query: 277 ARMRLTQEEKERRRKLNLCLY 297
+ Q+ +E + C Y
Sbjct: 1339 NELSSQQQTEEHQHVSKRCYY 1359
>gi|49355807 leucine zipper, down-regulated in cancer 1-like [Homo
sapiens]
Length = 239
Score = 63.2 bits (152), Expect = 3e-10
Identities = 44/154 (28%), Positives = 66/154 (42%), Gaps = 16/154 (10%)
Query: 16 LREKVMKQSEENNNLQSQVQKLTEENTTLREQ------VEPTPEDEDDDIELRGAAAAAA 69
LR + E NL + ++ + E T LR + ++ TP I G
Sbjct: 39 LRREASTLRAEKANLTNMLESVMAELTLLRTRARIPGALQITPPISS--ITSNGTRPMTT 96
Query: 70 PPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRA 129
PP LPE F G+P LA F+ Q FM F + RV F+ S +TG A
Sbjct: 97 PPT--------SLPEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEA 148
Query: 130 ARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQR 163
+WA ++ L +NY F+ E++ ++ P R
Sbjct: 149 EKWAIPHMQPDSPLRNNYQGFLAELRRTYKSPLR 182
>gi|6912480 leucine zipper, down-regulated in cancer 1 [Homo
sapiens]
Length = 146
Score = 60.5 bits (145), Expect = 2e-09
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 25/152 (16%)
Query: 7 DELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIELRGAAA 66
DEL ++ L + S EN+ L Q++ L E +L QV P
Sbjct: 3 DELVLLLHALLMRHRALSIENSQLMEQLRLLVCERASLLRQVRPP--------------- 47
Query: 67 AAAPPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMT 126
CP PE F+G L F+ Q +M + F D ++V F+ S++T
Sbjct: 48 ----------SCPVPFPETFNGESSRLPEFIVQTASYMLVNENRFCNDAMKVAFLISLLT 97
Query: 127 GRAARWASAKLERSHYLMHNYPAFMMEMKHVF 158
G A W +E ++ +Y AF+ EMK F
Sbjct: 98 GEAEEWVVPYIEMDSPILGDYRAFLDEMKQCF 129
>gi|118200335 family with sequence similarity 127, member A [Homo
sapiens]
Length = 113
Score = 58.2 bits (139), Expect = 1e-08
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 79 PEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLE 138
P PE FDG+ D L F+ Q +M FS D ++V F+ + +TG A +W ++
Sbjct: 26 PIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSSDALKVTFLITRLTGPALQWVIPYIK 85
Query: 139 RSHYLMHNYPAFMMEMKHVF 158
+ L+++Y F+ EMK VF
Sbjct: 86 KESPLLNDYRGFLAEMKRVF 105
>gi|118200333 family with sequence similarity 127, member B isoform
1 [Homo sapiens]
Length = 113
Score = 58.2 bits (139), Expect = 1e-08
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 79 PEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLE 138
P PE FDG+ D L F+ Q +M FS D ++V F+ + +TG A +W +
Sbjct: 26 PIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIR 85
Query: 139 RSHYLMHNYPAFMMEMKHVF 158
+ L+++Y F+ EMK VF
Sbjct: 86 KESPLLNDYRGFLAEMKRVF 105
>gi|118200337 family with sequence similarity 127, member C [Homo
sapiens]
Length = 113
Score = 57.8 bits (138), Expect = 1e-08
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 79 PEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLE 138
P PE FDG+ D L F+ Q +M FS D ++V F+ + +TG A +W ++
Sbjct: 26 PIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIK 85
Query: 139 RSHYLMHNYPAFMMEMKHVF 158
+ L+ +Y F+ EMK VF
Sbjct: 86 KESPLLSDYRGFLAEMKRVF 105
>gi|239757911 PREDICTED: similar to Family with sequence similarity
127, member B [Homo sapiens]
Length = 113
Score = 57.0 bits (136), Expect = 2e-08
Identities = 28/80 (35%), Positives = 43/80 (53%)
Query: 79 PEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLE 138
P PE FDG+ D L F+ Q +M FS D ++V F+ + +TG A +W +
Sbjct: 26 PIPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIR 85
Query: 139 RSHYLMHNYPAFMMEMKHVF 158
+ L+++Y F+ EMK VF
Sbjct: 86 KESPLLNDYRGFLAEMKRVF 105
>gi|126157477 hypothetical protein LOC79680 [Homo sapiens]
Length = 364
Score = 51.6 bits (122), Expect = 9e-07
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 79 PEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLE 138
P P FDG+P +L F+AQ +M + + RVC + +TGRA WA+ L+
Sbjct: 100 PGSDPGTFDGSPWLLDRFLAQLGDYMSFHFEHYQDNISRVCEILRRLTGRAQAWAAPYLD 159
Query: 139 RSHYLMHNYPAFMMEMKHVFEDP 161
L +Y F ++K V +DP
Sbjct: 160 GDLPLPDDYELFCQDLKEVVQDP 182
>gi|28872800 CCAAT/enhancer binding protein epsilon [Homo sapiens]
Length = 281
Score = 37.4 bits (85), Expect = 0.018
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 4 RRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPE 53
+ RD+ I ++KV++ EN L+S+V++LT+E TLR PE
Sbjct: 220 KSRDKAKRRILETQQKVLEYMAENERLRSRVEQLTQELDTLRNLFRQIPE 269
>gi|110611218 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 36.2 bits (82), Expect = 0.041
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 10 SEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIELRGAAAAAA 69
++E+ LR+ +++ + + +S+ QK ++E +R+Q+ +D ++ GA A++
Sbjct: 787 AKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDG-DIAGAPASSP 845
Query: 70 PPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVC 119
PP E++ P L + + +L Q Q K T +F + C
Sbjct: 846 EAPPAEQD-PVQLKTQLEWTEAILEDEQTQRQ----KLTAEFEEAQTSAC 890
>gi|110611220 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 36.2 bits (82), Expect = 0.041
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 10 SEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIELRGAAAAAA 69
++E+ LR+ +++ + + +S+ QK ++E +R+Q+ +D ++ GA A++
Sbjct: 787 AKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDG-DIAGAPASSP 845
Query: 70 PPPPIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVC 119
PP E++ P L + + +L Q Q K T +F + C
Sbjct: 846 EAPPAEQD-PVQLKTQLEWTEAILEDEQTQRQ----KLTAEFEEAQTSAC 890
>gi|130980075 centromere protein J [Homo sapiens]
Length = 1338
Score = 35.8 bits (81), Expect = 0.053
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 7/54 (12%)
Query: 3 ERRRDE---LSEEINNLRE----KVMKQSEENNNLQSQVQKLTEENTTLREQVE 49
++ R+E L ++I +LRE K K S ++ L+SQ+Q L ENT LRE+++
Sbjct: 990 KKEREEIQTLKQQIADLREDLKRKETKWSSTHSRLRSQIQMLVRENTDLREEIK 1043
>gi|7662126 signal-induced proliferation-associated 1 like 1 [Homo
sapiens]
Length = 1804
Score = 35.4 bits (80), Expect = 0.070
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 7 DELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQ 47
D+L + LRE + K+ E+ +LQ++VQ L E+N L+E+
Sbjct: 1742 DQLEGMLKMLREDLKKEKEDKAHLQAEVQHLREDNLRLQEE 1782
>gi|239745299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 523
Score = 34.7 bits (78), Expect = 0.12
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 1 MTERRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDED 56
+ R+ + L E+ LRE+ + E+ L Q ++L E+ LREQ E E E+
Sbjct: 193 LNRRQEERLREQEERLREQEERLREQEERLCEQEERLREQEERLREQEERLCEQEE 248
Score = 32.7 bits (73), Expect = 0.45
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 5 RRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDE 55
+ + L E+ LRE+ + E+ L+ Q ++L E+ LREQ E E E
Sbjct: 281 QEERLCEQEERLREQEERLCEQEERLREQEERLCEQEERLREQEERLCEQE 331
>gi|239745079 PREDICTED: Putative golgin subfamily A member 6-like
protein 6 [Homo sapiens]
Length = 724
Score = 34.7 bits (78), Expect = 0.12
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 3 ERRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDED 56
E + + E+I EKV +Q E+ ++ Q +K+ E+ +REQ E T E E+
Sbjct: 563 EEKMHDQEEKIREQEEKVWRQEEK---IREQEEKIREQEEKIREQEEMTQEQEE 613
>gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo
sapiens]
Length = 987
Score = 34.3 bits (77), Expect = 0.16
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 8 ELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDED---DDIELRG- 63
E +E+ ++ K++++ E+N LQ ++ + + + P P DE+ +++ G
Sbjct: 660 EAQQELRTVKRKLLEEEEKNARLQKELGDVQGHGRVVTSRAAPPPVDEEPESSEVDAAGR 719
Query: 64 ----AAAAAAPPPPIEEECPEDLPEKFD-GNP 90
+ +P PP + L + FD G P
Sbjct: 720 WPGVCVSRTSPTPPESATTVKSLIKSFDLGRP 751
>gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo
sapiens]
Length = 1068
Score = 34.3 bits (77), Expect = 0.16
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 8 ELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDED---DDIELRG- 63
E +E+ ++ K++++ E+N LQ ++ + + + P P DE+ +++ G
Sbjct: 741 EAQQELRTVKRKLLEEEEKNARLQKELGDVQGHGRVVTSRAAPPPVDEEPESSEVDAAGR 800
Query: 64 ----AAAAAAPPPPIEEECPEDLPEKFD-GNP 90
+ +P PP + L + FD G P
Sbjct: 801 WPGVCVSRTSPTPPESATTVKSLIKSFDLGRP 832
>gi|224549005 RNA binding motif protein 17 [Homo sapiens]
Length = 401
Score = 33.9 bits (76), Expect = 0.20
Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 19/103 (18%)
Query: 7 DELSEEINNLREKVMKQSEENNNLQSQV--QKLTEENTTLREQVE--------PTPE-DE 55
DE N EKV+K+ E Q ++ QK EE R+ P P+ DE
Sbjct: 98 DEYDPMFPNDYEKVVKRQREERQRQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDE 157
Query: 56 DDDIEL----RGAAAAAAPPPPI----EEECPEDLPEKFDGNP 90
D+D E R AA PP ++E P D P + D P
Sbjct: 158 DEDYERERRKRSMGGAAIAPPTSLVEKDKELPRDFPYEEDSRP 200
>gi|14249678 RNA binding motif protein 17 [Homo sapiens]
Length = 401
Score = 33.9 bits (76), Expect = 0.20
Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 19/103 (18%)
Query: 7 DELSEEINNLREKVMKQSEENNNLQSQV--QKLTEENTTLREQVE--------PTPE-DE 55
DE N EKV+K+ E Q ++ QK EE R+ P P+ DE
Sbjct: 98 DEYDPMFPNDYEKVVKRQREERQRQRELERQKEIEEREKRRKDRHEASGFARRPDPDSDE 157
Query: 56 DDDIEL----RGAAAAAAPPPPI----EEECPEDLPEKFDGNP 90
D+D E R AA PP ++E P D P + D P
Sbjct: 158 DEDYERERRKRSMGGAAIAPPTSLVEKDKELPRDFPYEEDSRP 200
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 33.9 bits (76), Expect = 0.20
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 5 RRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDED 56
R ++ EE +RE+ K E+ +Q Q +K+ E+ ++EQ E E E+
Sbjct: 594 REKKMREEEEMMREQEEKMQEQEEKMQEQEEKMWEQEEKMQEQEEKMWEQEE 645
Score = 32.3 bits (72), Expect = 0.59
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 4 RRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDE 55
R+ + L E+ +RE+ K + L+ Q ++L E+ LREQ E ++E
Sbjct: 297 RQEERLREQEGKMREQEEKMWRQEKRLREQEKELREQEKELREQKELREQEE 348
Score = 32.0 bits (71), Expect = 0.77
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 6 RDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDED 56
++E E +RE+ K EE ++ Q +K+ E+ ++EQ E E E+
Sbjct: 581 QEEKMREEERMREREKKMREEEEMMREQEEKMQEQEEKMQEQEEKMWEQEE 631
Score = 31.2 bits (69), Expect = 1.3
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 8 ELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDED 56
E E ++RE+ K EE ++ Q +K+ E+ ++EQ E E E+
Sbjct: 707 EKMREEESMREREKKMREEEEMMREQEEKMQEQEEKMQEQEEEMWEQEE 755
Score = 30.0 bits (66), Expect = 2.9
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 12/66 (18%)
Query: 4 RRRDELSEEINNLR-EKVMKQSE-----------ENNNLQSQVQKLTEENTTLREQVEPT 51
R ++++ E++ +R EK M++ E E ++ + +K+ EE T+REQ E
Sbjct: 414 REQEKMWEQVEKMREEKKMQEQEKKTRDQEEKMQEEERIREREKKMREEEETMREQEEKM 473
Query: 52 PEDEDD 57
+ E++
Sbjct: 474 QKQEEN 479
Score = 28.5 bits (62), Expect = 8.5
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 4 RRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQ 47
R+ + L E+ +RE+ K ++ + Q ++L E+ +REQ
Sbjct: 373 RQEERLWEQEKQMREQEQKMRDQEERMWEQDERLREKEERMREQ 416
>gi|153945715 myosin VC [Homo sapiens]
Length = 1742
Score = 33.9 bits (76), Expect = 0.20
Identities = 17/57 (29%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 9 LSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTL---REQVEPTPEDEDDDIELR 62
LS+EIN+L++ ++++ N +++ +V +LT EN + ++Q+ E + D+E+R
Sbjct: 1176 LSQEINHLQKLFREENDINESIRHEVTRLTSENMMIPDFKQQISEL-EKQKQDLEIR 1231
>gi|154813191 IQ motif containing E isoform 1 [Homo sapiens]
Length = 695
Score = 33.9 bits (76), Expect = 0.20
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 8 ELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIELRGAAAA 67
+L +E+ RE ++ E L+ ++Q LT + L+E E E+++D E+ A
Sbjct: 427 DLEKELECAREGEEERREREEVLREEIQTLTSK---LQELQEMKKEEKEDCPEVPHKAQE 483
Query: 68 AAPPPPIEEECPEDLP 83
P P C +D P
Sbjct: 484 LPAPTPSSRHCEQDWP 499
Score = 29.6 bits (65), Expect = 3.8
Identities = 45/240 (18%), Positives = 100/240 (41%), Gaps = 33/240 (13%)
Query: 4 RRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIELRG 63
R ++++ +EI L++ + Q + + +++++++L EEN+ Q+E + +R
Sbjct: 141 REKEDMYDEIIELKKSLHVQKSDVDLMRTKLRRLEEENSRKDRQIEQLLDPSRGTDFVRT 200
Query: 64 AAAAAAPPP-----------PIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFS 112
A +E++C E DM + + +I ME T
Sbjct: 201 LAEKRPDASWVINGLKQRILKLEQQCKEKDGTISKLQTDMKTTNLEEMRIAME--TYYEE 258
Query: 113 VDRVRVCFVTSMMTGR---AARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKR 169
V R++ +S TG+ + AK R + + ++ + E+ Q
Sbjct: 259 VHRLQTLLASSETTGKKPLGEKKTGAK--RQKKMGSALLSLSRSVQELTEENQ------- 309
Query: 170 KIRRLRQGMGSVIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQEELSHLEVAKSLSA 229
L++ + V+ S ++W++P L+ + E ++++LS +E +KS +A
Sbjct: 310 ---SLKEDLDRVLSTSPTISKTQGYVEWSKPRLLRRIVE-----LEKKLSVMESSKSHAA 361
>gi|154813193 IQ motif containing E isoform 2 [Homo sapiens]
Length = 679
Score = 33.9 bits (76), Expect = 0.20
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 8 ELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIELRGAAAA 67
+L +E+ RE ++ E L+ ++Q LT + L+E E E+++D E+ A
Sbjct: 411 DLEKELECAREGEEERREREEVLREEIQTLTSK---LQELQEMKKEEKEDCPEVPHKAQE 467
Query: 68 AAPPPPIEEECPEDLP 83
P P C +D P
Sbjct: 468 LPAPTPSSRHCEQDWP 483
Score = 29.6 bits (65), Expect = 3.8
Identities = 45/240 (18%), Positives = 100/240 (41%), Gaps = 33/240 (13%)
Query: 4 RRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIELRG 63
R ++++ +EI L++ + Q + + +++++++L EEN+ Q+E + +R
Sbjct: 125 REKEDMYDEIIELKKSLHVQKSDVDLMRTKLRRLEEENSRKDRQIEQLLDPSRGTDFVRT 184
Query: 64 AAAAAAPPP-----------PIEEECPEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFS 112
A +E++C E DM + + +I ME T
Sbjct: 185 LAEKRPDASWVINGLKQRILKLEQQCKEKDGTISKLQTDMKTTNLEEMRIAME--TYYEE 242
Query: 113 VDRVRVCFVTSMMTGR---AARWASAKLERSHYLMHNYPAFMMEMKHVFEDPQRREVAKR 169
V R++ +S TG+ + AK R + + ++ + E+ Q
Sbjct: 243 VHRLQTLLASSETTGKKPLGEKKTGAK--RQKKMGSALLSLSRSVQELTEENQ------- 293
Query: 170 KIRRLRQGMGSVIDYSNAFQMIAQDLDWNEPALIDQYHEGLSDHIQEELSHLEVAKSLSA 229
L++ + V+ S ++W++P L+ + E ++++LS +E +KS +A
Sbjct: 294 ---SLKEDLDRVLSTSPTISKTQGYVEWSKPRLLRRIVE-----LEKKLSVMESSKSHAA 345
>gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 828
Score = 33.5 bits (75), Expect = 0.26
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 6 RDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDED 56
++E E +RE+ K EE ++ Q +K+ E+ +REQ E E E+
Sbjct: 552 QEEKMREEERMREREKKMREEEEMMREQEEKMQEQEEKMREQEEKMWEQEE 602
Score = 32.3 bits (72), Expect = 0.59
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 5 RRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDED 56
R ++ EE +RE+ K E+ ++ Q +K+ E+ ++EQ E E E+
Sbjct: 565 REKKMREEEEMMREQEEKMQEQEEKMREQEEKMWEQEEKMQEQEEKMWEQEE 616
Score = 31.6 bits (70), Expect = 1.0
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 4 RRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDE 55
R+ + L E+ +RE+ K + L+ Q ++L E+ LREQ + ++E
Sbjct: 259 RQEERLREQEGKMREQEEKMRRQEKRLREQEKELREQEKELREQKKLREQEE 310
Score = 30.0 bits (66), Expect = 2.9
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 3 ERRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDEDDDIELR 62
E + E E++ EK+ +Q EE + +Q Q + + E+ ++EQ E E E+ E
Sbjct: 601 EEKMQEQEEKMWEQEEKMWEQ-EEEDKMQEQEEMMWEQEEKMQEQEEKMWEQEEKMREQE 659
Query: 63 GAAAAAAPPPPIEEECPEDLPEKFDGNPDML 93
+EE + EK G + +
Sbjct: 660 EKMREQEEKMQGQEEKMREQEEKMQGQEEKM 690
Score = 29.6 bits (65), Expect = 3.8
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 4 RRRDELSEEINNLREKVMKQSEENNNLQSQVQKLTEENTTLREQVEPTPEDE 55
R+ + L E+ +RE+ K ++ + Q ++L E+ +REQ + ++E
Sbjct: 335 RQEERLWEQEKQMREQEQKMRDQEERMWEQDERLREKEERMREQEKMWEQEE 386
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,094,751
Number of Sequences: 37866
Number of extensions: 703468
Number of successful extensions: 6011
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 5269
Number of HSP's gapped (non-prelim): 851
length of query: 325
length of database: 18,247,518
effective HSP length: 102
effective length of query: 223
effective length of database: 14,385,186
effective search space: 3207896478
effective search space used: 3207896478
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.