Guide to the Human Genome
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Name: C22orf29 Sequence: fasta or formatted (364aa) NCBI GI: 126157477
Description:

hypothetical protein LOC79680

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.3         34           3
 C cysteine            2.7         10           2
 D aspartate           4.9         18           2
 E glutamate           7.1         26           3
 F phenylalanine       2.7         10           1
 G glycine             7.1         26           2
 H histidine           1.9          7           1
 I isoleucine          1.4          5           1
 K lysine              2.5          9           1
 L leucine             8.0         29           2
 M methionine          1.9          7           1
 N asparagine          1.6          6           1
 P proline            14.3         52           2
 Q glutamine           5.5         20           2
 R arginine            5.5         20           2
 S serine              8.0         29           2
 T threonine           5.2         19           2
 V valine              6.3         23           2
 W tryptophan          1.6          6           1
 Y tyrosine            2.2          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC79680 
LDOC1L                0.046   leucine zipper, down-regulated in cancer 1-like [Hom...
FAM127A               0.039   family with sequence similarity 127, member A [Homo...
OGFR                  0.039   opioid growth factor receptor 
LDOC1                 0.039   leucine zipper, down-regulated in cancer 1 
YLPM1                 0.036   YLP motif containing 1 
PEG10                 0.036   paternally expressed 10 isoform RF1 
PEG10                 0.036   paternally expressed 10 isoform RF1/2 
FAM127B               0.036   family with sequence similarity 127, member B isofo...
FAM127C               0.036   family with sequence similarity 127, member C [Homo...
LOC100292719          0.034   PREDICTED: similar to Family with sequence similari...
PRG4                  0.032   proteoglycan 4 isoform D 
PRG4                  0.032   proteoglycan 4 isoform C 
PRG4                  0.032   proteoglycan 4 isoform B 
PRG4                  0.032   proteoglycan 4 isoform A 
KIAA0754              0.031   hypothetical protein LOC643314 
BAT2D1                0.031   HBxAg transactivated protein 2 
MAPK7                 0.031   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.031   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.031   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.031   mitogen-activated protein kinase 7 isoform 2 
PCLO                  0.030   piccolo isoform 2 
PCLO                  0.030   piccolo isoform 1 
NACA                  0.030   nascent polypeptide-associated complex alpha subuni...
ZCCHC5                0.030   zinc finger, CCHC domain containing 5 
TBC1D10B              0.028   TBC1 domain family, member 10B 
RAPH1                 0.028   Ras association and pleckstrin homology domains 1 is...
MLL2                  0.027   myeloid/lymphoid or mixed-lineage leukemia 2 
TTLL10                0.027   tubulin tyrosine ligase-like family, member 10 isof...
KIAA1522              0.027   hypothetical protein LOC57648 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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