Guide to the Human Genome
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Name: LOC100292719 Sequence: fasta or formatted (113aa) NCBI GI: 239757911
Description:

PREDICTED: similar to Family with sequence similarity 127, member B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2          7           2
 C cysteine            0.9          1           1
 D aspartate           8.0          9           1
 E glutamate           7.1          8           2
 F phenylalanine       8.0          9           1
 G glycine             5.3          6           1
 H histidine           0.0          0           0
 I isoleucine          4.4          5           1
 K lysine              3.5          4           1
 L leucine            10.6         12           2
 M methionine          3.5          4           1
 N asparagine          3.5          4           1
 P proline             8.0          9           1
 Q glutamine           2.7          3           1
 R arginine            8.8         10           2
 S serine              2.7          3           1
 T threonine           6.2          7           1
 V valine              5.3          6           1
 W tryptophan          2.7          3           1
 Y tyrosine            2.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Family with sequence similari... 
FAM127B               0.981   family with sequence similarity 127, member B isofo...
FAM127C               0.944   family with sequence similarity 127, member C [Homo...
FAM127A               0.925   family with sequence similarity 127, member A [Homo...
FAM127B               0.502   family with sequence similarity 127, member B isofo...
LDOC1                 0.502   leucine zipper, down-regulated in cancer 1 
LDOC1L                0.254   leucine zipper, down-regulated in cancer 1-like [Hom...
PEG10                 0.150   paternally expressed 10 isoform RF1 
PEG10                 0.150   paternally expressed 10 isoform RF1/2 
RTL1                  0.150   retrotransposon-like 1 
ZCCHC5                0.122   zinc finger, CCHC domain containing 5 
C22orf29              0.117   hypothetical protein LOC79680 
RGAG4                 0.113   retrotransposon gag domain containing 4 
RGAG1                 0.009   retrotransposon gag domain containing 1 
AP3D1                 0.009   adaptor-related protein complex 3, delta 1 subunit ...
AP3D1                 0.009   adaptor-related protein complex 3, delta 1 subunit ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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