Guide to the Human Genome
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Name: C1orf14 Sequence: fasta or formatted (653aa) NCBI GI: 93204885
Description:

chromosome 1 open reading frame 14

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         50           6
 C cysteine            2.0         13           1
 D aspartate           6.1         40           2
 E glutamate           8.9         58           3
 F phenylalanine       2.8         18           2
 G glycine             6.0         39           2
 H histidine           1.5         10           2
 I isoleucine          6.4         42           3
 K lysine              7.0         46           2
 L leucine             9.0         59           2
 M methionine          2.8         18           2
 N asparagine          4.0         26           3
 P proline             4.6         30           2
 Q glutamine           2.8         18           2
 R arginine            4.9         32           3
 S serine              6.9         45           3
 T threonine           5.1         33           2
 V valine              8.0         52           3
 W tryptophan          1.2          8           1
 Y tyrosine            2.5         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromosome 1 open reading frame 14 
SHCBP1                0.171   SHC SH2-domain binding protein 1 
FBXO11                0.012   F-box only protein 11 isoform 1 
FBXO11                0.012   F-box only protein 11 isoform 2 
EOMES                 0.008   eomesodermin 
PHACTR2               0.008   phosphatase and actin regulator 2 isoform 4 
PHACTR2               0.008   phosphatase and actin regulator 2 isoform 3 
PHACTR2               0.008   phosphatase and actin regulator 2 isoform 2 
PHACTR2               0.008   phosphatase and actin regulator 2 isoform 1 
FBXO10                0.007   F-box protein 10 
REPS1                 0.006   RALBP1 associated Eps domain containing 1 isoform a...
REPS1                 0.006   RALBP1 associated Eps domain containing 1 isoform b...
C1orf96               0.006   hypothetical protein LOC126731 
MS4A14                0.006   membrane-spanning 4-domains, subfamily A, member 14...
MS4A14                0.006   membrane-spanning 4-domains, subfamily A, member 14...
FBXO11                0.005   F-box only protein 11 isoform 3 
C4orf40               0.005   hypothetical protein LOC401137 
BIN1                  0.005   bridging integrator 1 isoform 9 
BIN1                  0.005   bridging integrator 1 isoform 8 
GALNT12               0.005   N-acetylgalactosaminyltransferase 12 
C9orf66               0.005   hypothetical protein LOC157983 
BIN1                  0.005   bridging integrator 1 isoform 7 
BIN1                  0.005   bridging integrator 1 isoform 3 
AKAP12                0.005   A kinase (PRKA) anchor protein 12 isoform 1 
AKAP12                0.005   A kinase (PRKA) anchor protein 12 isoform 2 
MUC17                 0.005   mucin 17 
NCOR1                 0.004   nuclear receptor co-repressor 1 
CRYBB1                0.004   crystallin, beta B1 
LOC402360             0.004   PREDICTED: similar to hCG1742476 
LOC402360             0.004   PREDICTED: similar to hCG1742476 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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