Guide to the Human Genome
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Name: BIN1 Sequence: fasta or formatted (454aa) NCBI GI: 4757748
Description:

bridging integrator 1 isoform 8

Referenced in:

Myc and Related Functions
Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [593aa] bridging integrator 1 isoform 1
alt prot [550aa] bridging integrator 1 isoform 2
alt prot [506aa] bridging integrator 1 isoform 3
alt prot [497aa] bridging integrator 1 isoform 4
alt prot [518aa] bridging integrator 1 isoform 5
alt prot [482aa] bridging integrator 1 isoform 6
alt prot [475aa] bridging integrator 1 isoform 7
alt prot [439aa] bridging integrator 1 isoform 9
alt prot [409aa] bridging integrator 1 isoform 10
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         43           2
 C cysteine            0.7          3           1
 D aspartate           5.3         24           1
 E glutamate           9.7         44           3
 F phenylalanine       3.3         15           1
 G glycine             6.8         31           2
 H histidine           2.0          9           2
 I isoleucine          2.0          9           1
 K lysine              9.3         42           3
 L leucine             8.1         37           2
 M methionine          2.0          9           1
 N asparagine          5.1         23           2
 P proline             5.9         27           2
 Q glutamine           6.2         28           1
 R arginine            3.7         17           2
 S serine              5.9         27           3
 T threonine           5.3         24           1
 V valine              6.4         29           3
 W tryptophan          1.1          5           1
 Y tyrosine            1.8          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   bridging integrator 1 isoform 8 
BIN1                  0.976   bridging integrator 1 isoform 4 
BIN1                  0.957   bridging integrator 1 isoform 9 
BIN1                  0.937   bridging integrator 1 isoform 7 
BIN1                  0.933   bridging integrator 1 isoform 6 
BIN1                  0.919   bridging integrator 1 isoform 3 
BIN1                  0.876   bridging integrator 1 isoform 10 
BIN1                  0.869   bridging integrator 1 isoform 5 
BIN1                  0.839   bridging integrator 1 isoform 2 
BIN1                  0.631   bridging integrator 1 isoform 1 
AMPH                  0.374   amphiphysin isoform 2 
AMPH                  0.374   amphiphysin isoform 1 
BIN2                  0.319   bridging integrator 2 
BIN3                  0.036   bridging integrator 3 
DNMBP                 0.027   dynamin binding protein 
UBASH3A               0.024   ubiquitin associated and SH3 domain containing, A sh...
UBASH3A               0.024   ubiquitin associated and SH3 domain containing, A lon...
RAD23A                0.023   UV excision repair protein RAD23 homolog A 
NEB                   0.021   nebulin 
TAF4                  0.021   TBP-associated factor 4 
PPRC1                 0.019   peroxisome proliferator-activated receptor gamma, co...
ARMCX2                0.019   ALEX2 protein 
ARMCX2                0.019   ALEX2 protein 
GRM5                  0.019   glutamate receptor, metabotropic 5 isoform a precur...
GRM5                  0.019   glutamate receptor, metabotropic 5 isoform b precurso...
PDCD6IP               0.019   programmed cell death 6 interacting protein isoform...
PDCD6IP               0.019   programmed cell death 6 interacting protein isoform ...
MYH9                  0.019   myosin, heavy polypeptide 9, non-muscle 
LOC100291634          0.018   PREDICTED: hypothetical protein XP_002346062 
LOC100291096          0.018   PREDICTED: hypothetical protein XP_002346952 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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