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Search of human proteins with 8924256
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8924256 t-complex 11 isoform 2 [Homo sapiens]
(441 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8924256 t-complex 11 isoform 2 [Homo sapiens] 867 0.0
gi|148226214 t-complex 11 isoform 1 [Homo sapiens] 836 0.0
gi|22749517 t-complex 11 (mouse) like 2 [Homo sapiens] 322 3e-88
gi|224493895 t-complex 11 (mouse) like 1 [Homo sapiens] 315 7e-86
gi|224493847 t-complex 11 (mouse) like 1 [Homo sapiens] 315 7e-86
gi|58530840 desmoplakin isoform I [Homo sapiens] 33 0.52
gi|29789058 WW and C2 domain containing 1 isoform 3 [Homo sapiens] 33 0.67
gi|242247257 WW and C2 domain containing 1 isoform 2 [Homo sapiens] 33 0.67
gi|242247251 WW and C2 domain containing 1 isoform 1 [Homo sapiens] 33 0.67
gi|196259796 hypothetical protein LOC375484 [Homo sapiens] 32 0.88
gi|55741473 HECT, C2 and WW domain containing E3 ubiquitin prote... 32 0.88
gi|63252870 osteosarcoma amplified 9 isoform 4 precursor [Homo s... 32 1.1
gi|63252868 osteosarcoma amplified 9 isoform 3 precursor [Homo s... 32 1.1
gi|42734393 forkhead box R1 [Homo sapiens] 32 1.1
gi|28076869 serine (or cysteine) proteinase inhibitor, clade B (... 32 1.1
gi|190684710 EFR3 homolog B [Homo sapiens] 32 1.5
gi|13540614 coiled-coil domain containing 130 [Homo sapiens] 32 1.5
gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens] 31 2.0
gi|19743886 regulatory factor X4 isoform a [Homo sapiens] 31 2.6
gi|47132527 regulatory factor X4 isoform c [Homo sapiens] 31 2.6
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 31 2.6
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 31 2.6
gi|148833496 interferon regulatory factor 5 isoform b [Homo sapi... 30 3.3
gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens] 30 3.3
gi|15011898 regulatory factor X4 isoform b [Homo sapiens] 30 3.3
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 30 3.3
gi|209977080 REST corepressor 3 isoform a [Homo sapiens] 30 3.3
gi|8922733 REST corepressor 3 isoform d [Homo sapiens] 30 3.3
gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens] 30 3.3
gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens] 30 3.3
>gi|8924256 t-complex 11 isoform 2 [Homo sapiens]
Length = 441
Score = 867 bits (2241), Expect = 0.0
Identities = 441/441 (100%), Positives = 441/441 (100%)
Query: 1 MAPKGILGSFPTAMNLSLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLKEIKEILL 60
MAPKGILGSFPTAMNLSLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLKEIKEILL
Sbjct: 1 MAPKGILGSFPTAMNLSLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLKEIKEILL 60
Query: 61 SLLLPRQNRLRIEIEEALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKL 120
SLLLPRQNRLRIEIEEALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKL
Sbjct: 61 SLLLPRQNRLRIEIEEALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKL 120
Query: 121 ENITDPVWLLRGIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLN 180
ENITDPVWLLRGIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLN
Sbjct: 121 ENITDPVWLLRGIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLN 180
Query: 181 HTTKWLTQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLW 240
HTTKWLTQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLW
Sbjct: 181 HTTKWLTQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLW 240
Query: 241 DLENEEFPETLLMDRTRLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRIT 300
DLENEEFPETLLMDRTRLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRIT
Sbjct: 241 DLENEEFPETLLMDRTRLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRIT 300
Query: 301 KSLLEDFHSRPEEAILTVSEQVSQEIHQSLKNMGLVALSSDNTASLMGQLQNIAKKENCV 360
KSLLEDFHSRPEEAILTVSEQVSQEIHQSLKNMGLVALSSDNTASLMGQLQNIAKKENCV
Sbjct: 301 KSLLEDFHSRPEEAILTVSEQVSQEIHQSLKNMGLVALSSDNTASLMGQLQNIAKKENCV 360
Query: 361 CSVIDQRIHLFLKCCLVLGVQRSLLDLPGGLTLIEAELAELGQKFVNLTHHNQQVFGPYY 420
CSVIDQRIHLFLKCCLVLGVQRSLLDLPGGLTLIEAELAELGQKFVNLTHHNQQVFGPYY
Sbjct: 361 CSVIDQRIHLFLKCCLVLGVQRSLLDLPGGLTLIEAELAELGQKFVNLTHHNQQVFGPYY 420
Query: 421 TEILKTLISPAQALETKVESV 441
TEILKTLISPAQALETKVESV
Sbjct: 421 TEILKTLISPAQALETKVESV 441
>gi|148226214 t-complex 11 isoform 1 [Homo sapiens]
Length = 516
Score = 836 bits (2159), Expect = 0.0
Identities = 425/425 (100%), Positives = 425/425 (100%)
Query: 17 SLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLKEIKEILLSLLLPRQNRLRIEIEE 76
SLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLKEIKEILLSLLLPRQNRLRIEIEE
Sbjct: 92 SLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLKEIKEILLSLLLPRQNRLRIEIEE 151
Query: 77 ALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKLENITDPVWLLRGIFQV 136
ALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKLENITDPVWLLRGIFQV
Sbjct: 152 ALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKLENITDPVWLLRGIFQV 211
Query: 137 LGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAGDLTMS 196
LGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAGDLTMS
Sbjct: 212 LGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAGDLTMS 271
Query: 197 PPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLWDLENEEFPETLLMDRT 256
PPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLWDLENEEFPETLLMDRT
Sbjct: 272 PPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLWDLENEEFPETLLMDRT 331
Query: 257 RLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRITKSLLEDFHSRPEEAIL 316
RLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRITKSLLEDFHSRPEEAIL
Sbjct: 332 RLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRITKSLLEDFHSRPEEAIL 391
Query: 317 TVSEQVSQEIHQSLKNMGLVALSSDNTASLMGQLQNIAKKENCVCSVIDQRIHLFLKCCL 376
TVSEQVSQEIHQSLKNMGLVALSSDNTASLMGQLQNIAKKENCVCSVIDQRIHLFLKCCL
Sbjct: 392 TVSEQVSQEIHQSLKNMGLVALSSDNTASLMGQLQNIAKKENCVCSVIDQRIHLFLKCCL 451
Query: 377 VLGVQRSLLDLPGGLTLIEAELAELGQKFVNLTHHNQQVFGPYYTEILKTLISPAQALET 436
VLGVQRSLLDLPGGLTLIEAELAELGQKFVNLTHHNQQVFGPYYTEILKTLISPAQALET
Sbjct: 452 VLGVQRSLLDLPGGLTLIEAELAELGQKFVNLTHHNQQVFGPYYTEILKTLISPAQALET 511
Query: 437 KVESV 441
KVESV
Sbjct: 512 KVESV 516
>gi|22749517 t-complex 11 (mouse) like 2 [Homo sapiens]
Length = 519
Score = 322 bits (826), Expect = 3e-88
Identities = 174/423 (41%), Positives = 271/423 (64%), Gaps = 16/423 (3%)
Query: 17 SLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLKEIKEILLSLLLPRQNRLRIEIEE 76
SL G+VK VH AFWD L +L+A PP+F A++L +EI+EILLS L P NRLR +I E
Sbjct: 98 SLAGRVKHIVHQAFWDVLDSELNADPPEFEHAIKLFEEIREILLSFLTPGGNRLRNQICE 157
Query: 77 ALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKLENITDPVWLLRGIFQV 136
LD DL++Q+AEH A+ + L+ YV++ M LCAPVRD +++L+ + V +LR IF V
Sbjct: 158 VLDTDLIRQQAEHSAVDIQGLANYVISTMGKLCAPVRDNDIRELKATGNIVEVLRQIFHV 217
Query: 137 LGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAGDLTMS 196
L M+MDM N+TI SL+PHLQ ++YER KFQE+L + PS L+ TT+W+ ++ + S
Sbjct: 218 LDLMQMDMANFTIMSLRPHLQRQLVEYERTKFQEILEETPSALDQTTEWIKESVNEELFS 277
Query: 197 PPTCPDTSDSSSVAGPSPNEAANNPEP-LSPTMVLCQGFLNLLLWDLENEEFPETLLMDR 255
S+S+ G A N +P LSPT+VL +L LL WD + +E PETL+ D
Sbjct: 278 ------LSESALTPG-----AENTSKPSLSPTLVLNNSYLKLLQWDYQKKELPETLMTDG 326
Query: 256 TRLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRITKSLLEDFHSRP---E 312
RLQEL +L+QL ++A + L+ ++ G++ G P+ +L RI+ LLE + +
Sbjct: 327 ARLQELTEKLNQLKIIACLSLITNNMVGAITGGLPELASRLTRISAVLLEGMNKETFNLK 386
Query: 313 EAILTVSEQVSQEIHQSLKNMGLVALSSDNTASLMGQLQNIAKKENCVCSVIDQRIHLFL 372
E + ++ Q E++++L GL L+++ A+L+GQ +I +++N + S+ID+RI L++
Sbjct: 387 EVLNSIGIQTCVEVNKTLMERGLPTLNAEIQANLIGQFSSIEEEDNPIWSLIDKRIKLYM 446
Query: 373 KCCLVL-GVQRSLLDLPGGLTLIEAELAELGQKFVNLTHHNQQVFGPYYTEILKTLISPA 431
+ L L Q+ + +PGGL +I+ EL LG ++ N+ + N+QV+GP+Y IL+ L+
Sbjct: 447 RRLLCLPSPQKCMPPMPGGLAVIQQELEALGSQYANIVNLNKQVYGPFYANILRKLLFNE 506
Query: 432 QAL 434
+A+
Sbjct: 507 EAM 509
>gi|224493895 t-complex 11 (mouse) like 1 [Homo sapiens]
Length = 509
Score = 315 bits (806), Expect = 7e-86
Identities = 175/416 (42%), Positives = 251/416 (60%), Gaps = 12/416 (2%)
Query: 17 SLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLKEIKEILLSLLLPRQNRLRIEIEE 76
SL+ +VKE VH AFWD L QLS PP + A++L+ EIKE LLS LLP RLR +I E
Sbjct: 99 SLKKRVKEIVHKAFWDCLSVQLSEDPPAYDHAIKLVGEIKETLLSFLLPGHTRLRNQITE 158
Query: 77 ALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKLENITDPVWLLRGIFQV 136
LD+DL+KQEAE+GAL + L+++++ MM LCAP RDE V+KL++I + V L R IF V
Sbjct: 159 VLDLDLIKQEAENGALDISKLAEFIIGMMGTLCAPARDEEVKKLKDIKEIVPLFREIFSV 218
Query: 137 LGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAGDL-TM 195
L MK+DM N+ I S++PHL + S++YER KFQE+L +QP+ L+ T+WL +A+ DL T
Sbjct: 219 LDLMKVDMANFAISSIRPHLMQQSVEYERKKFQEILERQPNSLDFVTQWLEEASEDLMTQ 278
Query: 196 SPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLWDLENEEFPETLLMDR 255
++ +G P LSP V +L LL WD FPET+LMD+
Sbjct: 279 KYKHALPVGGMAAGSGDMPR--------LSPVAVQNYAYLKLLKWDHLQRPFPETVLMDQ 330
Query: 256 TRLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRITKSLLEDFH---SRPE 312
+R EL+ QL QLT++ +VLLV S + + F +KLK I K LL D H +
Sbjct: 331 SRFHELQLQLEQLTILGAVLLVTFSMAAPGISSQADFAEKLKMIVKILLTDMHLPSFHLK 390
Query: 313 EAILTVSEQVSQEIHQSLKNMGLVALSSDNTASLMGQLQNIAKKENCVCSVIDQRIHLFL 372
+ + T+ E+V E+ L G ++D L GQ+Q +A ++ + +++ RI FL
Sbjct: 391 DVLTTIGEKVCLEVSSCLSLCGSSPFTTDKETVLKGQIQAVASPDDPIRRIMESRILTFL 450
Query: 373 KCCLVLGVQRSLLDLPGGLTLIEAELAELGQKFVNLTHHNQQVFGPYYTEILKTLI 428
+ L G Q+ L +PGGL+ ++ EL E+ KF L ++N+ VF PYY IL ++
Sbjct: 451 ETYLASGHQKPLPTVPGGLSPVQRELEEVAIKFARLVNYNKMVFCPYYDAILSKIL 506
>gi|224493847 t-complex 11 (mouse) like 1 [Homo sapiens]
Length = 509
Score = 315 bits (806), Expect = 7e-86
Identities = 175/416 (42%), Positives = 251/416 (60%), Gaps = 12/416 (2%)
Query: 17 SLEGKVKETVHNAFWDHLKEQLSATPPDFSCALELLKEIKEILLSLLLPRQNRLRIEIEE 76
SL+ +VKE VH AFWD L QLS PP + A++L+ EIKE LLS LLP RLR +I E
Sbjct: 99 SLKKRVKEIVHKAFWDCLSVQLSEDPPAYDHAIKLVGEIKETLLSFLLPGHTRLRNQITE 158
Query: 77 ALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAPVRDEAVQKLENITDPVWLLRGIFQV 136
LD+DL+KQEAE+GAL + L+++++ MM LCAP RDE V+KL++I + V L R IF V
Sbjct: 159 VLDLDLIKQEAENGALDISKLAEFIIGMMGTLCAPARDEEVKKLKDIKEIVPLFREIFSV 218
Query: 137 LGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAGDL-TM 195
L MK+DM N+ I S++PHL + S++YER KFQE+L +QP+ L+ T+WL +A+ DL T
Sbjct: 219 LDLMKVDMANFAISSIRPHLMQQSVEYERKKFQEILERQPNSLDFVTQWLEEASEDLMTQ 278
Query: 196 SPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLWDLENEEFPETLLMDR 255
++ +G P LSP V +L LL WD FPET+LMD+
Sbjct: 279 KYKHALPVGGMAAGSGDMPR--------LSPVAVQNYAYLKLLKWDHLQRPFPETVLMDQ 330
Query: 256 TRLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRITKSLLEDFH---SRPE 312
+R EL+ QL QLT++ +VLLV S + + F +KLK I K LL D H +
Sbjct: 331 SRFHELQLQLEQLTILGAVLLVTFSMAAPGISSQADFAEKLKMIVKILLTDMHLPSFHLK 390
Query: 313 EAILTVSEQVSQEIHQSLKNMGLVALSSDNTASLMGQLQNIAKKENCVCSVIDQRIHLFL 372
+ + T+ E+V E+ L G ++D L GQ+Q +A ++ + +++ RI FL
Sbjct: 391 DVLTTIGEKVCLEVSSCLSLCGSSPFTTDKETVLKGQIQAVASPDDPIRRIMESRILTFL 450
Query: 373 KCCLVLGVQRSLLDLPGGLTLIEAELAELGQKFVNLTHHNQQVFGPYYTEILKTLI 428
+ L G Q+ L +PGGL+ ++ EL E+ KF L ++N+ VF PYY IL ++
Sbjct: 451 ETYLASGHQKPLPTVPGGLSPVQRELEEVAIKFARLVNYNKMVFCPYYDAILSKIL 506
>gi|58530840 desmoplakin isoform I [Homo sapiens]
Length = 2871
Score = 33.1 bits (74), Expect = 0.52
Identities = 73/342 (21%), Positives = 133/342 (38%), Gaps = 49/342 (14%)
Query: 16 LSLEGKVKETVHNAFWDHLKE-------------QLSATPPDFSCALELLKE-------- 54
+S E VK+ F + LKE +L T + SC + L+E
Sbjct: 1545 VSQERTVKDQDITRFQNSLKELQLQKQKVEEELNRLKRTASEDSCKRKKLEEELEGMRRS 1604
Query: 55 IKEILLSLLLPRQNRLRIEIEEALDMDLLKQEAE--HGALKVLYLSKYVLNMMALLCAPV 112
+KE + + Q + I + D L+Q+ + G L+ ++ L ++ +
Sbjct: 1605 LKEQAIKITNLTQQLEQASIVKKRSEDDLRQQRDVLDGHLREKQRTQEELRRLSSEVEAL 1664
Query: 113 RDEAVQKLENITDPVWLLRGIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAK-FQEL 171
R + +Q+ E++ ++ + I+ L E I+ ER + E
Sbjct: 1665 RRQLLQEQESVKQ------------AHLRNEHFQKAIEDKSRSLNESKIEIERLQSLTEN 1712
Query: 172 LNKQPSLLNHTTKWLTQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLC 231
L K+ +L + L DL +++ + S + +NN T+ L
Sbjct: 1713 LTKEHLMLEEELRNLRLEYDDLRRGRSEADSDKNATILELRSQLQISNNR-----TLEL- 1766
Query: 232 QGFLNLLLWDLEN-----EEFPETLLMDRTRLQELKSQLHQLTVMASVLLVASSFSGSVL 286
QG +N L + EN E+F + L R+QE K+Q Q+ LLV
Sbjct: 1767 QGLINDLQRERENLRQEIEKFQKQALEASNRIQESKNQCTQVVQERESLLVKIKVLEQDK 1826
Query: 287 FGSPQFVDKLKRITKSLLEDFHSRPEEAILTVSEQVSQEIHQ 328
+ D+L R KS LE +R ++ + +Q+ +++Q
Sbjct: 1827 ARLQRLEDELNR-AKSTLE-AETRVKQRLECEKQQIQNDLNQ 1866
>gi|29789058 WW and C2 domain containing 1 isoform 3 [Homo sapiens]
Length = 1113
Score = 32.7 bits (73), Expect = 0.67
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 31/183 (16%)
Query: 188 QAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTM----VLCQGFLNLLLWDLE 243
QA L+ +P + S SS++ PSP P SP M + FLN L + E
Sbjct: 519 QALRSLSGTPKSMTSLSPRSSLSSPSP--------PCSPLMADPLLAGDAFLNSL--EFE 568
Query: 244 NEEFPETL--------LMDRTRLQELKSQLHQL-----TVMASVLLVASSFSG----SVL 286
+ E TL +R RL+E ++ QL T L VA + SV
Sbjct: 569 DPELSATLCELSLGNSAQERYRLEEPGTEGKQLGQAVNTAQGCGLKVACVSAAVSDESVA 628
Query: 287 FGSPQFVDKLKRITKSLLEDFHSRPEEAILTVSEQVSQEIHQSLKNMGLVALSSDNTASL 346
S + ++R+ S F S EA+ Q++ + + K ++ + N ++L
Sbjct: 629 GDSGVYEASVQRLGASEAAAFDSDESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSAL 688
Query: 347 MGQ 349
+ Q
Sbjct: 689 LQQ 691
>gi|242247257 WW and C2 domain containing 1 isoform 2 [Homo sapiens]
Length = 1118
Score = 32.7 bits (73), Expect = 0.67
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 31/183 (16%)
Query: 188 QAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTM----VLCQGFLNLLLWDLE 243
QA L+ +P + S SS++ PSP P SP M + FLN L + E
Sbjct: 519 QALRSLSGTPKSMTSLSPRSSLSSPSP--------PCSPLMADPLLAGDAFLNSL--EFE 568
Query: 244 NEEFPETL--------LMDRTRLQELKSQLHQL-----TVMASVLLVASSFSG----SVL 286
+ E TL +R RL+E ++ QL T L VA + SV
Sbjct: 569 DPELSATLCELSLGNSAQERYRLEEPGTEGKQLGQAVNTAQGCGLKVACVSAAVSDESVA 628
Query: 287 FGSPQFVDKLKRITKSLLEDFHSRPEEAILTVSEQVSQEIHQSLKNMGLVALSSDNTASL 346
S + ++R+ S F S EA+ Q++ + + K ++ + N ++L
Sbjct: 629 GDSGVYEASVQRLGASEAAAFDSDESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSAL 688
Query: 347 MGQ 349
+ Q
Sbjct: 689 LQQ 691
>gi|242247251 WW and C2 domain containing 1 isoform 1 [Homo sapiens]
Length = 1119
Score = 32.7 bits (73), Expect = 0.67
Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 31/183 (16%)
Query: 188 QAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTM----VLCQGFLNLLLWDLE 243
QA L+ +P + S SS++ PSP P SP M + FLN L + E
Sbjct: 519 QALRSLSGTPKSMTSLSPRSSLSSPSP--------PCSPLMADPLLAGDAFLNSL--EFE 568
Query: 244 NEEFPETL--------LMDRTRLQELKSQLHQL-----TVMASVLLVASSFSG----SVL 286
+ E TL +R RL+E ++ QL T L VA + SV
Sbjct: 569 DPELSATLCELSLGNSAQERYRLEEPGTEGKQLGQAVNTAQGCGLKVACVSAAVSDESVA 628
Query: 287 FGSPQFVDKLKRITKSLLEDFHSRPEEAILTVSEQVSQEIHQSLKNMGLVALSSDNTASL 346
S + ++R+ S F S EA+ Q++ + + K ++ + N ++L
Sbjct: 629 GDSGVYEASVQRLGASEAAAFDSDESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSAL 688
Query: 347 MGQ 349
+ Q
Sbjct: 689 LQQ 691
>gi|196259796 hypothetical protein LOC375484 [Homo sapiens]
Length = 457
Score = 32.3 bits (72), Expect = 0.88
Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 145 VNYTIQSLQPHLQEHSIQYERAKFQELL-------NKQPSLLNHTTKWLTQA-AGDLTMS 196
+ Y +Q+L+ Q+ +++ +R Q+ + +KQP + KWL +A D
Sbjct: 155 LRYVVQTLEDDFQQ-TLRRQRQHLQQSIANMVLSCDKQPHNVRDVIKWLVKAVTEDGLTQ 213
Query: 197 PPTCPDTSDSSSVAGPSPNEAANNPEPLSPT--MVLCQ 232
PP TS + + S + ++ P T +++CQ
Sbjct: 214 PPNGNQTSSGTGILKASSSHPSSQPNLTKNTNQLIVCQ 251
>gi|55741473 HECT, C2 and WW domain containing E3 ubiquitin protein
ligase 2 [Homo sapiens]
Length = 1572
Score = 32.3 bits (72), Expect = 0.88
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 187 TQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEP 223
T A P P+ ++SS AGP+P E PEP
Sbjct: 520 THEAASFEDKPENLPELAESSLPAGPAPEEGEGGPEP 556
>gi|63252870 osteosarcoma amplified 9 isoform 4 precursor [Homo
sapiens]
Length = 652
Score = 32.0 bits (71), Expect = 1.1
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 50 ELLKEIKEILLSLLLPR-QNRLRIEIEEALDMDLLKQEAE 88
+LL E ++ L +LLP ++RLR E E+ LD D LK+E+E
Sbjct: 431 QLLGEFEKELEGILLPSDRDRLRSETEKELDPDGLKKESE 470
>gi|63252868 osteosarcoma amplified 9 isoform 3 precursor [Homo
sapiens]
Length = 597
Score = 32.0 bits (71), Expect = 1.1
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 50 ELLKEIKEILLSLLLPR-QNRLRIEIEEALDMDLLKQEAE 88
+LL E ++ L +LLP ++RLR E E+ LD D LK+E+E
Sbjct: 431 QLLGEFEKELEGILLPSDRDRLRSETEKELDPDGLKKESE 470
>gi|42734393 forkhead box R1 [Homo sapiens]
Length = 292
Score = 32.0 bits (71), Expect = 1.1
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 132 GIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWL--TQA 189
G +V GR K + + T+ S QP +E A E L++ S + K + +
Sbjct: 66 GKLEVSGRRKREDLTSTLPSSQPPQKEEDASCSEAAGVESLSQSSSKRSPPRKRFAFSPS 125
Query: 190 AGDLTMSPPTCPDTSDSSSVAGPSPNEAA 218
+LT D DSSS+A PSP++ A
Sbjct: 126 TWELT-EEEEAEDQEDSSSMALPSPHKRA 153
>gi|28076869 serine (or cysteine) proteinase inhibitor, clade B
(ovalbumin), member 4 [Homo sapiens]
Length = 390
Score = 32.0 bits (71), Expect = 1.1
Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 257 RLQELKSQLHQLTVMASVLLVASSFSGSVLFGSPQFVDKLKRITKSLLE--DFHSRPEEA 314
+ Q+L ++ ++ T + + F +++D +K+ ++ +E DF + PEE+
Sbjct: 84 QFQKLLTEFNKSTDAYELKIANKLFGEKTYQFLQEYLDAIKKFYQTSVESTDFANAPEES 143
Query: 315 ILTVSEQVSQEIHQSLKNM---GLV----ALSSDNTASLMGQLQNIAKKEN 358
++ V + ++ +KN+ G + L N GQ +N KKEN
Sbjct: 144 RKKINSWVESQTNEKIKNLFPDGTIGNDTTLVLVNAIYFKGQWENKFKKEN 194
>gi|190684710 EFR3 homolog B [Homo sapiens]
Length = 817
Score = 31.6 bits (70), Expect = 1.5
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 253 MDRTRLQELKSQLHQLTVMASVLLVASSFSGSVLFGS--PQFVDKLKRITKSLLEDFHSR 310
+D R E +++L Q+ ++ S+L V++ F + + + F+D+L ++ +L+ED R
Sbjct: 414 VDTGRTGENRNRLTQIMLLKSLLQVSTGFQCNNMMSALPSNFLDRL--LSTALMEDAEIR 471
Query: 311 PEEAILTVSEQVSQEI--HQSLKNMGLVALSSDNTASLMGQLQNIAKKENCVCSVIDQRI 368
L V E + I H + ++ SD + L ++ ++++ Q++
Sbjct: 472 -----LFVLEILISFIDRHGNRHKFSTISTLSDISV-LKLKVDKCSRQDTVFMKKHSQQL 525
Query: 369 --HLFLKCCLVLGVQRSLLDLPGGLTLIEAELA 399
H++L C VQ+ L G L LI ELA
Sbjct: 526 YRHIYLSCKEETNVQKHYEALYGLLALISIELA 558
>gi|13540614 coiled-coil domain containing 130 [Homo sapiens]
Length = 396
Score = 31.6 bits (70), Expect = 1.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 188 QAAGDLTMSPPTCP-DTSDSSSVAGPSPNEAANNPEPLSP 226
+AA D MSP CP +T+++ + P E + +PLSP
Sbjct: 324 EAAQDRPMSPGDCPPETTETPKCSSPRGQEGSRQDKPLSP 363
>gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens]
Length = 858
Score = 31.2 bits (69), Expect = 2.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 173 NKQPSLLNHTTKWLTQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNP 221
N QPS + T + + A DL+ T + + +SS+AG +P N P
Sbjct: 511 NIQPSPAHETGQGIVHALTDLSSPGMTSGNGNSASSIAGTAPQNGENKP 559
>gi|19743886 regulatory factor X4 isoform a [Homo sapiens]
Length = 641
Score = 30.8 bits (68), Expect = 2.6
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 132 GIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAG 191
G F ++ M D V Y ++SL H QE + + RA E + LT+AA
Sbjct: 357 GSFHLIHLMFDDYVLYLLESL--HCQERANELMRAMKGEGSTAEV----REEIILTEAAA 410
Query: 192 DLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLWDL 242
P+ ++SV P P+ +NP P T + G + W L
Sbjct: 411 PTPSPVPSFSPAKSATSVEVPPPSSPVSNPSP-EYTGLSTTGAMQSYTWSL 460
>gi|47132527 regulatory factor X4 isoform c [Homo sapiens]
Length = 735
Score = 30.8 bits (68), Expect = 2.6
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 132 GIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAG 191
G F ++ M D V Y ++SL H QE + + RA E + LT+AA
Sbjct: 451 GSFHLIHLMFDDYVLYLLESL--HCQERANELMRAMKGEGSTAEV----REEIILTEAAA 504
Query: 192 DLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQGFLNLLLWDL 242
P+ ++SV P P+ +NP P T + G + W L
Sbjct: 505 PTPSPVPSFSPAKSATSVEVPPPSSPVSNPSP-EYTGLSTTGAMQSYTWSL 554
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 30.8 bits (68), Expect = 2.6
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 1/103 (0%)
Query: 126 PVWLLRGIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKW 185
P++ + G+F + ++ + SL Q++ + A Q+ +Q
Sbjct: 3334 PMYGMEGLFPYSPALSQALMGLSPGSLLQQYQQYQQSLQEA-IQQQQQRQLQQQQQQKVQ 3392
Query: 186 LTQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTM 228
Q T PP P + P P E N P +SP +
Sbjct: 3393 QQQPKASQTPVPPGAPSPDKDPAKESPKPEEQKNTPREVSPLL 3435
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 30.8 bits (68), Expect = 2.6
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 190 AGDLTMSP-PTCPDTSDSSSVAGPSP--NEAANNPEPLSPTMV 229
AG T SP P P TSDS S +G + EA + P+P SP ++
Sbjct: 766 AGSRTCSPAPIPPHTSDSCSKSGAASLGEEARDTPQPSSPLVL 808
>gi|148833496 interferon regulatory factor 5 isoform b [Homo
sapiens]
Length = 498
Score = 30.4 bits (67), Expect = 3.3
Identities = 31/90 (34%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 164 ERAKFQELLNKQPSL-LNHTTKWLTQAAGDLTMSPPTC-PDTSDSSSVAGPSPNEAANNP 221
E + +EL PSL L KW T+ PPT P T V GP A +P
Sbjct: 143 EEEEEEELQRMLPSLSLTEDVKW-PPTLQPPTLRPPTLQPPTLQPPVVLGPP----APDP 197
Query: 222 EPLSPTMVLCQGFLNLLLWDLENEEFPETL 251
PL+P GF LL LE P +L
Sbjct: 198 SPLAPPPGNPAGFRELLSEVLEPGPLPASL 227
>gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens]
Length = 498
Score = 30.4 bits (67), Expect = 3.3
Identities = 31/90 (34%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 164 ERAKFQELLNKQPSL-LNHTTKWLTQAAGDLTMSPPTC-PDTSDSSSVAGPSPNEAANNP 221
E + +EL PSL L KW T+ PPT P T V GP A +P
Sbjct: 143 EEEEEEELQRMLPSLSLTEDVKW-PPTLQPPTLRPPTLQPPTLQPPVVLGPP----APDP 197
Query: 222 EPLSPTMVLCQGFLNLLLWDLENEEFPETL 251
PL+P GF LL LE P +L
Sbjct: 198 SPLAPPPGNPAGFRELLSEVLEPGPLPASL 227
>gi|15011898 regulatory factor X4 isoform b [Homo sapiens]
Length = 563
Score = 30.4 bits (67), Expect = 3.3
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 132 GIFQVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAG 191
G F ++ M D V Y ++SL H QE + + RA E + LT+AA
Sbjct: 460 GSFHLIHLMFDDYVLYLLESL--HCQERANELMRAMKGEGSTAEV----REEIILTEAAA 513
Query: 192 DLTMSPPTCPDTSDSSSVAGPSPNEAANNPEP 223
P+ ++SV P P+ +NP P
Sbjct: 514 PTPSPVPSFSPAKSATSVEVPPPSSPVSNPSP 545
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 30.4 bits (67), Expect = 3.3
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 173 NKQPSLLNHTTKWLTQAAGDLTMSPPTCPDTSDSSSVAGPSPNEAANNPEPLSP 226
+ +P+ H LT GD +PP P ++ SS PSP+ ++++P P P
Sbjct: 166 SSRPTCARH----LTLGTGDGGPAPPPAPSSASSS----PSPSPSSSSPSPPPP 211
>gi|209977080 REST corepressor 3 isoform a [Homo sapiens]
Length = 553
Score = 30.4 bits (67), Expect = 3.3
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 135 QVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAGDLT 194
+ +G++K VNY + +L+E ++E + + N S L TK + +
Sbjct: 377 KTVGQVKNFFVNYRRRF---NLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKS 433
Query: 195 MSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQ 232
T + GPSP ++ P P +P L Q
Sbjct: 434 TDEEEEAQTPQAPRTLGPSPPAPSSTPTPTAPIATLNQ 471
>gi|8922733 REST corepressor 3 isoform d [Homo sapiens]
Length = 495
Score = 30.4 bits (67), Expect = 3.3
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
Query: 135 QVLGRMKMDMVNYTIQSLQPHLQEHSIQYERAKFQELLNKQPSLLNHTTKWLTQAAGDLT 194
+ +G++K VNY + +L+E ++E + + N S L TK + +
Sbjct: 319 KTVGQVKNFFVNYRRRF---NLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKS 375
Query: 195 MSPPTCPDTSDSSSVAGPSPNEAANNPEPLSPTMVLCQ 232
T + GPSP ++ P P +P L Q
Sbjct: 376 TDEEEEAQTPQAPRTLGPSPPAPSSTPTPTAPIATLNQ 413
>gi|110347418 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 30.4 bits (67), Expect = 3.3
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 52 LKEIKEILLSLLLPRQNRLRIEIEEALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAP 111
LKEIK IL + P +L+ E L+ + +E EH LS+ + LL
Sbjct: 192 LKEIKTILEEEITPTIQKLKEERSSYLEYQKVMREIEH-------LSRLYIAYQFLLAED 244
Query: 112 VRDEAVQKLENITDPVWLLRGIFQVLGRMKMDMVNYTIQSLQ 153
+ + ++L+ + D V L+ + K+ +N+ I+ L+
Sbjct: 245 TKVRSAEELKEMQDKVIKLQEELSENDK-KIKALNHEIEELE 285
>gi|110347425 structural maintenance of chromosomes 2 [Homo sapiens]
Length = 1197
Score = 30.4 bits (67), Expect = 3.3
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 52 LKEIKEILLSLLLPRQNRLRIEIEEALDMDLLKQEAEHGALKVLYLSKYVLNMMALLCAP 111
LKEIK IL + P +L+ E L+ + +E EH LS+ + LL
Sbjct: 192 LKEIKTILEEEITPTIQKLKEERSSYLEYQKVMREIEH-------LSRLYIAYQFLLAED 244
Query: 112 VRDEAVQKLENITDPVWLLRGIFQVLGRMKMDMVNYTIQSLQ 153
+ + ++L+ + D V L+ + K+ +N+ I+ L+
Sbjct: 245 TKVRSAEELKEMQDKVIKLQEELSENDK-KIKALNHEIEELE 285
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,126,933
Number of Sequences: 37866
Number of extensions: 690335
Number of successful extensions: 2828
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 2797
Number of HSP's gapped (non-prelim): 63
length of query: 441
length of database: 18,247,518
effective HSP length: 105
effective length of query: 336
effective length of database: 14,271,588
effective search space: 4795253568
effective search space used: 4795253568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.