Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TCP11L1 Sequence: fasta or formatted (509aa) NCBI GI: 224493895
Description:

t-complex 11 (mouse) like 1

Referenced in:

Testes and Sperm

Other entries for this name:
alt mRNA [509aa] t-complex 11 (mouse) like 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         35           2
 C cysteine            1.2          6           1
 D aspartate           5.5         28           2
 E glutamate           8.6         44           2
 F phenylalanine       3.7         19           1
 G glycine             4.3         22           2
 H histidine           2.4         12           1
 I isoleucine          5.7         29           2
 K lysine              7.1         36           2
 L leucine            12.6         64           2
 M methionine          3.1         16           2
 N asparagine          2.8         14           1
 P proline             5.5         28           2
 Q glutamine           4.7         24           2
 R arginine            4.1         21           2
 S serine              7.9         40           3
 T threonine           4.1         21           2
 V valine              7.5         38           2
 W tryptophan          0.6          3           1
 Y tyrosine            1.8          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   t-complex 11 (mouse) like 1 
TCP11L1               1.000   t-complex 11 (mouse) like 1 
TCP11L2               0.390   t-complex 11 (mouse) like 2 
TCP11                 0.325   t-complex 11 isoform 1 
TCP11                 0.299   t-complex 11 isoform 2 
CDC42BPA              0.008   CDC42-binding protein kinase alpha isoform B 
NF1                   0.007   neurofibromin isoform 1 
NF1                   0.007   neurofibromin isoform 2 
OS9                   0.006   osteosarcoma amplified 9 isoform 4 precursor 
OS9                   0.006   osteosarcoma amplified 9 isoform 3 precursor 
TRIP11                0.006   thyroid hormone receptor interactor 11 
P2RX7                 0.005   purinergic receptor P2X7 
SPEF2                 0.005   KPL2 protein isoform 1 
PPP1R10               0.005   protein phosphatase 1, regulatory subunit 10 
BDP1                  0.005   transcription factor-like nuclear regulator 
C6orf70               0.005   hypothetical protein LOC55780 
UBE4A                 0.004   ubiquitination factor E4A 
HOOK1                 0.004   hook homolog 1 
GOLGA4                0.004   golgi autoantigen, golgin subfamily a, 4 
LHX8                  0.004   LIM homeobox 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press