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Search of human proteins with 85068580
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|85068580 homeobox B7 [Homo sapiens]
(217 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|85068580 homeobox B7 [Homo sapiens] 448 e-126
gi|24497556 homeobox A7 [Homo sapiens] 245 2e-65
gi|23503237 homeobox B6 [Homo sapiens] 149 1e-36
gi|13273317 homeobox B8 [Homo sapiens] 143 1e-34
gi|13489077 homeobox A6 [Homo sapiens] 137 5e-33
gi|12056969 homeobox C8 [Homo sapiens] 135 2e-32
gi|24497544 homeobox C6 isoform 2 [Homo sapiens] 134 6e-32
gi|4758554 homeobox C6 isoform 1 [Homo sapiens] 134 6e-32
gi|23397672 homeobox D4 [Homo sapiens] 133 1e-31
gi|24497517 homeobox A5 [Homo sapiens] 131 4e-31
gi|4504469 homeobox B5 [Homo sapiens] 129 1e-30
gi|15029506 homeobox D8 [Homo sapiens] 127 7e-30
gi|24497538 homeobox C4 [Homo sapiens] 126 2e-29
gi|24497540 homeobox C4 [Homo sapiens] 126 2e-29
gi|11321638 homeobox C5 [Homo sapiens] 124 5e-29
gi|13273315 homeobox B4 [Homo sapiens] 120 1e-27
gi|148613882 homeobox A4 [Homo sapiens] 119 2e-27
gi|194363768 homeobox D9 [Homo sapiens] 100 2e-21
gi|19923391 homeobox D3 [Homo sapiens] 96 2e-20
gi|24497547 homeobox C9 [Homo sapiens] 94 7e-20
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 94 9e-20
gi|182765442 homeobox A10 isoform a [Homo sapiens] 94 9e-20
gi|84105335 mesenchyme homeobox 2 [Homo sapiens] 92 3e-19
gi|169636435 caudal type homeobox 2 [Homo sapiens] 92 3e-19
gi|10140847 homeobox A2 [Homo sapiens] 91 6e-19
gi|24497515 homeobox A3 isoform b [Homo sapiens] 91 8e-19
gi|24497513 homeobox A3 isoform a [Homo sapiens] 91 8e-19
gi|13562112 homeobox A3 isoform a [Homo sapiens] 91 8e-19
gi|89257348 homeo box HB9 [Homo sapiens] 91 8e-19
gi|84570137 homeobox B3 [Homo sapiens] 90 1e-18
>gi|85068580 homeobox B7 [Homo sapiens]
Length = 217
Score = 448 bits (1152), Expect = e-126
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 1 MSSLYYANTLFSKYPASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYP 60
MSSLYYANTLFSKYPASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYP
Sbjct: 1 MSSLYYANTLFSKYPASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYP 60
Query: 61 GGGGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAA 120
GGGGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAA
Sbjct: 61 GGGGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAA 120
Query: 121 ESNFRIYPWMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQ 180
ESNFRIYPWMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQ
Sbjct: 121 ESNFRIYPWMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQ 180
Query: 181 IKIWFQNRRMKWKKENKTAGPGTTGQDRAEAEEEEEE 217
IKIWFQNRRMKWKKENKTAGPGTTGQDRAEAEEEEEE
Sbjct: 181 IKIWFQNRRMKWKKENKTAGPGTTGQDRAEAEEEEEE 217
>gi|24497556 homeobox A7 [Homo sapiens]
Length = 230
Score = 245 bits (625), Expect = 2e-65
Identities = 134/235 (57%), Positives = 161/235 (68%), Gaps = 29/235 (12%)
Query: 1 MSSLYYANTLFSKYPASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYP 60
MSS YY N LFSKY A +S+F E TSC+FA N QR GYGAG+GA FA+++ GLY
Sbjct: 1 MSSSYYVNALFSKYTAGASLFQNA---EPTSCSFAPNSQRSGYGAGAGA-FASTVPGLY- 55
Query: 61 GGGGMAGQSAAGVYAAGYGLEPSSF-NMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDL- 118
+ +A+GYGL ++ N+ CA ++QN+ G+C S A GA ++ D
Sbjct: 56 ---NVNSPLYQSPFASGYGLGADAYGNLPCASYDQNIPGLC---SDLAKGACDKTDEGAL 109
Query: 119 --AAESNFRIYPWMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCL 176
AAE+NFRIYPWMRSSG DRKRGRQTYTRYQTLELEKEFH+NRYLTRRRRIEIAH LCL
Sbjct: 110 HGAAEANFRIYPWMRSSGPDRKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCL 169
Query: 177 TERQIKIWFQNRRMKWKKENKTAGP--------------GTTGQDRAEAEEEEEE 217
TERQIKIWFQNRRMKWKKE+K GP T D+A+ E+++EE
Sbjct: 170 TERQIKIWFQNRRMKWKKEHKDEGPTAAAAPEGAVPSAAATAAADKADEEDDDEE 224
>gi|23503237 homeobox B6 [Homo sapiens]
Length = 224
Score = 149 bits (377), Expect = 1e-36
Identities = 99/234 (42%), Positives = 119/234 (50%), Gaps = 33/234 (14%)
Query: 3 SLYYANTLFSKYPASSSVFATGAFPEQTSCAFASNPQRPG-YGAGSGASFAASMQGLYPG 61
S Y+ N+ F AS G P +S P YG G G + YP
Sbjct: 2 SSYFVNSTFPVTLASGQESFLGQLPLYSSGYADPLRHYPAPYGPGPGQDKGFATSSYYPP 61
Query: 62 GGGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAE 121
GG G++A YG P+ + E+ + G + E R SD A +
Sbjct: 62 AGGGYGRAAP----CDYGPAPAFYR------EKESACALSGADEQPPFHPEPRKSDCAQD 111
Query: 122 SNF-----------RIYPWMR--------SSGTDRKRGRQTYTRYQTLELEKEFHYNRYL 162
+ +YPWM+ S G +RGRQTYTRYQTLELEKEFHYNRYL
Sbjct: 112 KSVFGETEEQKCSTPVYPWMQRMNSCNSSSFGPSGRRGRQTYTRYQTLELEKEFHYNRYL 171
Query: 163 TRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAGPGTTGQDRAEAEEEEE 216
TRRRRIEIAH LCLTERQIKIWFQNRRMKWKKE+K + Q AE EEE++
Sbjct: 172 TRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLL---SASQLSAEEEEEKQ 222
>gi|13273317 homeobox B8 [Homo sapiens]
Length = 243
Score = 143 bits (360), Expect = 1e-34
Identities = 92/230 (40%), Positives = 126/230 (54%), Gaps = 20/230 (8%)
Query: 3 SLYYANTLFSKYPASSSVFATGAFPEQTSCAFASN-PQRPG--YGAGSGASFA--ASMQG 57
S Y+ N+LFSKY S+ P C FA + RP YG SG SF + +Q
Sbjct: 2 SSYFVNSLFSKYKTGESLR-----PNYYDCGFAQDLGGRPTVVYGPSSGGSFQHPSQIQE 56
Query: 58 LYPGGGGMAG----QSAAGVYAAG-----YGLEPSSFNMHCAPFEQNLSGVCPGDSAKAA 108
Y G ++ Q+ V G YG +P + +L A A+
Sbjct: 57 FYHGPSSLSTAPYQQNPCAVACHGDPGNFYGYDPLQRQSLFGAQDPDLVQYADCKLAAAS 116
Query: 109 GAKEQRDSDLAAESNFRIYPWMR-SSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRR 167
G E+ + + S +++PWMR + R+RGRQTY+RYQTLELEKEF +N YLTR+RR
Sbjct: 117 GLGEEAEGSEQSPSPTQLFPWMRPQAAAGRRRGRQTYSRYQTLELEKEFLFNPYLTRKRR 176
Query: 168 IEIAHTLCLTERQIKIWFQNRRMKWKKENKTAGPGTTGQDRAEAEEEEEE 217
IE++H L LTERQ+KIWFQNRRMKWKKEN ++ ++ E E+++ E
Sbjct: 177 IEVSHALGLTERQVKIWFQNRRMKWKKENNKDKFPSSKCEQEELEKQKLE 226
>gi|13489077 homeobox A6 [Homo sapiens]
Length = 233
Score = 137 bits (346), Expect = 5e-33
Identities = 91/215 (42%), Positives = 112/215 (52%), Gaps = 32/215 (14%)
Query: 12 SKYPASS---SVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYPGGGGMAGQ 68
+ Y ASS + + F +Q++ A N YGA S + G P G G Q
Sbjct: 40 ASYGASSLPDKTYTSPCFYQQSNSVLACNRASYEYGASCFYS-DKDLSGASPSGSGK--Q 96
Query: 69 SAAGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYP 128
G Y +H +P +Q DS+ G K D + +YP
Sbjct: 97 RGPGDY------------LHFSPEQQYKP-----DSSSGQG-KALHDEGADRKYTSPVYP 138
Query: 129 WMRSS--------GTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQ 180
WM+ G+ +RGRQTYTRYQTLELEKEFH+NRYLTRRRRIEIA+ LCLTERQ
Sbjct: 139 WMQRMNSCAGAVYGSHGRRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIANALCLTERQ 198
Query: 181 IKIWFQNRRMKWKKENKTAGPGTTGQDRAEAEEEE 215
IKIWFQNRRMKWKKENK + +EA+ E
Sbjct: 199 IKIWFQNRRMKWKKENKLINSTQPSGEDSEAKAGE 233
>gi|12056969 homeobox C8 [Homo sapiens]
Length = 242
Score = 135 bits (341), Expect = 2e-32
Identities = 94/246 (38%), Positives = 123/246 (50%), Gaps = 48/246 (19%)
Query: 3 SLYYANTLFSKYPASSSVFATGAFPEQTSCAFASNPQRPG---YGAGSGAS----FAASM 55
S Y+ N LFSKY A S+ P C F + R YG G A + +
Sbjct: 2 SSYFVNPLFSKYKAGESLE-----PAYYDCRFPQSVGRSHALVYGPGGSAPGFQHASHHV 56
Query: 56 QGLYPGGGGMAGQSAAGVYAAGYGLEPSSFNMH--CAPF-------EQNLSGVCPGDSAK 106
Q + G +G+ +GY P S + H + F Q+L G + +
Sbjct: 57 QDFFHHG-------TSGISNSGYQQNPCSLSCHGDASKFYGYEALPRQSLYG-----AQQ 104
Query: 107 AAGAKEQRDSDLAAESNFR--------------IYPWMRSSGTDRKRGRQTYTRYQTLEL 152
A + D +A +N ++PWMR R+ GRQTY+RYQTLEL
Sbjct: 105 EASVVQYPDCKSSANTNSSEGQGHLNQNSSPSLMFPWMRPHAPGRRSGRQTYSRYQTLEL 164
Query: 153 EKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKE-NKTAGPGTTGQDRAEA 211
EKEF +N YLTR+RRIE++H L LTERQ+KIWFQNRRMKWKKE NK PG +++ E
Sbjct: 165 EKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNKDKLPGARDEEKVEE 224
Query: 212 EEEEEE 217
E EEE
Sbjct: 225 EGNEEE 230
>gi|24497544 homeobox C6 isoform 2 [Homo sapiens]
Length = 153
Score = 134 bits (337), Expect = 6e-32
Identities = 69/127 (54%), Positives = 85/127 (66%), Gaps = 14/127 (11%)
Query: 105 AKAAGAKEQRDSDLAAESNFRIYPWMRSS--------GTDRKRGRQTYTRYQTLELEKEF 156
A+ +++ R + +++ +IYPWM+ G DR+RGRQ Y+RYQTLELEKEF
Sbjct: 19 AQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEF 78
Query: 157 HYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKT------AGPGTTGQDRAE 210
H+NRYLTRRRRIEIA+ LCLTERQIKIWFQNRRMKWKKE+ G G T
Sbjct: 79 HFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGG 138
Query: 211 AEEEEEE 217
EE+ EE
Sbjct: 139 KEEKREE 145
>gi|4758554 homeobox C6 isoform 1 [Homo sapiens]
Length = 235
Score = 134 bits (337), Expect = 6e-32
Identities = 69/127 (54%), Positives = 85/127 (66%), Gaps = 14/127 (11%)
Query: 105 AKAAGAKEQRDSDLAAESNFRIYPWMRSS--------GTDRKRGRQTYTRYQTLELEKEF 156
A+ +++ R + +++ +IYPWM+ G DR+RGRQ Y+RYQTLELEKEF
Sbjct: 101 AQDFSSEQGRTAPQDQKASIQIYPWMQRMNSHSGVGYGADRRRGRQIYSRYQTLELEKEF 160
Query: 157 HYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKT------AGPGTTGQDRAE 210
H+NRYLTRRRRIEIA+ LCLTERQIKIWFQNRRMKWKKE+ G G T
Sbjct: 161 HFNRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTSTLSGGGGGATADSLGG 220
Query: 211 AEEEEEE 217
EE+ EE
Sbjct: 221 KEEKREE 227
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 133 bits (335), Expect = 1e-31
Identities = 89/196 (45%), Positives = 107/196 (54%), Gaps = 33/196 (16%)
Query: 43 YGAGS-GASFAASMQGLYP---------GGGGMAGQSAAGVYAAGYGLEPSSFNMH-CAP 91
YG G+ GA F GLYP GG G SA + A G+G EP H AP
Sbjct: 37 YGGGAQGADFQPP--GLYPRPDFGEQPFGGSGPGPGSA--LPARGHGQEPGGPGGHYAAP 92
Query: 92 FEQNLS------GVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRS----------SGT 135
E + PG A + +Q S A + +YPWM+ +G
Sbjct: 93 GEPCPAPPAPPPAPLPGARAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGG 152
Query: 136 DRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKE 195
+ KR R YTR Q LELEKEFH+NRYLTRRRRIEIAHTLCL+ERQIKIWFQNRRMKWKK+
Sbjct: 153 EPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKD 212
Query: 196 NKTAGPGTTGQDRAEA 211
+K P T G+ + +
Sbjct: 213 HKL--PNTKGRSSSSS 226
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 131 bits (330), Expect = 4e-31
Identities = 78/197 (39%), Positives = 102/197 (51%), Gaps = 15/197 (7%)
Query: 16 ASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGL-------YPGGGGMAGQ 68
+ S F +G + + ++ P P Y + ++ + L PG G
Sbjct: 59 SGSGHFGSGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLPCSAVAPSPGSDSHHGG 118
Query: 69 SAAGVYAAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYP 128
+ ++G + S ++ SG A + A Q + A + +IYP
Sbjct: 119 KNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYP 178
Query: 129 WMRS--------SGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQ 180
WMR G + KR R YTRYQTLELEKEFH+NRYLTRRRRIEIAH LCL+ERQ
Sbjct: 179 WMRKLHISHDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQ 238
Query: 181 IKIWFQNRRMKWKKENK 197
IKIWFQNRRMKWKK+NK
Sbjct: 239 IKIWFQNRRMKWKKDNK 255
>gi|4504469 homeobox B5 [Homo sapiens]
Length = 269
Score = 129 bits (325), Expect = 1e-30
Identities = 88/208 (42%), Positives = 108/208 (51%), Gaps = 40/208 (19%)
Query: 16 ASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAAGVYA 75
ASSS F GA E +S AF + Q P + + + +S + L G G +
Sbjct: 61 ASSSHF--GAVGE-SSRAFPAPAQEPRFRQAASSCSLSSPESLPCTNGDSHGAKPSASSP 117
Query: 76 AGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNFR---------- 125
+ SS N + + D A A+ E+ S L++ S R
Sbjct: 118 SDQATSASS--------SANFTEI---DEASASSEPEEAASQLSSPSLARAQPEPMATST 166
Query: 126 ---------IYPWMRS-------SGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIE 169
I+PWMR +G D KR R YTRYQTLELEKEFH+NRYLTRRRRIE
Sbjct: 167 AAPEGQTPQIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIE 226
Query: 170 IAHTLCLTERQIKIWFQNRRMKWKKENK 197
IAH LCL+ERQIKIWFQNRRMKWKK+NK
Sbjct: 227 IAHALCLSERQIKIWFQNRRMKWKKDNK 254
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 127 bits (319), Expect = 7e-30
Identities = 98/285 (34%), Positives = 130/285 (45%), Gaps = 73/285 (25%)
Query: 3 SLYYANTLFSKYPASSSVFATGAF---PEQTSCAFAS----------------------- 36
S Y+ N L+SKY A+++ A P C FA
Sbjct: 2 SSYFVNPLYSKYKAAAAAAAAAGEAINPTYYDCHFAPEVGGRHAAAAAALQLYGNSAAGF 61
Query: 37 -----------NPQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAA-------------- 71
+P P G G G + +PGGG A A
Sbjct: 62 PHAPPQAHAHPHPSPPPSGTGCGGREGRGQEYFHPGGGSPAAAYQAAPPPPPHPPPPPPP 121
Query: 72 ----GVYAAGYGLEPSSF----NMHCAPF---EQNLSGVCPGDSAKAAG-AKEQRDSDLA 119
G+ G EP+ F N+ P +Q V D ++G E D
Sbjct: 122 PPCGGIACHG---EPAKFYGYDNLQRQPIFTTQQEAELVQYPDCKSSSGNIGEDPDHLNQ 178
Query: 120 AESNFRIYPWMR-SSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTE 178
+ S +++PWMR + R+RGRQTY+R+QTLELEKEF +N YLTR+RRIE++H L LTE
Sbjct: 179 SSSPSQMFPWMRPQAAPGRRRGRQTYSRFQTLELEKEFLFNPYLTRKRRIEVSHALALTE 238
Query: 179 RQIKIWFQNRRMKWKKE-NKTAGPGT-----TGQDRAEAEEEEEE 217
RQ+KIWFQNRRMKWKKE NK P + G+ + EA+E EE+
Sbjct: 239 RQVKIWFQNRRMKWKKENNKDKFPVSRQEVKDGETKKEAQELEED 283
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 126 bits (316), Expect = 2e-29
Identities = 74/170 (43%), Positives = 90/170 (52%), Gaps = 20/170 (11%)
Query: 38 PQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQNLS 97
P RP Y + S+QG PG G + AG + P C P + +
Sbjct: 57 PPRPSYPERQYS--CTSLQG--PGNSRGHGPAQAGHH------HPEKSQSLCEPAPLSGA 106
Query: 98 GVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRS----------SGTDRKRGRQTYTRY 147
P + A AA +YPWM+ +G + KR R YTR
Sbjct: 107 SASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQ 166
Query: 148 QTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
Q LELEKEFHYNRYLTRRRRIEIAH+LCL+ERQIKIWFQNRRMKWKK+++
Sbjct: 167 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 126 bits (316), Expect = 2e-29
Identities = 74/170 (43%), Positives = 90/170 (52%), Gaps = 20/170 (11%)
Query: 38 PQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQNLS 97
P RP Y + S+QG PG G + AG + P C P + +
Sbjct: 57 PPRPSYPERQYS--CTSLQG--PGNSRGHGPAQAGHH------HPEKSQSLCEPAPLSGA 106
Query: 98 GVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRS----------SGTDRKRGRQTYTRY 147
P + A AA +YPWM+ +G + KR R YTR
Sbjct: 107 SASPSPAPPACSQPAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQ 166
Query: 148 QTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
Q LELEKEFHYNRYLTRRRRIEIAH+LCL+ERQIKIWFQNRRMKWKK+++
Sbjct: 167 QVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHR 216
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 124 bits (312), Expect = 5e-29
Identities = 78/166 (46%), Positives = 90/166 (54%), Gaps = 23/166 (13%)
Query: 36 SNPQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAAGVYAAGYGLEPSSFNMHCAPFEQN 95
++P RP A + A P GM Q AA LE + + EQ
Sbjct: 69 AHPDRPACSAAAAPGHAPGRDEAAPLNPGMYSQKAARP-----ALEERAKSSGEIKEEQA 123
Query: 96 LSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMR----SSGTDRKRGRQTYTRYQTLE 151
+G G S A + IYPWM S TD KR R +YTRYQTLE
Sbjct: 124 QTGQPAGLSQPPAPPQ--------------IYPWMTKLHMSHETDGKRSRTSYTRYQTLE 169
Query: 152 LEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
LEKEFH+NRYLTRRRRIEIA+ LCL ERQIKIWFQNRRMKWKK++K
Sbjct: 170 LEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSK 215
>gi|13273315 homeobox B4 [Homo sapiens]
Length = 251
Score = 120 bits (300), Expect = 1e-27
Identities = 56/82 (68%), Positives = 63/82 (76%), Gaps = 10/82 (12%)
Query: 126 IYPWMRS----------SGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLC 175
+YPWMR +G + KR R YTR Q LELEKEFHYNRYLTRRRR+EIAH LC
Sbjct: 141 VYPWMRKVHVSTVNPNYAGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALC 200
Query: 176 LTERQIKIWFQNRRMKWKKENK 197
L+ERQIKIWFQNRRMKWKK++K
Sbjct: 201 LSERQIKIWFQNRRMKWKKDHK 222
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 119 bits (299), Expect = 2e-27
Identities = 57/96 (59%), Positives = 67/96 (69%), Gaps = 10/96 (10%)
Query: 126 IYPWMRS----------SGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLC 175
+YPWM+ +G + KR R YTR Q LELEKEFH+NRYLTRRRRIEIAHTLC
Sbjct: 194 VYPWMKKIHVSAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 253
Query: 176 LTERQIKIWFQNRRMKWKKENKTAGPGTTGQDRAEA 211
L+ERQ+KIWFQNRRMKWKK++K + A A
Sbjct: 254 LSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNSASA 289
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 99.8 bits (247), Expect = 2e-21
Identities = 69/185 (37%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Query: 17 SSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAAGVYAA 76
SSS + + ++T C+ A Q S SF GG G G
Sbjct: 178 SSSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTG-PGAGIGAATGT 236
Query: 77 GYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRSSGTD 136
G EPS+ + H PG S K + + + N W+ + T
Sbjct: 237 GGSSEPSACSDH----------PIPGCSLKEEEKQHSQPQQQQLDPNNPAANWIHARSTR 286
Query: 137 RKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKEN 196
+KR YT+YQTLELEKEF +N YLTR RR E+A L LTERQ+KIWFQNRRMK KK +
Sbjct: 287 KKRC--PYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMS 344
Query: 197 KTAGP 201
K P
Sbjct: 345 KEKCP 349
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 95.9 bits (237), Expect = 2e-20
Identities = 71/213 (33%), Positives = 96/213 (45%), Gaps = 35/213 (16%)
Query: 15 PASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAAGVY 74
PA++S T +P +S P R G+ + + G GG G G+
Sbjct: 53 PAAASSLDTD-YPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGSQPPGLN 111
Query: 75 AAGYGLEPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNF----RIYPWM 130
+ +P P L P + AK+ + A+ S+ +I+PWM
Sbjct: 112 SEQQPPQPP-------PPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQIFPWM 164
Query: 131 RSS-----------------------GTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRR 167
+ S G KR R YT Q +ELEKEFH+NRYL R RR
Sbjct: 165 KESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRR 224
Query: 168 IEIAHTLCLTERQIKIWFQNRRMKWKKENKTAG 200
+E+A+ L LTERQIKIWFQNRRMK+KK+ K G
Sbjct: 225 VEMANLLNLTERQIKIWFQNRRMKYKKDQKAKG 257
>gi|24497547 homeobox C9 [Homo sapiens]
Length = 260
Score = 94.4 bits (233), Expect = 7e-20
Identities = 67/210 (31%), Positives = 94/210 (44%), Gaps = 29/210 (13%)
Query: 12 SKYPASS-----SVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYPGGGGMA 66
S +P+ S +VF+T P + + +P P G+ + + G
Sbjct: 48 SDFPSCSFAPKPAVFSTSWAPVPSQSSVVYHPYGPQPHLGADTRYMRTWLEPLSGAVSFP 107
Query: 67 GQSAAGVYAAGYGLEPSSF---NMHCAPFE----------------QNLSGVCPGDSAKA 107
A G + Y L+P ++ C P E P A A
Sbjct: 108 SFPAGGRH---YALKPDAYPGRRADCGPGEGRSYPDYMYGSPGELRDRAPQTLPSPEADA 164
Query: 108 AGAKEQRDSDLAAESNFRIYPWMRSSGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRR 167
+ ++ + + + W+ + T +KR YT+YQTLELEKEF +N YLTR RR
Sbjct: 165 LAGSKHKEEKADLDPSNPVANWIHARSTRKKRC--PYTKYQTLELEKEFLFNMYLTRDRR 222
Query: 168 IEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
E+A L LTERQ+KIWFQNRRMK KK NK
Sbjct: 223 YEVARVLNLTERQVKIWFQNRRMKMKKMNK 252
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 94.0 bits (232), Expect = 9e-20
Identities = 52/108 (48%), Positives = 65/108 (60%), Gaps = 18/108 (16%)
Query: 127 YPWMRSSGT-----------------DRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIE 169
+PWM+S+ + KR R YTR Q LELEKEF +N+Y++R RR+E
Sbjct: 119 FPWMKSTKAHAWKGQWAGGAYAAEPEENKRTRTAYTRAQLLELEKEFLFNKYISRPRRVE 178
Query: 170 IAHTLCLTERQIKIWFQNRRMKWKK-ENKTAGPGTTGQDRAEAEEEEE 216
+A L LTER IKIWFQNRRMKWKK E+K G GT AE E++
Sbjct: 179 LAVMLNLTERHIKIWFQNRRMKWKKEEDKKRGGGTAVGGGGVAEPEQD 226
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 94.0 bits (232), Expect = 9e-20
Identities = 77/214 (35%), Positives = 102/214 (47%), Gaps = 35/214 (16%)
Query: 16 ASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAAGVYA 75
A + F G P+ + +S PGY S A A G GGG A Q AG +
Sbjct: 186 AELAPFPRGPPPDGCALGTSSGVPVPGYFRLSQAYGTAKGYG---SGGGGAQQLGAGPFP 242
Query: 76 A-----GYGLEPS--SFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNF---- 124
A G+ L P+ S + A E+ L P A +G Q D + A S+
Sbjct: 243 AQPPGRGFDLPPALASGSADAARKERALDSPPPPTLACGSGGGSQGDEEAHASSSAAEEL 302
Query: 125 --------RIYPWMRSSGTDR----------KRGRQT---YTRYQTLELEKEFHYNRYLT 163
+ P S G + K GR+ YT++QTLELEKEF +N YLT
Sbjct: 303 SPAPSESSKASPEKDSLGNSKGENAANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLT 362
Query: 164 RRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
R RR+EI+ ++ LT+RQ+KIWFQNRRMK KK N+
Sbjct: 363 RERRLEISRSVHLTDRQVKIWFQNRRMKLKKMNR 396
>gi|84105335 mesenchyme homeobox 2 [Homo sapiens]
Length = 304
Score = 92.4 bits (228), Expect = 3e-19
Identities = 51/127 (40%), Positives = 71/127 (55%), Gaps = 12/127 (9%)
Query: 89 CAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRSSGTDRKRGRQTYTRYQ 148
CAP + + P ++ K +G K + DS + E N++ + ++ R +T+ Q
Sbjct: 144 CAPGDYGRQALSPAEAEKRSGGKRKSDSSDSQEGNYK-----SEVNSKPRKERTAFTKEQ 198
Query: 149 TLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAGPGTTGQDR 208
ELE EF ++ YLTR RR EIA L LTERQ+K+WFQNRRMKWK+ GQ
Sbjct: 199 IRELEAEFAHHNYLTRLRRYEIAVNLDLTERQVKVWFQNRRMKWKRVK-------GGQQG 251
Query: 209 AEAEEEE 215
A A E+E
Sbjct: 252 AAAREKE 258
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 92.0 bits (227), Expect = 3e-19
Identities = 74/214 (34%), Positives = 96/214 (44%), Gaps = 32/214 (14%)
Query: 13 KYPASSSVFATGAFPEQTSCAFASNPQRPGYGAGSGASFAASMQGLYPGGGGMAGQSAA- 71
+YP A + A +P P + A GA G PGG A + A
Sbjct: 36 QYPDYGGYHVAAAAAAAANLDSAQSPG-PSWPAAYGAPLREDWNGYAPGGAAAAANAVAH 94
Query: 72 ----GVYAAGYGLE-PSSFNMHCAPFEQN-------------LSGVCPGDSAKAAGAKEQ 113
G AA G P+ ++ H P L + PG AA A +
Sbjct: 95 GLNGGSPAAAMGYSSPADYHPHHHPHHHPHHPAAAPSCASGLLQTLNPGPPGPAATAAAE 154
Query: 114 RDSDLAAESNFRIYPWMR-----SSGTDRK-----RGRQTYTRYQTLELEKEFHYNRYLT 163
+ S N + WMR S G+ K + R YT +Q LELEKEFHY+RY+T
Sbjct: 155 QLSPGGQRRN--LCEWMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYIT 212
Query: 164 RRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
RR+ E+A TL L+ERQ+KIWFQNRR K +K NK
Sbjct: 213 IRRKAELAATLGLSERQVKIWFQNRRAKERKINK 246
>gi|10140847 homeobox A2 [Homo sapiens]
Length = 376
Score = 91.3 bits (225), Expect = 6e-19
Identities = 50/91 (54%), Positives = 62/91 (68%), Gaps = 6/91 (6%)
Query: 133 SGTDRKRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKW 192
SG +R R YT Q LELEKEFH+N+YL R RR+EIA L LTERQ+K+WFQNRRMK
Sbjct: 139 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH 198
Query: 193 K-----KENKTA-GPGTTGQDRAEAEEEEEE 217
K KEN+ + G + +D + EE+EEE
Sbjct: 199 KRQTQCKENQNSEGKCKSLEDSEKVEEDEEE 229
>gi|24497515 homeobox A3 isoform b [Homo sapiens]
Length = 285
Score = 90.9 bits (224), Expect = 8e-19
Identities = 43/63 (68%), Positives = 50/63 (79%)
Query: 138 KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
KR R YT Q +ELEKEFH+NRYL R RR+E+A+ L LTERQIKIWFQNRRMK+KK+ K
Sbjct: 34 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 93
Query: 198 TAG 200
G
Sbjct: 94 GKG 96
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 90.9 bits (224), Expect = 8e-19
Identities = 43/63 (68%), Positives = 50/63 (79%)
Query: 138 KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
KR R YT Q +ELEKEFH+NRYL R RR+E+A+ L LTERQIKIWFQNRRMK+KK+ K
Sbjct: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251
Query: 198 TAG 200
G
Sbjct: 252 GKG 254
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 90.9 bits (224), Expect = 8e-19
Identities = 43/63 (68%), Positives = 50/63 (79%)
Query: 138 KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
KR R YT Q +ELEKEFH+NRYL R RR+E+A+ L LTERQIKIWFQNRRMK+KK+ K
Sbjct: 192 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQK 251
Query: 198 TAG 200
G
Sbjct: 252 GKG 254
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 90.9 bits (224), Expect = 8e-19
Identities = 74/216 (34%), Positives = 94/216 (43%), Gaps = 42/216 (19%)
Query: 41 PGYGAGSGASFAASMQG-----LYPGG--GGMA-------------GQSAAGVYAAGYGL 80
PG A + A+ AA+ G L+PGG GG G SAA AA G
Sbjct: 119 PGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGLPAQAALYGHPVYGYSAAAAAAALAGQ 178
Query: 81 EPSSFNMHCAPFEQNLSGVCPGDSAKAAGAKEQRDSDLAAESNFRIYPWMRSSGTDR--- 137
P+ + P Q P D K Q D L A + I P M +
Sbjct: 179 HPAL--SYSYPQVQGAHPAHPADPIKLGAGTFQLDQWLRASTAGMILPKMPDFNSQAQSN 236
Query: 138 -----KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKW 192
+R R +T Q LELE +F N+YL+R +R E+A +L LTE Q+KIWFQNRRMKW
Sbjct: 237 LLGKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKW 296
Query: 193 KK------------ENKTAGPGTTGQDRAEAEEEEE 216
K+ E + G G G+ AE EE
Sbjct: 297 KRSKKAKEQAAQEAEKQKGGGGGAGKGGAEEPGAEE 332
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 90.1 bits (222), Expect = 1e-18
Identities = 42/63 (66%), Positives = 50/63 (79%)
Query: 138 KRGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENK 197
KR R YT Q +ELEKEFH+NRYL R RR+E+A+ L L+ERQIKIWFQNRRMK+KK+ K
Sbjct: 189 KRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQK 248
Query: 198 TAG 200
G
Sbjct: 249 AKG 251
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,054,790
Number of Sequences: 37866
Number of extensions: 422728
Number of successful extensions: 2634
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 1975
Number of HSP's gapped (non-prelim): 699
length of query: 217
length of database: 18,247,518
effective HSP length: 98
effective length of query: 119
effective length of database: 14,536,650
effective search space: 1729861350
effective search space used: 1729861350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.