Search of human proteins with 82659115

Search of human proteins with 82659115

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|82659115 distal-less homeobox 6 [Homo sapiens]
         (265 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|82659115 distal-less homeobox 6 [Homo sapiens]                     553   e-158
gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]           265   3e-71
gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]           161   5e-40
gi|4885187 distal-less homeobox 5 [Homo sapiens]                      158   4e-39
gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens]           153   2e-37
gi|4758168 distal-less homeobox 2 [Homo sapiens]                      142   2e-34
gi|4885185 distal-less homeobox 3 [Homo sapiens]                      139   3e-33
gi|5031761 homeobox A1 isoform a [Homo sapiens]                        80   2e-15
gi|118582284 msh homeobox 1 [Homo sapiens]                             80   2e-15
gi|6633798 BarH-like homeobox 2 [Homo sapiens]                         80   2e-15
gi|153218470 BarH-like homeobox 1 [Homo sapiens]                       79   4e-15
gi|27886557 msh homeobox 2 [Homo sapiens]                              78   7e-15
gi|210147470 NK2 transcription factor related, locus 6 [Homo sap...    75   5e-14
gi|147901462 brain specific homeobox [Homo sapiens]                    75   6e-14
gi|24497589 aristaless related homeobox [Homo sapiens]                 74   2e-13
gi|19923391 homeobox D3 [Homo sapiens]                                 73   2e-13
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]                73   3e-13
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap...    73   3e-13
gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]    72   4e-13
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  72   4e-13
gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  72   4e-13
gi|89257348 homeo box HB9 [Homo sapiens]                               72   4e-13
gi|14149611 empty spiracles homeobox 2 [Homo sapiens]                  72   5e-13
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap...    71   1e-12
gi|18959212 GS homeobox 2 [Homo sapiens]                               70   1e-12
gi|84043956 distal-less homeobox 1 isoform 2 [Homo sapiens]            70   2e-12
gi|28912912 NK6 transcription factor related, locus 2 [Homo sapi...    70   2e-12
gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens]    69   3e-12
gi|14149728 BarH-like homeobox 1 [Homo sapiens]                        69   4e-12
gi|226437602 NK1 homeobox 2 [Homo sapiens]                             69   6e-12

>gi|82659115 distal-less homeobox 6 [Homo sapiens]
          Length = 265

 Score =  553 bits (1426), Expect = e-158
 Identities = 265/265 (100%), Positives = 265/265 (100%)

Query: 1   MMTMTTMADGLEGQDSSKSAFMEFGQQQQQQHSPAMAGAHYPLHCLHSAAAAAAAGSHHH 60
           MMTMTTMADGLEGQDSSKSAFMEFGQQQQQQHSPAMAGAHYPLHCLHSAAAAAAAGSHHH
Sbjct: 1   MMTMTTMADGLEGQDSSKSAFMEFGQQQQQQHSPAMAGAHYPLHCLHSAAAAAAAGSHHH 60

Query: 61  HHHQHHHHGSPYASGGGNSYNHRSLAAYPYMSHSQHSPYLQSYHNSSAAAQTRGDDTDQQ 120
           HHHQHHHHGSPYASGGGNSYNHRSLAAYPYMSHSQHSPYLQSYHNSSAAAQTRGDDTDQQ
Sbjct: 61  HHHQHHHHGSPYASGGGNSYNHRSLAAYPYMSHSQHSPYLQSYHNSSAAAQTRGDDTDQQ 120

Query: 121 KTTVIENGEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQ 180
           KTTVIENGEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQ
Sbjct: 121 KTTVIENGEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQ 180

Query: 181 TQVKIWFQNKRSKFKKLLKQGSNPHESDPLQGSAALSPRSPALPPVWDVSASAKGVSMPP 240
           TQVKIWFQNKRSKFKKLLKQGSNPHESDPLQGSAALSPRSPALPPVWDVSASAKGVSMPP
Sbjct: 181 TQVKIWFQNKRSKFKKLLKQGSNPHESDPLQGSAALSPRSPALPPVWDVSASAKGVSMPP 240

Query: 241 NSYMPGYSHWYSSPHQDTMQRPQMM 265
           NSYMPGYSHWYSSPHQDTMQRPQMM
Sbjct: 241 NSYMPGYSHWYSSPHQDTMQRPQMM 265


>gi|64225290 distal-less homeobox 1 isoform 1 [Homo sapiens]
          Length = 255

 Score =  265 bits (677), Expect = 3e-71
 Identities = 148/267 (55%), Positives = 176/267 (65%), Gaps = 15/267 (5%)

Query: 2   MTMTTMADGLEGQDSSKSAFMEFGQQQQQQHSPAMAGAHYPLHCLHSAAAAAAAGSHHHH 61
           MTMTTM + L    S K+ FMEFG   QQ     M+  HY +HCLHSA  +   G++   
Sbjct: 1   MTMTTMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSA 60

Query: 62  HHQHHHHGSPYASGGGNSYNHRSLAAYPYMSHSQHSPYLQSYHNSSAAAQTRGDD--TDQ 119
                  G PY     NS +  S A+ PY+S       +QSY  S++ AQ+R +D   D 
Sbjct: 61  SSFSRPLGYPYV----NSVS--SHASSPYISS------VQSYPGSASLAQSRLEDPGADS 108

Query: 120 QKTTVIENGEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLT 179
           +K+TV+E GE+RFNGKGKKIRKPRTIYSSLQLQALN RFQQTQYLALPERAELAASLGLT
Sbjct: 109 EKSTVVEGGEVRFNGKGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLT 168

Query: 180 QTQVKIWFQNKRSKFKKLLKQGSNPHESDPLQGSAALSPRSPALPPVWDV-SASAKGVSM 238
           QTQVKIWFQNKRSKFKKL+KQG    E   L    ALS  SP +PP W+  S+S KG   
Sbjct: 169 QTQVKIWFQNKRSKFKKLMKQGGAALEGSALANGRALSAGSPPVPPGWNPNSSSGKGSGG 228

Query: 239 PPNSYMPGYSHWYSSPHQDTMQRPQMM 265
              SY+P Y+ WY S HQ+ MQ+PQ+M
Sbjct: 229 NAGSYIPSYTSWYPSAHQEAMQQPQLM 255


>gi|20143962 distal-less homeobox 4 isoform a [Homo sapiens]
          Length = 240

 Score =  161 bits (408), Expect = 5e-40
 Identities = 106/262 (40%), Positives = 139/262 (53%), Gaps = 22/262 (8%)

Query: 4   MTTMADGLEGQDSSKSAFMEFGQQQQQQHSPAMAGAHYPLHCLHSAAAAAAAGSHHHHHH 63
           MT++   L G+D+SK+ F +          P++A A YPL    + AA+           
Sbjct: 1   MTSLPCPLPGRDASKAVFPDLAPV------PSVAAA-YPLGLSPTTAASPNLS------- 46

Query: 64  QHHHHGSPYASGGGNSYNHRSLAAYPYMSHSQHSPYLQSYHNSSAAAQTRGDDTDQQKTT 123
               +  PY       Y   +     Y+S  Q +   Q     +   Q    D+++ + +
Sbjct: 47  ----YSRPYGHLLSYPYTEPANPGDSYLSCQQPAALSQPLCGPAEHPQELEADSEKPRLS 102

Query: 124 VIENGEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQV 183
             E  E R     KK+RKPRTIYSSLQLQ LN RFQ TQYLALPERA+LAA LGLTQTQV
Sbjct: 103 P-EPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQV 161

Query: 184 KIWFQNKRSKFKKLLKQGSNPHESDPLQGSAALSPRSPALPPVWDVSASAKGVSMPPNSY 243
           KIWFQNKRSK+KKLLKQ S   E D    + ++SP SP LP +WD+    K  ++P + Y
Sbjct: 162 KIWFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDL---PKAGTLPTSGY 218

Query: 244 MPGYSHWYSSPHQDTMQRPQMM 265
              +  WY     D +  PQMM
Sbjct: 219 GNSFGAWYQHHSSDVLASPQMM 240


>gi|4885187 distal-less homeobox 5 [Homo sapiens]
          Length = 289

 Score =  158 bits (400), Expect = 4e-39
 Identities = 99/240 (41%), Positives = 130/240 (54%), Gaps = 25/240 (10%)

Query: 37  AGAHYPLHCLHSAAAAAAAGSHHHHHHQHHHHG--SPYASGGGNSYN---------HRSL 85
           A  H+P     +   ++A  S ++       HG  SP ++  G + N         + S 
Sbjct: 25  AAMHHPSQESPTLPESSATDSDYYSPTGGAPHGYCSPTSASYGKALNPYQYQYHGVNGSA 84

Query: 86  AAYPYMSHSQHSPYLQSYHNSSAAAQTRGDDTDQQKTTVIENGEIRFNGKGKKIRKPRTI 145
            +YP  +++ +S Y  SYH    A       T+Q +  V E      NGK KK+RKPRTI
Sbjct: 85  GSYPAKAYADYS-YASSYHQYGGAYNRVPSATNQPEKEVTEPEVRMVNGKPKKVRKPRTI 143

Query: 146 YSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLLKQGSNPH 205
           YSS QL AL  RFQ+TQYLALPERAELAASLGLTQTQVKIWFQNKRSK KK++K G  P 
Sbjct: 144 YSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKIMKNGEMPP 203

Query: 206 ESDPLQGSAALSPRSPALPPVWDVSASAKGVS------------MPPNSYMPGYSHWYSS 253
           E  P   S  ++  SP  P VW+   S++ +S             P +SY+   + WY+S
Sbjct: 204 EHSP-SSSDPMACNSPQSPAVWEPQGSSRSLSHHPHAHPPTSNQSPASSYLENSASWYTS 262


>gi|20143960 distal-less homeobox 4 isoform b [Homo sapiens]
          Length = 168

 Score =  153 bits (386), Expect = 2e-37
 Identities = 81/140 (57%), Positives = 94/140 (67%), Gaps = 3/140 (2%)

Query: 126 ENGEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKI 185
           E  E R     KK+RKPRTIYSSLQLQ LN RFQ TQYLALPERA+LAA LGLTQTQVKI
Sbjct: 32  EPSERRPQAPAKKLRKPRTIYSSLQLQHLNQRFQHTQYLALPERAQLAAQLGLTQTQVKI 91

Query: 186 WFQNKRSKFKKLLKQGSNPHESDPLQGSAALSPRSPALPPVWDVSASAKGVSMPPNSYMP 245
           WFQNKRSK+KKLLKQ S   E D    + ++SP SP LP +WD+    K  ++P + Y  
Sbjct: 92  WFQNKRSKYKKLLKQNSGGQEGDFPGRTFSVSPCSPPLPSLWDL---PKAGTLPTSGYGN 148

Query: 246 GYSHWYSSPHQDTMQRPQMM 265
            +  WY     D +  PQMM
Sbjct: 149 SFGAWYQHHSSDVLASPQMM 168


>gi|4758168 distal-less homeobox 2 [Homo sapiens]
          Length = 328

 Score =  142 bits (359), Expect = 2e-34
 Identities = 90/186 (48%), Positives = 107/186 (57%), Gaps = 11/186 (5%)

Query: 52  AAAAGSHHHHHHQHHHHG-----SPYASGGGNSYNHRSLAAYPYMSHSQHSPYLQSYHNS 106
           + A  S ++ + QH   G     SPYA  G   Y    L   PY + S +     + + S
Sbjct: 59  STATDSSYYTNQQHPAGGGGGGGSPYAHMGSYQYQASGLNNVPYSAKSSYDLGYTAAYTS 118

Query: 107 SAAAQTRGDDTDQQKTTVIENGEIRF-NGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLA 165
            A   T     + +        EIR  NGK KK+RKPRTIYSS QL AL  RFQ+TQYLA
Sbjct: 119 YAPYGTSSSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLA 178

Query: 166 LPERAELAASLGLTQTQVKIWFQNKRSKFKKLLKQGSNPHESDPLQGSAALSP-RSP--A 222
           LPERAELAASLGLTQTQVKIWFQN+RSKFKK+ K G  P E  P  G++A  P  SP  +
Sbjct: 179 LPERAELAASLGLTQTQVKIWFQNRRSKFKKMWKSGEIPSEQHP--GASASPPCASPPVS 236

Query: 223 LPPVWD 228
            P  WD
Sbjct: 237 APASWD 242



 Score = 28.9 bits (63), Expect = 4.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 59  HHHHHQHHHHGSPYASG 75
           HHHHH H   G+P ++G
Sbjct: 309 HHHHHHHGGGGAPVSAG 325


>gi|4885185 distal-less homeobox 3 [Homo sapiens]
          Length = 287

 Score =  139 bits (349), Expect = 3e-33
 Identities = 101/240 (42%), Positives = 123/240 (51%), Gaps = 35/240 (14%)

Query: 42  PLHCLHSAAAAAAAGSHHHHHHQHHHHGSPYASGGGNSYNHRSLAAYPYMSHSQHSPYLQ 101
           P H  +S        + + +HHQ + +G      G  +Y+ +S   Y   S+ Q+     
Sbjct: 46  PQHDYYSGQPYGQTVNPYTYHHQFNLNGL----AGTGAYSPKSEYTYG-ASYRQYG---- 96

Query: 102 SYHNSSAAAQTRGDDTDQQKTTVIENGEIRF-NGKGKKIRKPRTIYSSLQLQALNHRFQQ 160
           +Y      AQ      D          E+R  NGK KK+RKPRTIYSS QL AL  RFQ+
Sbjct: 97  AYREQPLPAQ------DPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQK 150

Query: 161 TQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLLKQGSNPHESDPLQGSAALSPRS 220
            QYLALPERAELAA LGLTQTQVKIWFQN+RSKFKKL K G  P E  P   S +++  S
Sbjct: 151 AQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSP-NNSDSMACNS 209

Query: 221 PALPPVWDVS-----ASAKGVSMPPNSY--MPGY-----SHWY-----SSPHQDTMQRPQ 263
           P  P +WD S     A A+    PP  Y   P Y     + WY     S PH    Q PQ
Sbjct: 210 PPSPALWDTSSHSTPAPARSQLPPPLPYSASPSYLDDPTNSWYHAQNLSGPHLQ-QQPPQ 268


>gi|5031761 homeobox A1 isoform a [Homo sapiens]
          Length = 335

 Score = 80.1 bits (196), Expect = 2e-15
 Identities = 70/201 (34%), Positives = 92/201 (45%), Gaps = 27/201 (13%)

Query: 59  HHHHHQHHHHG---SPYASGGGNSYNHRSLAAYPYMS-----HSQHSPYLQS-YHNSSAA 109
           HHHHHQ +  G   SP          H+SLA   Y +     H+ H    +S    +S+ 
Sbjct: 142 HHHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATYNNSLSPLHASHQEACRSPASETSSP 201

Query: 110 AQTRGDDTDQQKTTVIENGEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPER 169
           AQT   D  + K    + G++   G   +    RT +++ QL  L   F   +YL    R
Sbjct: 202 AQTF--DWMKVKRNPPKTGKVGEYGYLGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARR 259

Query: 170 AELAASLGLTQTQVKIWFQNKRSKFKKLLKQGSNPHESDPLQGSAALSPRSPALPPVWDV 229
            E+AASL L +TQVKIWFQN+R K KK  K+G              L P SPA PP  D 
Sbjct: 260 VEIAASLQLNETQVKIWFQNRRMKQKKREKEG--------------LLPISPATPPGNDE 305

Query: 230 SA--SAKGVSMPPNSYMPGYS 248
            A  S++  S  P    PG S
Sbjct: 306 KAEESSEKSSSSPCVPSPGSS 326



 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 23/48 (47%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 56  GSHHHHHHQHHHHGSP--YASGG--GNSYNHRSLAAYPYMSHSQHSPY 99
           GS HHHHH HHHH  P  Y + G  G SY+H S     Y S +  +PY
Sbjct: 62  GSPHHHHHHHHHHPQPATYQTSGNLGVSYSHSSCGP-SYGSQNFSAPY 108


>gi|118582284 msh homeobox 1 [Homo sapiens]
          Length = 303

 Score = 79.7 bits (195), Expect = 2e-15
 Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 16/105 (15%)

Query: 135 KGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 194
           K K  RKPRT +++ QL AL  +F+Q QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 168 KHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKA 227

Query: 195 KKLLKQGSNPHESDPLQGSAALSPRSPALPPVWDVSASAKGVSMP 239
           K+L +      E + L+ +A      P LPP      +A G+S P
Sbjct: 228 KRLQEA-----ELEKLKMAA-----KPMLPP------AAFGLSFP 256


>gi|6633798 BarH-like homeobox 2 [Homo sapiens]
          Length = 279

 Score = 79.7 bits (195), Expect = 2e-15
 Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 5/98 (5%)

Query: 137 KKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKK 196
           KK R+ RTI++ LQL  L  +FQ+ +YL+ P+R +LA SLGLTQ QVK W+QN+R K+KK
Sbjct: 131 KKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKK 190

Query: 197 LLKQGSNPHESDPLQGSAALSPRSPALPPVWDVSASAK 234
           ++ +G     + P        P+  ++P   ++ A  K
Sbjct: 191 MVLKGGQEAPTKPKG-----RPKKNSIPTSEEIEAEEK 223


>gi|153218470 BarH-like homeobox 1 [Homo sapiens]
          Length = 254

 Score = 79.0 bits (193), Expect = 4e-15
 Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 4/112 (3%)

Query: 135 KGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 194
           K KK R+ RT+++ LQL  L  RF++ +YL+ P+R +LA SLGL+Q QVK W+QN+R K+
Sbjct: 138 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKW 197

Query: 195 KKLLKQGSNPHESDPLQGSAALSPRSPALPPVWDVSASAKGVSMPPNSYMPG 246
           KK++ QG         +G     P+  ++P    ++   +       + +PG
Sbjct: 198 KKIVLQGGGLESPTKPKG----RPKKNSIPTSEQLTEQERAKDAEKPAEVPG 245


>gi|27886557 msh homeobox 2 [Homo sapiens]
          Length = 267

 Score = 78.2 bits (191), Expect = 7e-15
 Identities = 48/110 (43%), Positives = 72/110 (65%), Gaps = 8/110 (7%)

Query: 135 KGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 194
           K K  RKPRT +++ QL AL  +F+Q QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 138 KHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKA 197

Query: 195 KKLLKQGSNPHESDPLQGSA-ALSPRSPALPPVWDVSASAKGVSMPPNSY 243
           K+L +      E + L+ +A  + P S +LP  + +S+  +  S+   SY
Sbjct: 198 KRLQEA-----ELEKLKMAAKPMLPSSFSLP--FPISSPLQAASIYGASY 240


>gi|210147470 NK2 transcription factor related, locus 6 [Homo
           sapiens]
          Length = 219

 Score = 75.5 bits (184), Expect = 5e-14
 Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 6/90 (6%)

Query: 135 KGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 194
           K ++ RKPR ++S  Q+ AL  RF+Q +YL+ PER  LA++L LT TQVKIWFQN+R K 
Sbjct: 46  KARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKC 105

Query: 195 KKLLKQGSNPHESDPLQGSAALSPRSPALP 224
           K+  +  S      P      L+PR  A+P
Sbjct: 106 KRQRQDKSLELAGHP------LTPRRVAVP 129


>gi|147901462 brain specific homeobox [Homo sapiens]
          Length = 233

 Score = 75.1 bits (183), Expect = 6e-14
 Identities = 39/86 (45%), Positives = 54/86 (62%)

Query: 134 GKGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSK 193
           GK  + RK RT++S  QL  L  RF+  +YL+ PER ELA +L L++TQVK WFQN+R K
Sbjct: 105 GKHCRRRKARTVFSDSQLSGLEKRFEIQRYLSTPERVELATALSLSETQVKTWFQNRRMK 164

Query: 194 FKKLLKQGSNPHESDPLQGSAALSPR 219
            KK L++  +  ++     S   SPR
Sbjct: 165 HKKQLRKSQDEPKAPDGPESPEGSPR 190


>gi|24497589 aristaless related homeobox [Homo sapiens]
          Length = 562

 Score = 73.6 bits (179), Expect = 2e-13
 Identities = 44/124 (35%), Positives = 64/124 (51%), Gaps = 14/124 (11%)

Query: 137 KKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKK 196
           +K R+ RT ++S QL+ L   FQ+T Y  +  R ELA  L LT+ +V++WFQN+R+K++K
Sbjct: 326 RKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRK 385

Query: 197 LLKQGSNPHE-----SDPLQGSAALS---------PRSPALPPVWDVSASAKGVSMPPNS 242
             K G+  H        PL  +  LS         P  PAL   W  +A+A   + P   
Sbjct: 386 REKAGAQTHPPGLPFPGPLSATHPLSPYLDASPFPPHHPALDSAWTAAAAAAAAAFPSLP 445

Query: 243 YMPG 246
             PG
Sbjct: 446 PPPG 449


>gi|19923391 homeobox D3 [Homo sapiens]
          Length = 432

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 51/143 (35%), Positives = 67/143 (46%), Gaps = 15/143 (10%)

Query: 136 GKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFK 195
           G   ++ RT Y+S QL  L   F   +YL  P R E+A  L LT+ Q+KIWFQN+R K+K
Sbjct: 191 GPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYK 250

Query: 196 KLLK--------QGSNPHESDPLQGSAALSPRSPALPPV----WDVSASAKGVSMPPNSY 243
           K  K           +P  S PL G+A     S  LPPV    +D  +        PN Y
Sbjct: 251 KDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNMY 310

Query: 244 -MPGYSHWYSS--PHQDTMQRPQ 263
            +  Y+   SS  P Q     P+
Sbjct: 311 GLAAYTAPLSSCLPQQKRYAAPE 333


>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
          Length = 411

 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 49/127 (38%), Positives = 66/127 (51%), Gaps = 8/127 (6%)

Query: 95  QHSPYLQSYHNSSAAAQTRGDDTDQQKTTVIENGEIRFNGKGKKIRKPR---TIYSSLQL 151
           ++SP  Q     +AA    G  T  Q T      + +  G   K  KPR   T ++  QL
Sbjct: 214 ENSPVAQGPPGGAAAPGGAG--TTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQL 271

Query: 152 QALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKLLKQGSNPHESDPLQ 211
            AL ++F+ T+YL++ ER  LA SL LT+TQVKIWFQN+R+K+K   KQ      S P  
Sbjct: 272 VALENKFKATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWK---KQNPGADTSAPTG 328

Query: 212 GSAALSP 218
           G     P
Sbjct: 329 GGGGPGP 335


>gi|148746211 NK2 transcription factor related, locus 3 [Homo
           sapiens]
          Length = 364

 Score = 72.8 bits (177), Expect = 3e-13
 Identities = 45/113 (39%), Positives = 62/113 (54%), Gaps = 14/113 (12%)

Query: 135 KGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 194
           K +  RKPR ++S  Q+  L  RF+Q +YL+ PER  LA+SL LT TQVKIWFQN+R K 
Sbjct: 144 KPRSRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLASSLKLTSTQVKIWFQNRRYKC 203

Query: 195 K-----KLLKQGSNPHESDPLQ---------GSAALSPRSPALPPVWDVSASA 233
           K     K L+ G++     P +         G   ++P + A    + V ASA
Sbjct: 204 KRQRQDKSLELGAHAPPPPPRRVAVPVLVRDGKPCVTPSAQAYGAPYSVGASA 256


>gi|4758090 NK2 transcription factor related, locus 5 [Homo sapiens]
          Length = 324

 Score = 72.4 bits (176), Expect = 4e-13
 Identities = 58/174 (33%), Positives = 81/174 (46%), Gaps = 18/174 (10%)

Query: 99  YLQSYHNSSAAAQTRGDDTDQ---QKTTVIENGEI--RFNGKGKKIRKPRTIYSSLQLQA 153
           Y ++Y +   A   R +  +    QK   +E  E       + ++ RKPR ++S  Q+  
Sbjct: 93  YPRAYSDPDPAKDPRAEKKELCALQKAVELEKTEADNAERPRARRRRKPRVLFSQAQVYE 152

Query: 154 LNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKK------LLKQGSNPHES 207
           L  RF+Q +YL+ PER +LA+ L LT TQVKIWFQN+R K K+      L   G  P   
Sbjct: 153 LERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKCKRQRQDQTLELVGLPPPPP 212

Query: 208 DPLQGSAALSPRSPALPPVWDVS--ASAKGVSMPPNSY-----MPGYSHWYSSP 254
            P +  A         P + D +  A A GV + P  Y      PGY     SP
Sbjct: 213 PPARRIAVPVLVRDGKPCLGDSAPYAPAYGVGLNPYGYNAYPAYPGYGGAACSP 266


>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 814

 Score = 72.4 bits (176), Expect = 4e-13
 Identities = 46/113 (40%), Positives = 60/113 (53%), Gaps = 6/113 (5%)

Query: 109 AAQTRGDDTDQQKTTVIENGEIRFNGKGKKIRKPR---TIYSSLQLQALNHRFQQTQYLA 165
           AA   G  T  Q T      + +  G   K  KPR   T ++  QL AL ++F+ T+YL+
Sbjct: 629 AAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLS 688

Query: 166 LPERAELAASLGLTQTQVKIWFQNKRSKFKKLLKQGSNPHESDPLQGSAALSP 218
           + ER  LA SL LT+TQVKIWFQN+R+K+K   KQ      S P  G     P
Sbjct: 689 VCERLNLALSLSLTETQVKIWFQNRRTKWK---KQNPGADTSAPTGGGGGPGP 738


>gi|239748344 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 653

 Score = 72.4 bits (176), Expect = 4e-13
 Identities = 46/113 (40%), Positives = 60/113 (53%), Gaps = 6/113 (5%)

Query: 109 AAQTRGDDTDQQKTTVIENGEIRFNGKGKKIRKPR---TIYSSLQLQALNHRFQQTQYLA 165
           AA   G  T  Q T      + +  G   K  KPR   T ++  QL AL ++F+ T+YL+
Sbjct: 64  AAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLS 123

Query: 166 LPERAELAASLGLTQTQVKIWFQNKRSKFKKLLKQGSNPHESDPLQGSAALSP 218
           + ER  LA SL LT+TQVKIWFQN+R+K+K   KQ      S P  G     P
Sbjct: 124 VCERLNLALSLSLTETQVKIWFQNRRTKWK---KQNPGADTSAPTGGGGGPGP 173


>gi|89257348 homeo box HB9 [Homo sapiens]
          Length = 401

 Score = 72.4 bits (176), Expect = 4e-13
 Identities = 34/62 (54%), Positives = 47/62 (75%)

Query: 138 KIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKKL 197
           K R+PRT ++S QL  L H+F+  +YL+ P+R E+A SL LT+TQVKIWFQN+R K+K+ 
Sbjct: 240 KCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRS 299

Query: 198 LK 199
            K
Sbjct: 300 KK 301


>gi|14149611 empty spiracles homeobox 2 [Homo sapiens]
          Length = 252

 Score = 72.0 bits (175), Expect = 5e-13
 Identities = 59/184 (32%), Positives = 88/184 (47%), Gaps = 28/184 (15%)

Query: 43  LHCLHSAAAAAAAGSHHHHH-----HQHHHHGSPYASGGGNSYNHRSLAAYPY-MSHSQH 96
           L+  HSAAAAAA    + +          H  +P          H +LAA+P   SHS H
Sbjct: 48  LNGFHSAAAAAAGRGVYSNPDLVFAEAVSHPPNPAVPVHPVPPPH-ALAAHPLPSSHSPH 106

Query: 97  SPYLQSYHNSSA------------AAQTRGDDTDQQKTTVIENGEIRFNGKGKKIRKPRT 144
             +     + S               + +G+DT  +   +        N   +K ++ RT
Sbjct: 107 PLFASQQRDPSTFYPWLIHRYRYLGHRFQGNDTSPESFLL-------HNALARKPKRIRT 159

Query: 145 IYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFK--KLLKQGS 202
            +S  QL  L H F++  Y+   ER +LA SL LT+TQVK+WFQN+R+KFK  KL ++GS
Sbjct: 160 AFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTETQVKVWFQNRRTKFKRQKLEEEGS 219

Query: 203 NPHE 206
           +  +
Sbjct: 220 DSQQ 223



 Score = 28.1 bits (61), Expect = 8.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 86  AAYPYMSHSQHSPYLQSYHNSSAAAQTRG 114
           AA  Y + S  +P+L  +H+++AAA  RG
Sbjct: 34  AALSYANSSPINPFLNGFHSAAAAAAGRG 62


>gi|111120318 NK6 transcription factor related, locus 1 [Homo
           sapiens]
          Length = 367

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 35/69 (50%), Positives = 50/69 (72%), Gaps = 1/69 (1%)

Query: 128 GEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWF 187
           G I  +  GK+ +  R  +S  Q+ AL   F+QT+YLA PERA LA SLG+T++QVK+WF
Sbjct: 226 GSILLDKDGKR-KHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWF 284

Query: 188 QNKRSKFKK 196
           QN+R+K++K
Sbjct: 285 QNRRTKWRK 293


>gi|18959212 GS homeobox 2 [Homo sapiens]
          Length = 304

 Score = 70.5 bits (171), Expect = 1e-12
 Identities = 48/149 (32%), Positives = 64/149 (42%), Gaps = 26/149 (17%)

Query: 58  HHHH---HHQHHHHGSPYASGGGNSYNHRSLAAYPYMSHSQHSPYLQSYHNSSAAAQTR- 113
           HHHH   HH HHH      S    +    + AA   + H QH   + +    + A   R 
Sbjct: 127 HHHHPPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHHAPVCTATTYNVADPRRF 186

Query: 114 ------GDDTDQQKTTVIENGEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLALP 167
                 G D  Q     + NG           ++ RT ++S QL  L   F    YL+  
Sbjct: 187 HCLTMGGSDASQ-----VPNG-----------KRMRTAFTSTQLLELEREFSSNMYLSRL 230

Query: 168 ERAELAASLGLTQTQVKIWFQNKRSKFKK 196
            R E+A  L L++ QVKIWFQN+R K KK
Sbjct: 231 RRIEIATYLNLSEKQVKIWFQNRRVKHKK 259


>gi|84043956 distal-less homeobox 1 isoform 2 [Homo sapiens]
          Length = 129

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 51/140 (36%), Positives = 67/140 (47%), Gaps = 17/140 (12%)

Query: 2   MTMTTMADGLEGQDSSKSAFMEFGQQQQQQHSPAMAGAHYPLHCLHSAAAAAAAGSHHHH 61
           MTMTTM + L    S K+ FMEFG   QQ     M+  HY +HCLHSA  +   G++   
Sbjct: 1   MTMTTMPESLNSPVSGKAVFMEFGPPNQQMSPSPMSHGHYSMHCLHSAGHSQPDGAYSSA 60

Query: 62  HHQHHHHGSPYASGGGNSYNHRSLAAYPYMSHSQHSPYLQSYHNSSAAAQTRGDDTDQ-- 119
                  G PY     NS +  S A+ PY+S       +QSY  S++ AQ+R +D  Q  
Sbjct: 61  SSFSRPLGYPYV----NSVS--SHASSPYISS------VQSYPGSASLAQSRLEDPGQDL 108

Query: 120 ---QKTTVIENGEIRFNGKG 136
              Q   V E  E  + G G
Sbjct: 109 VPKQAIQVQEADEAGWGGSG 128


>gi|28912912 NK6 transcription factor related, locus 2 [Homo
           sapiens]
          Length = 277

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 34/61 (55%), Positives = 47/61 (77%), Gaps = 1/61 (1%)

Query: 136 GKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFK 195
           GKK +  R  +S  Q+ AL   F+QT+YLA PERA LA SLG+T++QVK+WFQN+R+K++
Sbjct: 146 GKK-KHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWR 204

Query: 196 K 196
           K
Sbjct: 205 K 205


>gi|4505401 NK2 transcription factor related, locus 2 [Homo sapiens]
          Length = 273

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 56/158 (35%), Positives = 78/158 (49%), Gaps = 17/158 (10%)

Query: 70  SPYASGGGNSYNHRSLAAYPYMSHSQH--SPYLQSYHNSSAAAQTRGDDT-DQQKTTVIE 126
           +P+     N Y  R LA+   + +S H  +       +SS + +   D++ D  K T   
Sbjct: 63  NPFYDSSDNPYT-RWLASTEGLQYSLHGLAAGAPPQDSSSKSPEPSADESPDNDKETPGG 121

Query: 127 NGEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIW 186
            G+      GKK RK R ++S  Q   L  RF+Q +YL+ PER  LA+ + LT TQVKIW
Sbjct: 122 GGDA-----GKK-RKRRVLFSKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIW 175

Query: 187 FQNKRSKFKKLLKQGSNPHESDPLQGSAALSPRSPALP 224
           FQN R K K+   +     E  PL      SPR  A+P
Sbjct: 176 FQNHRYKMKR--ARAEKGMEVTPLP-----SPRRVAVP 206


>gi|14149728 BarH-like homeobox 1 [Homo sapiens]
          Length = 327

 Score = 68.9 bits (167), Expect = 4e-12
 Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 15/126 (11%)

Query: 86  AAYPYMSHSQHSPYLQSYHNSSAAAQTRGDDTDQQKTTVIENGEIRFNGKG--------- 136
           A  PY S  Q +        ++ AA+   D  D+  +    + E +   +G         
Sbjct: 110 ACAPYSSSGQPAAPEPGGRLAAKAAEDFRDKLDKSGSNASSDSEYKVKEEGDREISSSRD 169

Query: 137 ------KKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNK 190
                 KK RK RT ++  QL  L   F++ +YL++ +R ELAASL LT TQVK W+QN+
Sbjct: 170 SPPVRLKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNR 229

Query: 191 RSKFKK 196
           R+K+K+
Sbjct: 230 RTKWKR 235


>gi|226437602 NK1 homeobox 2 [Homo sapiens]
          Length = 310

 Score = 68.6 bits (166), Expect = 6e-12
 Identities = 33/59 (55%), Positives = 46/59 (77%)

Query: 138 KIRKPRTIYSSLQLQALNHRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKFKK 196
           K R+ RT ++  QL AL ++F+ T+YL++ ER  LA SL LT+TQVKIWFQN+R+K+KK
Sbjct: 162 KPRRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 220


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.124    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,970,177
Number of Sequences: 37866
Number of extensions: 513889
Number of successful extensions: 5223
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 84
Number of HSP's that attempted gapping in prelim test: 2914
Number of HSP's gapped (non-prelim): 1241
length of query: 265
length of database: 18,247,518
effective HSP length: 100
effective length of query: 165
effective length of database: 14,460,918
effective search space: 2386051470
effective search space used: 2386051470
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.