Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 77695912
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]
(392 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens] 822 0.0
gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens] 780 0.0
gi|188219593 TIA1 protein isoform 1 [Homo sapiens] 598 e-171
gi|188219591 TIA1 protein isoform 2 [Homo sapiens] 588 e-168
gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo s... 114 2e-25
gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens] 111 1e-24
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 109 4e-24
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 109 4e-24
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 109 4e-24
gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens] 108 8e-24
gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo s... 102 8e-22
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 100 2e-21
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 100 4e-21
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 100 4e-21
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 100 4e-21
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 100 4e-21
gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens] 99 5e-21
gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens] 97 3e-20
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 96 4e-20
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 96 7e-20
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 94 2e-19
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 93 5e-19
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 93 5e-19
gi|38201714 ELAV-like 1 [Homo sapiens] 92 6e-19
gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Hom... 81 2e-15
gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo... 81 2e-15
gi|209862867 poly-U binding splicing factor 60KDa isoform c [Hom... 78 2e-14
gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo... 78 2e-14
gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo... 78 2e-14
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 74 3e-13
>gi|77695912 TIA-1 related protein isoform 2 [Homo sapiens]
Length = 392
Score = 822 bits (2124), Expect = 0.0
Identities = 392/392 (100%), Positives = 392/392 (100%)
Query: 1 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQ 60
MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQ
Sbjct: 1 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQ 60
Query: 61 HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGD 120
HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGD
Sbjct: 61 HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGD 120
Query: 121 LSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL 180
LSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL
Sbjct: 121 LSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL 180
Query: 181 GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQ 240
GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQ
Sbjct: 181 GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQ 240
Query: 241 TFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTK 300
TFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTK
Sbjct: 241 TFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTK 300
Query: 301 NFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMG 360
NFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMG
Sbjct: 301 NFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMG 360
Query: 361 GFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ 392
GFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ
Sbjct: 361 GFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ 392
>gi|4507499 TIA-1 related protein isoform 1 [Homo sapiens]
Length = 375
Score = 780 bits (2013), Expect = 0.0
Identities = 375/392 (95%), Positives = 375/392 (95%), Gaps = 17/392 (4%)
Query: 1 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQ 60
MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE
Sbjct: 1 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE----------------- 43
Query: 61 HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGD 120
HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGD
Sbjct: 44 HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGD 103
Query: 121 LSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL 180
LSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL
Sbjct: 104 LSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL 163
Query: 181 GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQ 240
GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQ
Sbjct: 164 GGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQ 223
Query: 241 TFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTK 300
TFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTK
Sbjct: 224 TFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTK 283
Query: 301 NFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMG 360
NFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMG
Sbjct: 284 NFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWMG 343
Query: 361 GFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ 392
GFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ
Sbjct: 344 GFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ 375
>gi|188219593 TIA1 protein isoform 1 [Homo sapiens]
Length = 375
Score = 598 bits (1542), Expect = e-171
Identities = 300/395 (75%), Positives = 327/395 (82%), Gaps = 27/395 (6%)
Query: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63
+D P+TLYVGNLSRDVTE LILQLFSQIGPCK+CKMI +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-----------------AG 44
Query: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSP 123
NDPYCFVEF+EHR AAAALAAMNGRKI+GKEVKVNWATTPSSQKKDTSNHFHVFVGDLSP
Sbjct: 45 NDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSP 104
Query: 124 EITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
EITTEDIK+AFAPFG+ISDARVVKDMATGKSKGYGFVSF+NK DAENAI MGGQWLGGR
Sbjct: 105 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 164
Query: 184 QIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFS 243
QIRTNWATRKPPAPKST E+NTKQL +++VVNQSSP NCTVYCGG+ SGLT+QLMRQTFS
Sbjct: 165 QIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFS 224
Query: 244 PFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQ 303
PFGQIMEIRVFP+KGYSFVRF++HESAAHAIVSVNGTTIEGHVVKCYWGKE+ DM Q
Sbjct: 225 PFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQ 284
Query: 304 ---QVDYSQ-WGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGVDQSPSAAWM 359
Q+ Y Q +GQW Q YGN QQ GQYM NGWQVP YG+YGQ WNQQGF QS SA WM
Sbjct: 285 QQNQIGYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGFNQTQS-SAPWM 343
Query: 360 G-GFGAQPPQGQAPPPVIPPPNQ-AGYGMASYQTQ 392
G +G QPPQGQ + PNQ +GY +A Y+TQ
Sbjct: 344 GPNYGVQPPQGQNGSML---PNQPSGYRVAGYETQ 375
>gi|188219591 TIA1 protein isoform 2 [Homo sapiens]
Length = 386
Score = 588 bits (1515), Expect = e-168
Identities = 299/406 (73%), Positives = 327/406 (80%), Gaps = 38/406 (9%)
Query: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63
+D P+TLYVGNLSRDVTE LILQLFSQIGPCK+CKMI +
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDT-----------------AG 44
Query: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSN----------- 112
NDPYCFVEF+EHR AAAALAAMNGRKI+GKEVKVNWATTPSSQKKDTS+
Sbjct: 45 NDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQD 104
Query: 113 HFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 172
HFHVFVGDLSPEITTEDIK+AFAPFG+ISDARVVKDMATGKSKGYGFVSF+NK DAENAI
Sbjct: 105 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAI 164
Query: 173 VHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASG 232
MGGQWLGGRQIRTNWATRKPPAPKST E+NTKQL +++VVNQSSP NCTVYCGG+ SG
Sbjct: 165 QQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSG 224
Query: 233 LTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 292
LT+QLMRQTFSPFGQIMEIRVFP+KGYSFVRF++HESAAHAIVSVNGTTIEGHVVKCYWG
Sbjct: 225 LTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Query: 293 KESPDMTKNFQ---QVDYSQ-WGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGF 348
KE+ DM Q Q+ Y Q +GQW Q YGN QQ GQYM NGWQVP YG+YGQ WNQQGF
Sbjct: 285 KETLDMINPVQQQNQIGYPQPYGQWGQWYGNAQQIGQYMPNGWQVPAYGMYGQAWNQQGF 344
Query: 349 GVDQSPSAAWMG-GFGAQPPQGQAPPPVIPPPNQ-AGYGMASYQTQ 392
QS SA WMG +G QPPQGQ + PNQ +GY +A Y+TQ
Sbjct: 345 NQTQS-SAPWMGPNYGVQPPQGQNGSML---PNQPSGYRVAGYETQ 386
>gi|168229150 poly(A) binding protein, cytoplasmic 4-like [Homo
sapiens]
Length = 370
Score = 114 bits (285), Expect = 2e-25
Identities = 80/283 (28%), Positives = 133/283 (46%), Gaps = 38/283 (13%)
Query: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF 69
+LYVG+L DVTE L+ + FS +GP S ++ +Q R + Y +
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLG---------------YAY 55
Query: 70 VEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTED 129
V F + DA AL MN I GK +++ W+ + ++ S +VF+ +L I +
Sbjct: 56 VNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRR--SGIGNVFIKNLDKSIDNKT 113
Query: 130 IKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNW 189
+ F+ FGKI ++V+ D SKGY FV F N+ A+ AI M G+ L G ++
Sbjct: 114 LYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVG- 170
Query: 190 ATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIM 249
+ N K E + + + VY + D+ ++ FS +G+ +
Sbjct: 171 -----------RFKNRKDREAE--LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 217
Query: 250 EIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
++V + KG+ FV F +HE+A A+ +NG I G ++
Sbjct: 218 SVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLI 260
Score = 94.0 bits (232), Expect = 2e-19
Identities = 71/277 (25%), Positives = 128/277 (46%), Gaps = 30/277 (10%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
+++ NL + + + + FS G S K++++ S+ Y FV
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKG-----------------YAFV 142
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKV----NWATTPSSQKKDTSNHFHVFVGDLSPEIT 126
F A A+ MNG+ + G +V V N + + S +V++ + ++
Sbjct: 143 HFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMD 202
Query: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
E +K F+ +GK +V+ D ++GKSKG+GFVSF + A+ A+ M G+ + G+ I
Sbjct: 203 DERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIF 261
Query: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
A +K ++ + +QL+ E + K +Y + + D+ +R FS FG
Sbjct: 262 VGRAQKKVER-QAELKQMFEQLKRERIRGCQGVK---LYIKNLDDTIDDEKLRNEFSSFG 317
Query: 247 QIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNG 279
I ++V E KG+ + FS+ E A A+ +NG
Sbjct: 318 SISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNG 354
Score = 67.4 bits (163), Expect = 2e-11
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 32/196 (16%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
+Y+ N D+ + + +FS+ G S K++T+ S GF FV
Sbjct: 192 VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSS-----GKSKGFG-----------FV 235
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFH--------------V 116
F H A A+ MNGR I G+ + V A ++ + F +
Sbjct: 236 SFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKL 295
Query: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
++ +L I E +++ F+ FG IS +V+++ G+SKG+G + F + DA A+ M
Sbjct: 296 YIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE--EGQSKGFGLICFSSPEDATKAMTEMN 353
Query: 177 GQWLGGRQIRTNWATR 192
G+ LG + + A R
Sbjct: 354 GRILGSKPLSIALAQR 369
Score = 38.1 bits (87), Expect = 0.014
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 223 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVS 276
++Y G + + +T+ L+ + FS G ++ IR+ ++ GY++V F A A+ +
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 277 VNGTTIEGHVVKCYWGK 293
+N I+G ++ W +
Sbjct: 71 MNFDIIKGKSIRLMWSQ 87
>gi|45238849 poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 111 bits (277), Expect = 1e-24
Identities = 79/280 (28%), Positives = 130/280 (46%), Gaps = 30/280 (10%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
++V NL + + + S G SC ++ ++ N S G Y FV
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDE------NGSKG-----------YGFV 143
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF----HVFVGDLSPEIT 126
F H A A+ MNG + G++V V + ++ + +V++ + ++
Sbjct: 144 HFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMD 203
Query: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
E +K F FG +V+ D +GKSKG+GFVSF DA+ A+ M G+ L G+QI
Sbjct: 204 DERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
A +K + T+ T + +D + + N +Y + G+ D+ +R+ FSPFG
Sbjct: 263 VGRAQKK--VERQTELKRTFEQMKQDRITRYQVVN--LYVKNLDDGIDDERLRKAFSPFG 318
Query: 247 QIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTI 282
I +V E KG+ FV FS+ E A A+ +NG +
Sbjct: 319 TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 107 bits (266), Expect = 2e-23
Identities = 84/281 (29%), Positives = 121/281 (43%), Gaps = 40/281 (14%)
Query: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF 69
+LYVG+L DVTE ++ + FS GP S ++ + S N Y +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSN---------------YAY 56
Query: 70 VEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTE 128
V F +DA AL MN I GK V++ W+ PS +K N +FV +L I +
Sbjct: 57 VNFQHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN---IFVKNLDKSINNK 113
Query: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
+ + FG I VV D SKGYGFV F AE AI M G L GR++
Sbjct: 114 ALYDTVSAFGNILSCNVVCD--ENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVG 171
Query: 189 WATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQI 248
KS +E E + + + VY + D+ ++ F FG
Sbjct: 172 QF-------KSRKER-------EAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 249 MEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEG 284
+ ++V + KG+ FV F HE A A+ +NG + G
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNG 258
Score = 88.6 bits (218), Expect = 9e-18
Identities = 55/189 (29%), Positives = 88/189 (46%), Gaps = 27/189 (14%)
Query: 103 PSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSF 162
PS+ T++ ++VGDL P++T + F+P G I R+ +D+ T S Y +V+F
Sbjct: 3 PSTPSYPTAS---LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNF 59
Query: 163 YNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNC 222
+ DAE+A+ M + G+ +R W+ R P KS N
Sbjct: 60 QHTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN------------------- 100
Query: 223 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVN 278
++ + + ++ + T S FG I+ V + KGY FV F THE+A AI +N
Sbjct: 101 -IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMN 159
Query: 279 GTTIEGHVV 287
G + G V
Sbjct: 160 GMLLNGRKV 168
Score = 86.7 bits (213), Expect = 3e-17
Identities = 71/260 (27%), Positives = 113/260 (43%), Gaps = 38/260 (14%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
+Y+ N D+ + + LF + GP S K++T++ S GF FV
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-----GKSKGFG-----------FV 236
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWAT-----------TPSSQKKDTSNHFHV--- 116
F H DA A+ MNG+++ GK++ V A T K+D + V
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNL 296
Query: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
+V +L I E ++ AF+PFG I+ A+V+ M G+SKG+GFV F + +A A+ M
Sbjct: 297 YVKNLDDGIDDERLRKAFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 177 GQWLGGRQIRTNWATRKPPAPK-STQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
G+ + + + A RK T E + V NQ +P + G + +
Sbjct: 355 GRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPS-----GYFMTAVPQ 409
Query: 236 QLMRQTFSPFGQIMEIRVFP 255
+ P QI +R P
Sbjct: 410 TQNHAAYYPPSQIARLRPSP 429
Score = 50.4 bits (119), Expect = 3e-06
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 214 VNQSSPK--NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFS 265
+N S+P ++Y G + +T+ ++ + FSP G I+ IR+ + Y++V F
Sbjct: 1 MNPSTPSYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQ 60
Query: 266 THESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKN 301
+ A HA+ ++N I+G V+ W + P + K+
Sbjct: 61 HTKDAEHALDTMNFDVIKGKPVRIMWSQRDPSLRKS 96
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 109 bits (273), Expect = 4e-24
Identities = 81/284 (28%), Positives = 126/284 (44%), Gaps = 40/284 (14%)
Query: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF 69
+LYVG+L DVTE ++ + FS GP S ++ + R + Y +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLG---------------YAY 56
Query: 70 VEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTE 128
V F + DA AL MN I GK +++ W+ PS +K N VF+ +L I +
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNK 113
Query: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
+ F+ FG I +VV D SKGY FV F + A+ AI M G L R++
Sbjct: 114 ALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKV--- 168
Query: 189 WATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQI 248
+ R + E K F + VY + D+ +++ FS FG+
Sbjct: 169 FVGRFKSRKEREAELGAKAKEFTN-----------VYIKNFGEEVDDESLKELFSQFGKT 217
Query: 249 MEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
+ ++V + KG+ FV + HE A A+ +NG I G ++
Sbjct: 218 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 105 bits (263), Expect = 5e-23
Identities = 76/280 (27%), Positives = 130/280 (46%), Gaps = 30/280 (10%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
+++ NL + + + FS G SCK++ ++ N S G Y FV
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE------NGSKG-----------YAFV 143
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKD----TSNHFHVFVGDLSPEIT 126
F A A+ MNG + ++V V + ++ + +V++ + E+
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
E +K F+ FGK +V++D GKSKG+GFVS+ DA A+ M G+ + G+ I
Sbjct: 204 DESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
A +K ++ + +QL+ E + S + +Y + + D+ +R+ FSPFG
Sbjct: 263 VGRAQKKVER-QAELKRKFEQLKQERI---SRYQGVNLYIKNLDDTIDDEKLRKEFSPFG 318
Query: 247 QIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTI 282
I +V E KG+ FV FS+ E A A+ +NG +
Sbjct: 319 SITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 80.1 bits (196), Expect = 3e-15
Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 32/197 (16%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
+Y+ N +V + + +LFSQ G S K++ + P+ + S GF FV
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGK----SKGFG-----------FV 236
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF--------------HV 116
+ +H DA A+ MNG++I GK + V A ++ + F ++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNL 296
Query: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
++ +L I E ++ F+PFG I+ A+V+ + G+SKG+GFV F + +A A+ M
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 177 GQWLGGRQIRTNWATRK 193
G+ +G + + A RK
Sbjct: 355 GRIVGSKPLYVALAQRK 371
Score = 49.3 bits (116), Expect = 6e-06
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 217 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESA 270
SS ++Y G + S +T+ ++ + FSP G ++ IRV + GY++V F A
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 271 AHAIVSVNGTTIEGHVVKCYWGKESPDMTKN 301
A+ ++N I+G ++ W + P + K+
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQRDPSLRKS 96
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 109 bits (273), Expect = 4e-24
Identities = 81/284 (28%), Positives = 126/284 (44%), Gaps = 40/284 (14%)
Query: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF 69
+LYVG+L DVTE ++ + FS GP S ++ + R + Y +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLG---------------YAY 56
Query: 70 VEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTE 128
V F + DA AL MN I GK +++ W+ PS +K N VF+ +L I +
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNK 113
Query: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
+ F+ FG I +VV D SKGY FV F + A+ AI M G L R++
Sbjct: 114 ALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKV--- 168
Query: 189 WATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQI 248
+ R + E K F + VY + D+ +++ FS FG+
Sbjct: 169 FVGRFKSRKEREAELGAKAKEFTN-----------VYIKNFGEEVDDESLKELFSQFGKT 217
Query: 249 MEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
+ ++V + KG+ FV + HE A A+ +NG I G ++
Sbjct: 218 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 105 bits (263), Expect = 5e-23
Identities = 76/280 (27%), Positives = 130/280 (46%), Gaps = 30/280 (10%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
+++ NL + + + FS G SCK++ ++ N S G Y FV
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE------NGSKG-----------YAFV 143
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKD----TSNHFHVFVGDLSPEIT 126
F A A+ MNG + ++V V + ++ + +V++ + E+
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
E +K F+ FGK +V++D GKSKG+GFVS+ DA A+ M G+ + G+ I
Sbjct: 204 DESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
A +K ++ + +QL+ E + S + +Y + + D+ +R+ FSPFG
Sbjct: 263 VGRAQKKVER-QAELKRKFEQLKQERI---SRYQGVNLYIKNLDDTIDDEKLRKEFSPFG 318
Query: 247 QIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTI 282
I +V E KG+ FV FS+ E A A+ +NG +
Sbjct: 319 SITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 80.1 bits (196), Expect = 3e-15
Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 32/197 (16%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
+Y+ N +V + + +LFSQ G S K++ + P+ + S GF FV
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGK----SKGFG-----------FV 236
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF--------------HV 116
+ +H DA A+ MNG++I GK + V A ++ + F ++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNL 296
Query: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
++ +L I E ++ F+PFG I+ A+V+ + G+SKG+GFV F + +A A+ M
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 177 GQWLGGRQIRTNWATRK 193
G+ +G + + A RK
Sbjct: 355 GRIVGSKPLYVALAQRK 371
Score = 49.3 bits (116), Expect = 6e-06
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 217 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESA 270
SS ++Y G + S +T+ ++ + FSP G ++ IRV + GY++V F A
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 271 AHAIVSVNGTTIEGHVVKCYWGKESPDMTKN 301
A+ ++N I+G ++ W + P + K+
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQRDPSLRKS 96
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 109 bits (273), Expect = 4e-24
Identities = 81/284 (28%), Positives = 126/284 (44%), Gaps = 40/284 (14%)
Query: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF 69
+LYVG+L DVTE ++ + FS GP S ++ + R + Y +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLG---------------YAY 56
Query: 70 VEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTE 128
V F + DA AL MN I GK +++ W+ PS +K N VF+ +L I +
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNK 113
Query: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
+ F+ FG I +VV D SKGY FV F + A+ AI M G L R++
Sbjct: 114 ALYDTFSAFGNILSCKVVCD--ENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKV--- 168
Query: 189 WATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQI 248
+ R + E K F + VY + D+ +++ FS FG+
Sbjct: 169 FVGRFKSRKEREAELGAKAKEFTN-----------VYIKNFGEEVDDESLKELFSQFGKT 217
Query: 249 MEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
+ ++V + KG+ FV + HE A A+ +NG I G ++
Sbjct: 218 LSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 105 bits (263), Expect = 5e-23
Identities = 76/280 (27%), Positives = 130/280 (46%), Gaps = 30/280 (10%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
+++ NL + + + FS G SCK++ ++ N S G Y FV
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE------NGSKG-----------YAFV 143
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKD----TSNHFHVFVGDLSPEIT 126
F A A+ MNG + ++V V + ++ + +V++ + E+
Sbjct: 144 HFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVD 203
Query: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
E +K F+ FGK +V++D GKSKG+GFVS+ DA A+ M G+ + G+ I
Sbjct: 204 DESLKELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIF 262
Query: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
A +K ++ + +QL+ E + S + +Y + + D+ +R+ FSPFG
Sbjct: 263 VGRAQKKVER-QAELKRKFEQLKQERI---SRYQGVNLYIKNLDDTIDDEKLRKEFSPFG 318
Query: 247 QIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTI 282
I +V E KG+ FV FS+ E A A+ +NG +
Sbjct: 319 SITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 80.1 bits (196), Expect = 3e-15
Identities = 55/197 (27%), Positives = 96/197 (48%), Gaps = 32/197 (16%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
+Y+ N +V + + +LFSQ G S K++ + P+ + S GF FV
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGK----SKGFG-----------FV 236
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF--------------HV 116
+ +H DA A+ MNG++I GK + V A ++ + F ++
Sbjct: 237 SYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNL 296
Query: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
++ +L I E ++ F+PFG I+ A+V+ + G+SKG+GFV F + +A A+ M
Sbjct: 297 YIKNLDDTIDDEKLRKEFSPFGSITSAKVM--LEDGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 177 GQWLGGRQIRTNWATRK 193
G+ +G + + A RK
Sbjct: 355 GRIVGSKPLYVALAQRK 371
Score = 49.3 bits (116), Expect = 6e-06
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 217 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESA 270
SS ++Y G + S +T+ ++ + FSP G ++ IRV + GY++V F A
Sbjct: 6 SSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADA 65
Query: 271 AHAIVSVNGTTIEGHVVKCYWGKESPDMTKN 301
A+ ++N I+G ++ W + P + K+
Sbjct: 66 ERALDTMNFDVIKGKPIRIMWSQRDPSLRKS 96
>gi|46367787 poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
Length = 636
Score = 108 bits (270), Expect = 8e-24
Identities = 82/281 (29%), Positives = 123/281 (43%), Gaps = 40/281 (14%)
Query: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF 69
+LYVG+L DVTE ++ + FS GP S ++ + R + Y +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLG---------------YAY 56
Query: 70 VEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTE 128
V F + DA AL MN I GK V++ W+ PS +K N +F+ +L I +
Sbjct: 57 VNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNK 113
Query: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 188
+ F+ FG I +VV D SKGYGFV F + AE AI M G L R++
Sbjct: 114 ALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 171
Query: 189 WATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQI 248
KS +E E + + + VY + D+ ++ F FG
Sbjct: 172 -------RFKSRKER-------EAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPA 217
Query: 249 MEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEG 284
+ ++V + KG+ FV F HE A A+ +NG + G
Sbjct: 218 LSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNG 258
Score = 107 bits (266), Expect = 2e-23
Identities = 77/280 (27%), Positives = 129/280 (46%), Gaps = 30/280 (10%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
+++ NL + + + FS G SCK++ ++ N S G Y FV
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE------NGSKG-----------YGFV 143
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKD----TSNHFHVFVGDLSPEIT 126
F A A+ MNG + ++V V + ++ + +V++ + ++
Sbjct: 144 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMD 203
Query: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
E +K F FG +V+ D +GKSKG+GFVSF DA+ A+ M G+ L G+QI
Sbjct: 204 DERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIY 262
Query: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFG 246
A +K + T+ + +D + + N +Y + G+ D+ +R+ FSPFG
Sbjct: 263 VGRAQKK--VERQTELKRKFEQMKQDRITRYQGVN--LYVKNLDDGIDDERLRKEFSPFG 318
Query: 247 QIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTI 282
I +V E KG+ FV FS+ E A A+ +NG +
Sbjct: 319 TITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV 358
Score = 89.0 bits (219), Expect = 7e-18
Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 24/176 (13%)
Query: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
++VGDL P++T + F+P G I RV +DM T +S GY +V+F DAE A+ M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
+ G+ +R W+ R P KS N ++ + + +
Sbjct: 73 NFDVIKGKPVRIMWSQRDPSLRKSGVGN--------------------IFIKNLDKSIDN 112
Query: 236 QLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
+ + TFS FG I+ +V + KGY FV F T E+A AI +NG + V
Sbjct: 113 KALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 168
Score = 82.0 bits (201), Expect = 8e-16
Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 32/197 (16%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
+Y+ N D+ + + LF + GP S K++T++ S GF FV
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES-----GKSKGFG-----------FV 236
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHF--------------HV 116
F H DA A+ MNG+++ GK++ V A ++ + F ++
Sbjct: 237 SFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNL 296
Query: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
+V +L I E ++ F+PFG I+ A+V+ M G+SKG+GFV F + +A A+ M
Sbjct: 297 YVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 177 GQWLGGRQIRTNWATRK 193
G+ + + + A RK
Sbjct: 355 GRIVATKPLYVALAQRK 371
Score = 48.5 bits (114), Expect = 1e-05
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 214 VNQSSPKN--CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFS 265
+N S+P ++Y G + +T+ ++ + FSP G I+ IRV + GY++V F
Sbjct: 1 MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 266 THESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKN 301
A A+ ++N I+G V+ W + P + K+
Sbjct: 61 QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKS 96
>gi|185135971 poly(A)-binding protein, cytoplasmic 1-like [Homo
sapiens]
Length = 614
Score = 102 bits (253), Expect = 8e-22
Identities = 96/391 (24%), Positives = 166/391 (42%), Gaps = 55/391 (14%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
+++ NL + + FS G SCK+ ++ SR GF FV
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSR------GFG-----------FV 143
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTS----NHFHVFVGDLSPEIT 126
F H A A+ MNG + ++V V + ++ + +++V +L ++
Sbjct: 144 HFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVD 203
Query: 127 TEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIR 186
+ ++ F+ FGK+ +V++D + G S+ +GFV+F +A+ A+VHM G+ + GR +
Sbjct: 204 EQGLQDLFSQFGKMLSVKVMRDNS-GHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL- 261
Query: 187 TNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPK--NCTVYCGGIASGLTDQLMRQTFSP 244
+A R A K + N + RFE + + +Y + + D +R+ FSP
Sbjct: 262 --YAGR---AQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSP 316
Query: 245 FGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD--- 297
+G I +V E KG+ FV FS+ E A A+ +NG + + + +
Sbjct: 317 YGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKA 376
Query: 298 -MTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPP--YGVYGQPWNQQGFGVDQSP 354
+T + Q + + + G+ QQ Y PP YG G P
Sbjct: 377 ILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAMPQPPAQAAYYG-----CGPVTPTQP 431
Query: 355 SAAWMGGFGAQPPQ----GQAPPPVIP--PP 379
+ W +QPP+ PPV+P PP
Sbjct: 432 APRWT----SQPPRPSCASMVRPPVVPRRPP 458
Score = 97.4 bits (241), Expect = 2e-20
Identities = 72/285 (25%), Positives = 128/285 (44%), Gaps = 42/285 (14%)
Query: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF 69
+LYVG+L DVTE ++ + FS GP S ++ + R + Y +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLG---------------YAY 56
Query: 70 VEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTE 128
+ F + DA AL MN + G+ +++ W+ P +K N +F+ +L I +
Sbjct: 57 INFQQPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGN---IFIKNLEDSIDNK 113
Query: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRT- 187
+ F+ FG I +V D S+G+GFV F A+ AI M G L R++
Sbjct: 114 ALYDTFSTFGNILSCKVACD--EHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVG 171
Query: 188 NWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQ 247
++ +R+ + E + L F + +Y + + +Q ++ FS FG+
Sbjct: 172 HFKSRR----EREAELGARALEFTN-----------IYVKNLPVDVDEQGLQDLFSQFGK 216
Query: 248 IMEIRVFPEKG-----YSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
++ ++V + + FV F HE A A+V +NG + G ++
Sbjct: 217 MLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 45.1 bits (105), Expect = 1e-04
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 223 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVS 276
++Y G + +T+ ++ + FSP G I+ IRV + GY+++ F A A+ +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 277 VNGTTIEGHVVKCYWGKESPDMTKN 301
+N ++G ++ W + P + K+
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLRKS 96
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 100 bits (249), Expect = 2e-21
Identities = 78/330 (23%), Positives = 150/330 (45%), Gaps = 74/330 (22%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
L V L +++T+ + LF IG +SCK++ + + S+G Y FV
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD----KITGQSLG-----------YGFV 85
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 130
+ + +DA A+ +NG ++ K +KV++A S+ +D + ++V L +T +++
Sbjct: 86 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN----LYVSGLPKTMTQKEL 141
Query: 131 KSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQ------------ 178
+ F+ +G+I +R++ D TG S+G GF+ F +++AE AI + GQ
Sbjct: 142 EQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVK 201
Query: 179 WLGGRQIRTNWA---------TRKPPAPKSTQENNTKQLRFEDVVNQS------SPKNC- 222
+ +TN A R+ P P + Q ++ R ++++N + SP
Sbjct: 202 FANNPSQKTNQAILSQLYQSPNRRYPGPLAQQ---AQRFRLDNLLNMAYGVKRFSPMTID 258
Query: 223 ------------------TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KG 258
++ +A + ++ Q F PFG + ++V + KG
Sbjct: 259 GMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKG 318
Query: 259 YSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
+ FV + ++ AA AI S+NG + V++
Sbjct: 319 FGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 348
Score = 77.4 bits (189), Expect = 2e-14
Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 28/188 (14%)
Query: 98 NWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGY 157
N ++P + ++ V L +T E++KS F G+I ++V+D TG+S GY
Sbjct: 23 NNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGY 82
Query: 158 GFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQS 217
GFV++ + DAE AI + G L + I+ ++A +P + +
Sbjct: 83 GFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYA--RP--------------------SSA 120
Query: 218 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAA 271
S ++ +Y G+ +T + + Q FS +G+I+ R+ + +G F+RF A
Sbjct: 121 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE 180
Query: 272 HAIVSVNG 279
AI +NG
Sbjct: 181 EAIKGLNG 188
Score = 58.2 bits (139), Expect = 1e-08
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
+FV +L+P+ + F PFG +++ +V++D T K KG+GFV+ N +A AI +
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 176 GGQWLGGRQIRTNWATRK 193
G LG R ++ ++ T K
Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
Score = 34.7 bits (78), Expect = 0.15
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 18/99 (18%)
Query: 6 GQPRT---LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
G P T ++V NL+ D E ++ Q+F G + K+I + N GF
Sbjct: 270 GHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRD----FNTNKCKGFG----- 320
Query: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 101
FV + +AA A+A++NG ++ + ++V++ T
Sbjct: 321 ------FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 353
Score = 30.8 bits (68), Expect = 2.2
Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 229 IASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTI 282
+ +T + ++ F G+I ++ +K GY FV + + A AI ++NG +
Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105
Query: 283 EGHVVKCYWGKES 295
+ +K + + S
Sbjct: 106 QTKTIKVSYARPS 118
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 99.8 bits (247), Expect = 4e-21
Identities = 76/333 (22%), Positives = 147/333 (44%), Gaps = 68/333 (20%)
Query: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSN 64
D L V L +++T+ LF IG +SCK++ + + S+G
Sbjct: 45 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD----KITGQSLG--------- 91
Query: 65 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Y FV + + +DA A+ +NG ++ K +KV++A S+ +D +++V L
Sbjct: 92 --YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKT 145
Query: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
+T ++++ F+ +G+I +R++ D TG S+G GF+ F +++AE AI + GQ G
Sbjct: 146 MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 205
Query: 185 IRTNWATRKPPAPKSTQ------------------ENNTKQLRFEDVVNQS------SP- 219
P+ KS+Q + ++ R ++++N + SP
Sbjct: 206 EPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPI 265
Query: 220 ------------------KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----- 256
++ ++ + ++ Q F PFG + ++V +
Sbjct: 266 TIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNK 325
Query: 257 -KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
KG+ FV + ++ AA AI S+NG + V++
Sbjct: 326 CKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 358
Score = 59.3 bits (142), Expect = 6e-09
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 110 TSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE 169
T + +FV +LSP+ + F PFG +++ +V++D T K KG+GFV+ N +A
Sbjct: 282 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 341
Query: 170 NAIVHMGGQWLGGRQIRTNWATRK 193
AI + G LG R ++ ++ T K
Sbjct: 342 MAIASLNGYRLGDRVLQVSFKTNK 365
Score = 35.0 bits (79), Expect = 0.12
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
++V NLS D E ++ QLF G + K+I + N GF FV
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRD----FNTNKCKGFG-----------FV 332
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWAT 101
+ +AA A+A++NG ++ + ++V++ T
Sbjct: 333 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 363
Score = 31.2 bits (69), Expect = 1.7
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 229 IASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTI 282
+ +T + R F G+I ++ +K GY FV + + A AI ++NG +
Sbjct: 56 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 115
Query: 283 EGHVVKCYWGKES 295
+ +K + + S
Sbjct: 116 QTKTIKVSYARPS 128
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 99.8 bits (247), Expect = 4e-21
Identities = 76/333 (22%), Positives = 147/333 (44%), Gaps = 68/333 (20%)
Query: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSN 64
D L V L +++T+ LF IG +SCK++ + + S+G
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD----KITGQSLG--------- 88
Query: 65 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Y FV + + +DA A+ +NG ++ K +KV++A S+ +D +++V L
Sbjct: 89 --YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKT 142
Query: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
+T ++++ F+ +G+I +R++ D TG S+G GF+ F +++AE AI + GQ G
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 202
Query: 185 IRTNWATRKPPAPKSTQ------------------ENNTKQLRFEDVVNQS------SP- 219
P+ KS+Q + ++ R ++++N + SP
Sbjct: 203 EPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPI 262
Query: 220 ------------------KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----- 256
++ ++ + ++ Q F PFG + ++V +
Sbjct: 263 TIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNK 322
Query: 257 -KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
KG+ FV + ++ AA AI S+NG + V++
Sbjct: 323 CKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 355
Score = 59.3 bits (142), Expect = 6e-09
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 110 TSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE 169
T + +FV +LSP+ + F PFG +++ +V++D T K KG+GFV+ N +A
Sbjct: 279 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 338
Query: 170 NAIVHMGGQWLGGRQIRTNWATRK 193
AI + G LG R ++ ++ T K
Sbjct: 339 MAIASLNGYRLGDRVLQVSFKTNK 362
Score = 35.0 bits (79), Expect = 0.12
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
++V NLS D E ++ QLF G + K+I + N GF FV
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRD----FNTNKCKGFG-----------FV 329
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWAT 101
+ +AA A+A++NG ++ + ++V++ T
Sbjct: 330 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 360
Score = 31.2 bits (69), Expect = 1.7
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 229 IASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTI 282
+ +T + R F G+I ++ +K GY FV + + A AI ++NG +
Sbjct: 53 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 112
Query: 283 EGHVVKCYWGKES 295
+ +K + + S
Sbjct: 113 QTKTIKVSYARPS 125
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 99.8 bits (247), Expect = 4e-21
Identities = 76/333 (22%), Positives = 147/333 (44%), Gaps = 68/333 (20%)
Query: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSN 64
D L V L +++T+ LF IG +SCK++ + + S+G
Sbjct: 59 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD----KITGQSLG--------- 105
Query: 65 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Y FV + + +DA A+ +NG ++ K +KV++A S+ +D +++V L
Sbjct: 106 --YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKT 159
Query: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
+T ++++ F+ +G+I +R++ D TG S+G GF+ F +++AE AI + GQ G
Sbjct: 160 MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 219
Query: 185 IRTNWATRKPPAPKSTQ------------------ENNTKQLRFEDVVNQS------SP- 219
P+ KS+Q + ++ R ++++N + SP
Sbjct: 220 EPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPI 279
Query: 220 ------------------KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----- 256
++ ++ + ++ Q F PFG + ++V +
Sbjct: 280 TIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNK 339
Query: 257 -KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
KG+ FV + ++ AA AI S+NG + V++
Sbjct: 340 CKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 372
Score = 59.3 bits (142), Expect = 6e-09
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 110 TSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE 169
T + +FV +LSP+ + F PFG +++ +V++D T K KG+GFV+ N +A
Sbjct: 296 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 355
Query: 170 NAIVHMGGQWLGGRQIRTNWATRK 193
AI + G LG R ++ ++ T K
Sbjct: 356 MAIASLNGYRLGDRVLQVSFKTNK 379
Score = 35.0 bits (79), Expect = 0.12
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
++V NLS D E ++ QLF G + K+I + N GF FV
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRD----FNTNKCKGFG-----------FV 346
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWAT 101
+ +AA A+A++NG ++ + ++V++ T
Sbjct: 347 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 377
Score = 31.2 bits (69), Expect = 1.7
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 229 IASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTI 282
+ +T + R F G+I ++ +K GY FV + + A AI ++NG +
Sbjct: 70 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 129
Query: 283 EGHVVKCYWGKES 295
+ +K + + S
Sbjct: 130 QTKTIKVSYARPS 142
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 99.8 bits (247), Expect = 4e-21
Identities = 76/333 (22%), Positives = 147/333 (44%), Gaps = 68/333 (20%)
Query: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSN 64
D L V L +++T+ LF IG +SCK++ + + S+G
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD----KITGQSLG--------- 88
Query: 65 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Y FV + + +DA A+ +NG ++ K +KV++A S+ +D +++V L
Sbjct: 89 --YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKT 142
Query: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
+T ++++ F+ +G+I +R++ D TG S+G GF+ F +++AE AI + GQ G
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 202
Query: 185 IRTNWATRKPPAPKSTQ------------------ENNTKQLRFEDVVNQS------SP- 219
P+ KS+Q + ++ R ++++N + SP
Sbjct: 203 EPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPI 262
Query: 220 ------------------KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----- 256
++ ++ + ++ Q F PFG + ++V +
Sbjct: 263 TIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNK 322
Query: 257 -KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
KG+ FV + ++ AA AI S+NG + V++
Sbjct: 323 CKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 355
Score = 59.3 bits (142), Expect = 6e-09
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 110 TSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE 169
T + +FV +LSP+ + F PFG +++ +V++D T K KG+GFV+ N +A
Sbjct: 279 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 338
Query: 170 NAIVHMGGQWLGGRQIRTNWATRK 193
AI + G LG R ++ ++ T K
Sbjct: 339 MAIASLNGYRLGDRVLQVSFKTNK 362
Score = 35.0 bits (79), Expect = 0.12
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
++V NLS D E ++ QLF G + K+I + N GF FV
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRD----FNTNKCKGFG-----------FV 329
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWAT 101
+ +AA A+A++NG ++ + ++V++ T
Sbjct: 330 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 360
Score = 31.2 bits (69), Expect = 1.7
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 229 IASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTI 282
+ +T + R F G+I ++ +K GY FV + + A AI ++NG +
Sbjct: 53 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 112
Query: 283 EGHVVKCYWGKES 295
+ +K + + S
Sbjct: 113 QTKTIKVSYARPS 125
>gi|18201888 poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
Length = 382
Score = 99.4 bits (246), Expect = 5e-21
Identities = 72/281 (25%), Positives = 130/281 (46%), Gaps = 31/281 (11%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
+++ NL + + + LFS G SCK++ + N S G Y +V
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD------NGSKG-----------YAYV 150
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK-----KDTSNHFHVFVGDLSPEI 125
F A A+ MNG ++ ++V V P + +D + +VFV ++ +I
Sbjct: 151 HFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDI 210
Query: 126 TTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
E +K F +G +V++D A+GKSKG+GFV + A+ A++ + G+ + G+ +
Sbjct: 211 DDEKLKELFCEYGPTESVKVIRD-ASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Query: 186 RTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPF 245
A +K + ++LR ++ +S P +Y + + D+ +++ FS F
Sbjct: 270 YVGRAQKKIER-LAELRRRFERLRLKE---KSRPPGVPIYIKNLDETINDEKLKEEFSSF 325
Query: 246 GQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTI 282
G I +V E KG+ V FS+ E A A+ +NG +
Sbjct: 326 GSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIV 366
Score = 97.4 bits (241), Expect = 2e-20
Identities = 80/282 (28%), Positives = 128/282 (45%), Gaps = 37/282 (13%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
LYVG+L DVTE ++ + F GP + + I P +R S +G Y +V
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTR-ICRDPVTR---SPLG-----------YGYV 64
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 130
F DA AL MN I GK ++ W+ +K S ++F+ +L I +
Sbjct: 65 NFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRK--SGVGNIFIKNLDKSIDNRAL 122
Query: 131 KSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190
F+ FG I +VV D SKGY +V F + A AI HM G L RQ+
Sbjct: 123 FYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG-- 178
Query: 191 TRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIME 250
K P ++ + + F +V + I + D+ +++ F +G
Sbjct: 179 RFKFPEERAAEVRTRDRATFTNV-----------FVKNIGDDIDDEKLKELFCEYGPTES 227
Query: 251 IRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVV 287
++V + KG+ FVR+ THE+A A++ ++G +I+G V+
Sbjct: 228 VKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVL 269
Score = 63.9 bits (154), Expect = 2e-10
Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 32/189 (16%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
++V N+ D+ + + +LF + GP +S K+I + S GF FV
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDAS-----GKSKGFG-----------FV 244
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFH--------------V 116
+ H A A+ ++G+ I GK + V A + + F +
Sbjct: 245 RYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPI 304
Query: 117 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 176
++ +L I E +K F+ FG IS A+V+ M G+ KG+G V F + +A A+ M
Sbjct: 305 YIKNLDETINDEKLKEEFSSFGSISRAKVM--MEVGQGKGFGVVCFSSFEEATKAVDEMN 362
Query: 177 GQWLGGRQI 185
G+ +G + +
Sbjct: 363 GRIVGSKPL 371
Score = 30.8 bits (68), Expect = 2.2
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSV 277
+Y G + +T+ ++ + F P G + R+ + GY +V F A A+ ++
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 278 NGTTIEGHVVKCYWGKESPDMTKN 301
N I G + W + + K+
Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKS 103
>gi|5032069 splicing factor 3b, subunit 4 [Homo sapiens]
Length = 424
Score = 96.7 bits (239), Expect = 3e-20
Identities = 65/193 (33%), Positives = 98/193 (50%), Gaps = 19/193 (9%)
Query: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQH 61
+ + Q T+YVG L V+E L+ +LF Q GP + T P R G
Sbjct: 6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVN----THMPKDRVTGQHQG------ 55
Query: 62 TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDL 121
Y FVEF DA A+ MN K+ GK ++VN A S+ K+ ++F+G+L
Sbjct: 56 -----YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKA---SAHNKNLDVGANIFIGNL 107
Query: 122 SPEITTEDIKSAFAPFGKISDA-RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL 180
PEI + + F+ FG I ++++D TG SKGY F++F + ++ AI M GQ+L
Sbjct: 108 DPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 167
Query: 181 GGRQIRTNWATRK 193
R I ++A +K
Sbjct: 168 CNRPITVSYAFKK 180
Score = 67.4 bits (163), Expect = 2e-11
Identities = 50/187 (26%), Positives = 89/187 (47%), Gaps = 31/187 (16%)
Query: 100 ATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGF 159
A P S++ + V+VG L +++ + F G + + + KD TG+ +GYGF
Sbjct: 2 AAGPISERNQDAT---VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGF 58
Query: 160 VSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSP 219
V F ++ DA+ AI M L G+ IR N A+ N++
Sbjct: 59 VEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAH---------------------NKNLD 97
Query: 220 KNCTVYCGGIASGLTDQLMRQTFSPFGQIME---IRVFPE----KGYSFVRFSTHESAAH 272
++ G + + ++L+ TFS FG I++ I P+ KGY+F+ F++ +++
Sbjct: 98 VGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDA 157
Query: 273 AIVSVNG 279
AI ++NG
Sbjct: 158 AIEAMNG 164
Score = 40.0 bits (92), Expect = 0.004
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 19/105 (18%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
+++GNL ++ E L+ FS G I PD+ +S G Y F+
Sbjct: 102 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDT---GNSKG-----------YAFI 147
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFH 115
F + AA+ AMNG+ + + + V++A KKD+ H
Sbjct: 148 NFASFDASDAAIEAMNGQYLCNRPITVSYAF-----KKDSKGERH 187
Score = 28.9 bits (63), Expect = 8.4
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 329 NGWQVPPYGVYGQPWN---QQGFGVDQSPSAAWMGGFGAQPPQGQA-PPPVIPPPNQAG 383
+G Q PP G P G P + MG G PP G PPP++PP G
Sbjct: 329 SGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGHPGPMPPHGMRGPPPLMPPHGYTG 387
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 96.3 bits (238), Expect = 4e-20
Identities = 76/347 (21%), Positives = 147/347 (42%), Gaps = 82/347 (23%)
Query: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSN 64
D L V L +++T+ LF IG +SCK++ + + S+G
Sbjct: 42 DDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRD----KITGQSLG--------- 88
Query: 65 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Y FV + + +DA A+ +NG ++ K +KV++A S+ +D +++V L
Sbjct: 89 --YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA----NLYVSGLPKT 142
Query: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
+T ++++ F+ +G+I +R++ D TG S+G GF+ F +++AE AI + GQ G
Sbjct: 143 MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAT 202
Query: 185 IRTNWATRKPPAPKSTQ------------------ENNTKQLRFEDVVNQS--------- 217
P+ KS+Q + ++ R ++++N +
Sbjct: 203 EPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRLMSG 262
Query: 218 --SPKNC----------------------------TVYCGGIASGLTDQLMRQTFSPFGQ 247
P C ++ ++ + ++ Q F PFG
Sbjct: 263 PVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGA 322
Query: 248 IMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
+ ++V + KG+ FV + ++ AA AI S+NG + V++
Sbjct: 323 VNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQ 369
Score = 59.3 bits (142), Expect = 6e-09
Identities = 29/84 (34%), Positives = 48/84 (57%)
Query: 110 TSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAE 169
T + +FV +LSP+ + F PFG +++ +V++D T K KG+GFV+ N +A
Sbjct: 293 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 352
Query: 170 NAIVHMGGQWLGGRQIRTNWATRK 193
AI + G LG R ++ ++ T K
Sbjct: 353 MAIASLNGYRLGDRVLQVSFKTNK 376
Score = 35.0 bits (79), Expect = 0.12
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 15/91 (16%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
++V NLS D E ++ QLF G + K+I + N GF FV
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRD----FNTNKCKGFG-----------FV 343
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWAT 101
+ +AA A+A++NG ++ + ++V++ T
Sbjct: 344 TMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 374
Score = 31.2 bits (69), Expect = 1.7
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 229 IASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTI 282
+ +T + R F G+I ++ +K GY FV + + A AI ++NG +
Sbjct: 53 LPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 112
Query: 283 EGHVVKCYWGKES 295
+ +K + + S
Sbjct: 113 QTKTIKVSYARPS 125
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 95.5 bits (236), Expect = 7e-20
Identities = 79/334 (23%), Positives = 146/334 (43%), Gaps = 69/334 (20%)
Query: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSN 64
D L V L +++T+ LF IG +SCK++ + + S+G
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRD----KITGQSLG--------- 81
Query: 65 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Y FV + + DA A+ +NG K+ K +KV++A S+ +D + ++V L
Sbjct: 82 --YGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDAN----LYVSGLPKT 135
Query: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
++ ++++ F+ +G+I +R++ D TG S+G GF+ F +++AE AI + GQ G
Sbjct: 136 MSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAA 195
Query: 185 IRTNWATRKPPAPKSTQ------------------ENNTKQLRFEDVVNQS------SPK 220
P+ K+ Q + T++ R ++++N + SP
Sbjct: 196 EPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKRFSPI 255
Query: 221 NCTVYCGGIASGLT--------------------DQLMRQTFSPFGQIMEIRVFPE---- 256
G GL+ + ++ Q F PFG + ++V +
Sbjct: 256 AIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTN 315
Query: 257 --KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
KG+ FV + ++ AA AI S+NG + V++
Sbjct: 316 KCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 349
Score = 60.5 bits (145), Expect = 3e-09
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
+FV +LSPE + F PFG +++ +V++D T K KG+GFV+ N +A AI +
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 176 GGQWLGGRQIRTNWATRK 193
G LG R ++ ++ T K
Sbjct: 339 NGYRLGERVLQVSFKTSK 356
Score = 33.5 bits (75), Expect = 0.34
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
++V NLS + E ++ QLF G + K+I + N GF FV
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRD----FTTNKCKGFG-----------FV 323
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATT 102
+ +AA A+A++NG ++ + ++V++ T+
Sbjct: 324 TMTNYDEAAMAIASLNGYRLGERVLQVSFKTS 355
Score = 30.0 bits (66), Expect = 3.8
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 229 IASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTI 282
+ +T + F G I ++ +K GY FV +S A AI ++NG +
Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105
Query: 283 EGHVVKCYWGKES 295
+ +K + + S
Sbjct: 106 QTKTIKVSYARPS 118
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 94.4 bits (233), Expect = 2e-19
Identities = 81/341 (23%), Positives = 148/341 (43%), Gaps = 76/341 (22%)
Query: 5 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSN 64
D L V L +++T+ LF IG +SCK++ + + S+G
Sbjct: 35 DDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRD----KITGQSLG--------- 81
Query: 65 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPE 124
Y FV + + DA A+ +NG K+ K +KV++A S+ +D + ++V L
Sbjct: 82 --YGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDAN----LYVSGLPKT 135
Query: 125 ITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQ 184
++ ++++ F+ +G+I +R++ D TG S+G GF+ F +++AE AI + GQ G
Sbjct: 136 MSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAA 195
Query: 185 IRTNWATRKPPAPKSTQ------------------ENNTKQLRFEDVVNQS----SPKNC 222
P+ K+ Q + T++ R ++++N + SP +
Sbjct: 196 EPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNLLNMAYGVKSPLSL 255
Query: 223 TVYCGGIA----SGLT-------------------------DQLMRQTFSPFGQIMEIRV 253
IA SGL + ++ Q F PFG + ++V
Sbjct: 256 IARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKV 315
Query: 254 FPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
+ KG+ FV + ++ AA AI S+NG + V++
Sbjct: 316 IRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQ 356
Score = 60.5 bits (145), Expect = 3e-09
Identities = 29/78 (37%), Positives = 46/78 (58%)
Query: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
+FV +LSPE + F PFG +++ +V++D T K KG+GFV+ N +A AI +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 176 GGQWLGGRQIRTNWATRK 193
G LG R ++ ++ T K
Sbjct: 346 NGYRLGERVLQVSFKTSK 363
Score = 33.5 bits (75), Expect = 0.34
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
++V NLS + E ++ QLF G + K+I + N GF FV
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRD----FTTNKCKGFG-----------FV 330
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATT 102
+ +AA A+A++NG ++ + ++V++ T+
Sbjct: 331 TMTNYDEAAMAIASLNGYRLGERVLQVSFKTS 362
Score = 30.0 bits (66), Expect = 3.8
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 229 IASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVSVNGTTI 282
+ +T + F G I ++ +K GY FV +S A AI ++NG +
Sbjct: 46 LPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKL 105
Query: 283 EGHVVKCYWGKES 295
+ +K + + S
Sbjct: 106 QTKTIKVSYARPS 118
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 92.8 bits (229), Expect = 5e-19
Identities = 75/271 (27%), Positives = 123/271 (45%), Gaps = 28/271 (10%)
Query: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
+FVG L T E ++S F+ +G++ D ++KD T +S+G+GFV F + + ++
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCVGTVLAS 70
Query: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLR-FEDVVNQSSPKNCTVYCGGIASGLT 234
L GR I KP P+ Q T+ ++ + K+ ++ GGI
Sbjct: 71 RPHTLDGRNI-----DPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCG 125
Query: 235 DQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
+ +R+ F FG + E+ + + +G+ F+ F +S A V+++ I G V+
Sbjct: 126 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVE 184
Query: 289 CYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGF 348
+ ++ Q SQWG S+V N ANGW P + Q + QG
Sbjct: 185 VKRAEPRDSKSQAPGQPGASQWG--SRVVPN-------AANGWAGQPPPTWQQGYGPQGM 235
Query: 349 GVDQSPSAAWMGGFGAQPPQGQAPPPVIPPP 379
V P+ +GG+G P APPP PPP
Sbjct: 236 WV---PAGQAIGGYGPPPAGRGAPPP--PPP 261
Score = 49.3 bits (116), Expect = 6e-06
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
L+VG L T+ + FSQ G C ++ + + N S GF ++ DP C
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKD----KTTNQSRGFGFVKF--KDPNCVG 65
Query: 71 EFYEHRDAAAALAAMNGRKILGKEV------------KVNWATTPSSQKKDTSNHFHVFV 118
R ++GR I K K W P S D S +FV
Sbjct: 66 TVLASRPHT-----LDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRS---DNSKSNKIFV 117
Query: 119 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 172
G + +++ F FG +++ ++ D + +G+GF++F ++ + A+
Sbjct: 118 GGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 92.8 bits (229), Expect = 5e-19
Identities = 75/271 (27%), Positives = 123/271 (45%), Gaps = 28/271 (10%)
Query: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
+FVG L T E ++S F+ +G++ D ++KD T +S+G+GFV F + + ++
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCVGTVLAS 70
Query: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLR-FEDVVNQSSPKNCTVYCGGIASGLT 234
L GR I KP P+ Q T+ ++ + K+ ++ GGI
Sbjct: 71 RPHTLDGRNI-----DPKPCTPRGMQPERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCG 125
Query: 235 DQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
+ +R+ F FG + E+ + + +G+ F+ F +S A V+++ I G V+
Sbjct: 126 ETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQA-VNMHFHDIMGKKVE 184
Query: 289 CYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGF 348
+ ++ Q SQWG S+V N ANGW P + Q + QG
Sbjct: 185 VKRAEPRDSKSQAPGQPGASQWG--SRVVPN-------AANGWAGQPPPTWQQGYGPQGM 235
Query: 349 GVDQSPSAAWMGGFGAQPPQGQAPPPVIPPP 379
V P+ +GG+G P APPP PPP
Sbjct: 236 WV---PAGQAIGGYGPPPAGRGAPPP--PPP 261
Score = 49.3 bits (116), Expect = 6e-06
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 26/174 (14%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
L+VG L T+ + FSQ G C ++ + + N S GF ++ DP C
Sbjct: 12 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKD----KTTNQSRGFGFVKF--KDPNCVG 65
Query: 71 EFYEHRDAAAALAAMNGRKILGKEV------------KVNWATTPSSQKKDTSNHFHVFV 118
R ++GR I K K W P S D S +FV
Sbjct: 66 TVLASRPHT-----LDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRS---DNSKSNKIFV 117
Query: 119 GDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 172
G + +++ F FG +++ ++ D + +G+GF++F ++ + A+
Sbjct: 118 GGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 171
>gi|38201714 ELAV-like 1 [Homo sapiens]
Length = 326
Score = 92.4 bits (228), Expect = 6e-19
Identities = 76/305 (24%), Positives = 134/305 (43%), Gaps = 55/305 (18%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
L V L +++T+ + LFS IG +S K+I ++ S+G Y FV
Sbjct: 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKV----AGHSLG-----------YGFV 66
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 130
+ +DA A+ +NG ++ K +KV++A S KD ++++ L +T +D+
Sbjct: 67 NYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA----NLYISGLPRTMTQKDV 122
Query: 131 KSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGG--RQIRTN 188
+ F+ FG+I ++RV+ D TG S+G F+ F + +AE AI G G I
Sbjct: 123 EDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPITVK 182
Query: 189 WATR--------------KPPAPK--STQENNTKQLRFEDV------------VNQSSPK 220
+A PA + + ++ RF + V ++
Sbjct: 183 FAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNASS 242
Query: 221 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAI 274
++ + + ++ Q F PFG + ++V + KG+ FV + +E AA AI
Sbjct: 243 GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAI 302
Query: 275 VSVNG 279
S+NG
Sbjct: 303 ASLNG 307
Score = 75.1 bits (183), Expect = 1e-13
Identities = 67/258 (25%), Positives = 115/258 (44%), Gaps = 48/258 (18%)
Query: 115 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVH 174
++ V L +T ++++S F+ G++ A++++D G S GYGFV++ DAE AI
Sbjct: 21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINT 80
Query: 175 MGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLT 234
+ G L + I+ ++A P S +V+ K+ +Y G+ +T
Sbjct: 81 LNGLRLQSKTIKVSYA-----RPSS------------EVI-----KDANLYISGLPRTMT 118
Query: 235 DQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGH--- 285
+ + FS FG+I+ RV + +G +F+RF A AI S NG G
Sbjct: 119 QKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEP 178
Query: 286 -VVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNP-QQYG---QYMANGWQVPPYGVYG 340
VK +P+ KN + SQ+Y +P +++G + A ++ P GV
Sbjct: 179 ITVKF---AANPNQNKNVALL--------SQLYHSPARRFGGPVHHQAQRFRFSPMGV-D 226
Query: 341 QPWNQQGFGVDQSPSAAW 358
G V + S+ W
Sbjct: 227 HMSGLSGVNVPGNASSGW 244
Score = 57.4 bits (137), Expect = 2e-08
Identities = 48/231 (20%), Positives = 91/231 (39%), Gaps = 63/231 (27%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
LY+ L R +T+ + +FS+ G + +++ +Q + G S F+
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQ--------TTGLS-------RGVAFI 152
Query: 71 EFYEHRDAAAALAAMNGRKILGKE--VKVNWATTPSSQKK-------------------- 108
F + +A A+ + NG K G + V +A P+ K
Sbjct: 153 RFDKRSEAEEAITSFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVH 212
Query: 109 --------------------------DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISD 142
+ S+ + +F+ +L + + F PFG +++
Sbjct: 213 HQAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTN 272
Query: 143 ARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRK 193
+V++D T K KG+GFV+ N +A AI + G LG + ++ ++ T K
Sbjct: 273 VKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 323
>gi|109948285 poly(A) binding protein, cytoplasmic 1-like 2B [Homo
sapiens]
Length = 200
Score = 80.9 bits (198), Expect = 2e-15
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 24/168 (14%)
Query: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
++VGDL PE+T + F+P G I R+ +D T +S GY +V++ +DA+ A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
+ GR +R W+ R P KS N V+ + + +
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGN--------------------VFIKNLGKTIDN 103
Query: 236 QLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNG 279
+ + FS FG I+ +V + KGY FV F ESA AI +NG
Sbjct: 104 KALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 151
Score = 76.6 bits (187), Expect = 3e-14
Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF 69
+LYVG+L +VTE ++ + FS GP S ++ ++ R + Y +
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLG---------------YAY 47
Query: 70 VEFYEHRDAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTE 128
V + + DA AL +N I G+ V++ W+ PS +K N VF+ +L I +
Sbjct: 48 VNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGN---VFIKNLGKTIDNK 104
Query: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
+ + F+ FG I +V D KGYGFV F + AE AI M G +L R+I
Sbjct: 105 ALYNIFSAFGNILSCKVACDEKG--PKGYGFVHFQKQESAERAIDVMNGMFLNYRKI 159
Score = 48.1 bits (113), Expect = 1e-05
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 223 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVS 276
++Y G + +T+ ++ + FSP G I+ IR+ +K GY++V + A A+ +
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 277 VNGTTIEGHVVKCYWGKESPDMTKN 301
+N I+G V+ W + P + K+
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKS 87
>gi|61175237 poly(A) binding protein, cytoplasmic 1-like 2A [Homo
sapiens]
Length = 200
Score = 80.9 bits (198), Expect = 2e-15
Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 24/168 (14%)
Query: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
++VGDL PE+T + F+P G I R+ +D T +S GY +V++ +DA+ A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
+ GR +R W+ R P KS N V+ + + +
Sbjct: 64 NFDVIKGRPVRIMWSQRDPSLRKSGVGN--------------------VFIKNLGKTIDN 103
Query: 236 QLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNG 279
+ + FS FG I+ +V + KGY FV F ESA AI +NG
Sbjct: 104 KALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 151
Score = 76.6 bits (187), Expect = 3e-14
Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 21/177 (11%)
Query: 10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCF 69
+LYVG+L +VTE ++ + FS GP S ++ ++ R + Y +
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLG---------------YAY 47
Query: 70 VEFYEHRDAAAALAAMNGRKILGKEVKVNWATT-PSSQKKDTSNHFHVFVGDLSPEITTE 128
V + + DA AL +N I G+ V++ W+ PS +K N VF+ +L I +
Sbjct: 48 VNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGN---VFIKNLGKTIDNK 104
Query: 129 DIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQI 185
+ + F+ FG I +V D KGYGFV F + AE AI M G +L R+I
Sbjct: 105 ALYNIFSAFGNILSCKVACDEKG--PKGYGFVHFQKQESAERAIDVMNGMFLNYRKI 159
Score = 48.1 bits (113), Expect = 1e-05
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 223 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK------GYSFVRFSTHESAAHAIVS 276
++Y G + +T+ ++ + FSP G I+ IR+ +K GY++V + A A+ +
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 277 VNGTTIEGHVVKCYWGKESPDMTKN 301
+N I+G V+ W + P + K+
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKS 87
>gi|209862867 poly-U binding splicing factor 60KDa isoform c [Homo
sapiens]
Length = 516
Score = 77.8 bits (190), Expect = 2e-14
Identities = 57/197 (28%), Positives = 91/197 (46%), Gaps = 23/197 (11%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
+YVG++ ++ E I Q F+ GP KS M + ++H + FV
Sbjct: 88 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV------------TMKHKG---FAFV 132
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVN------WATTPSSQKKDTSNHFH-VFVGDLSP 123
E+ A AL MN + G+ +KV A Q + + F+ ++V +
Sbjct: 133 EYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQ 192
Query: 124 EITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
+++ +DIKS F FGKI + +D TGK KGYGF+ + +++A+ M LGG+
Sbjct: 193 DLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQ 252
Query: 184 QIRTNWATRKPPAPKST 200
+R A PP P T
Sbjct: 253 YLRVGKAV-TPPMPLLT 268
Score = 63.5 bits (153), Expect = 3e-10
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 17/179 (9%)
Query: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
V+VG + E+ + I+ AFAPFG I + D T K KG+ FV + A+ A+ M
Sbjct: 88 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 147
Query: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
LGGR I+ + A Q + + ++ N +Y + L+D
Sbjct: 148 NSVMLGGRNIKVGRPSNIGQA----------QPIIDQLAEEARAFN-RIYVASVHQDLSD 196
Query: 236 QLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
++ F FG+I + + KGY F+ + +S+ A+ S+N + G ++
Sbjct: 197 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR 255
Score = 43.9 bits (102), Expect = 3e-04
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 222 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV------FPEKGYSFVRFSTHESAAHAIV 275
C VY G I L + +RQ F+PFG I I + KG++FV + E+A A+
Sbjct: 86 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 145
Query: 276 SVNGTTIEGHVVK 288
+N + G +K
Sbjct: 146 QMNSVMLGGRNIK 158
>gi|17298690 poly-U binding splicing factor 60KDa isoform b [Homo
sapiens]
Length = 542
Score = 77.8 bits (190), Expect = 2e-14
Identities = 57/197 (28%), Positives = 91/197 (46%), Gaps = 23/197 (11%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
+YVG++ ++ E I Q F+ GP KS M + ++H + FV
Sbjct: 114 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV------------TMKHKG---FAFV 158
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVN------WATTPSSQKKDTSNHFH-VFVGDLSP 123
E+ A AL MN + G+ +KV A Q + + F+ ++V +
Sbjct: 159 EYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQ 218
Query: 124 EITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
+++ +DIKS F FGKI + +D TGK KGYGF+ + +++A+ M LGG+
Sbjct: 219 DLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQ 278
Query: 184 QIRTNWATRKPPAPKST 200
+R A PP P T
Sbjct: 279 YLRVGKAV-TPPMPLLT 294
Score = 63.5 bits (153), Expect = 3e-10
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 17/179 (9%)
Query: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
V+VG + E+ + I+ AFAPFG I + D T K KG+ FV + A+ A+ M
Sbjct: 114 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 173
Query: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
LGGR I+ + A Q + + ++ N +Y + L+D
Sbjct: 174 NSVMLGGRNIKVGRPSNIGQA----------QPIIDQLAEEARAFN-RIYVASVHQDLSD 222
Query: 236 QLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
++ F FG+I + + KGY F+ + +S+ A+ S+N + G ++
Sbjct: 223 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR 281
Score = 43.9 bits (102), Expect = 3e-04
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 222 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV------FPEKGYSFVRFSTHESAAHAIV 275
C VY G I L + +RQ F+PFG I I + KG++FV + E+A A+
Sbjct: 112 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 171
Query: 276 SVNGTTIEGHVVK 288
+N + G +K
Sbjct: 172 QMNSVMLGGRNIK 184
>gi|17978512 poly-U binding splicing factor 60KDa isoform a [Homo
sapiens]
Length = 559
Score = 77.8 bits (190), Expect = 2e-14
Identities = 57/197 (28%), Positives = 91/197 (46%), Gaps = 23/197 (11%)
Query: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV 70
+YVG++ ++ E I Q F+ GP KS M + ++H + FV
Sbjct: 131 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV------------TMKHKG---FAFV 175
Query: 71 EFYEHRDAAAALAAMNGRKILGKEVKVN------WATTPSSQKKDTSNHFH-VFVGDLSP 123
E+ A AL MN + G+ +KV A Q + + F+ ++V +
Sbjct: 176 EYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQ 235
Query: 124 EITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGR 183
+++ +DIKS F FGKI + +D TGK KGYGF+ + +++A+ M LGG+
Sbjct: 236 DLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQ 295
Query: 184 QIRTNWATRKPPAPKST 200
+R A PP P T
Sbjct: 296 YLRVGKAV-TPPMPLLT 311
Score = 63.5 bits (153), Expect = 3e-10
Identities = 46/179 (25%), Positives = 79/179 (44%), Gaps = 17/179 (9%)
Query: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
V+VG + E+ + I+ AFAPFG I + D T K KG+ FV + A+ A+ M
Sbjct: 131 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 190
Query: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
LGGR I+ + A Q + + ++ N +Y + L+D
Sbjct: 191 NSVMLGGRNIKVGRPSNIGQA----------QPIIDQLAEEARAFN-RIYVASVHQDLSD 239
Query: 236 QLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVK 288
++ F FG+I + + KGY F+ + +S+ A+ S+N + G ++
Sbjct: 240 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR 298
Score = 43.9 bits (102), Expect = 3e-04
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 222 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV------FPEKGYSFVRFSTHESAAHAIV 275
C VY G I L + +RQ F+PFG I I + KG++FV + E+A A+
Sbjct: 129 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 188
Query: 276 SVNGTTIEGHVVK 288
+N + G +K
Sbjct: 189 QMNSVMLGGRNIK 201
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 73.6 bits (179), Expect = 3e-13
Identities = 52/213 (24%), Positives = 105/213 (49%), Gaps = 24/213 (11%)
Query: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTS 63
++ RT++ L+ + + + FS +G + +MI+++ +SRR S G +
Sbjct: 148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDR-NSRR---SKGIA------ 197
Query: 64 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEV--------KVNWATTPSSQKKDTSNHFH 115
+VEF + A+ + G+++LG + K A ++ +K ++
Sbjct: 198 -----YVEFVDVSSVPLAIG-LTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMR 251
Query: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
++VG L IT + ++ F PFG+I +++ D TG+SKGYGF++F + A+ A+ +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQL 208
G L GR ++ T + A ++ ++ +L
Sbjct: 312 NGFELAGRPMKVGHVTERTDASSASSFLDSDEL 344
Score = 72.4 bits (176), Expect = 7e-13
Identities = 58/231 (25%), Positives = 98/231 (42%), Gaps = 23/231 (9%)
Query: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
VF L+ I D++ F+ GK+ D R++ D + +SKG +V F + AI
Sbjct: 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLT 214
Query: 176 GGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTD 235
G + LG P +++Q + + + + S +Y G + +T+
Sbjct: 215 GQRVLG-----------VPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITE 263
Query: 236 QLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 289
++R F PFG+I I++ + KGY F+ FS E A A+ +NG + G +K
Sbjct: 264 DMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 323
Query: 290 YWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMA-----NGWQVPP 335
E D + +D + + G + Q MA G Q+PP
Sbjct: 324 GHVTERTDASSASSFLDSDELERTGIDLGTTGRL-QLMARLAEGTGLQIPP 373
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,169,523
Number of Sequences: 37866
Number of extensions: 843269
Number of successful extensions: 5918
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 4296
Number of HSP's gapped (non-prelim): 1114
length of query: 392
length of database: 18,247,518
effective HSP length: 104
effective length of query: 288
effective length of database: 14,309,454
effective search space: 4121122752
effective search space used: 4121122752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.