Guide to the Human Genome
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Name: TIAL1 Sequence: fasta or formatted (375aa) NCBI GI: 4507499
Description:

TIA-1 related protein isoform 1

Referenced in:

Polyadenylation

Other entries for this name:
alt prot [392aa] TIA-1 related protein isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         26           4
 C cysteine            1.6          6           1
 D aspartate           4.3         16           2
 E glutamate           4.3         16           1
 F phenylalanine       4.8         18           1
 G glycine             9.6         36           2
 H histidine           2.1          8           1
 I isoleucine          4.0         15           1
 K lysine              5.6         21           2
 L leucine             3.5         13           1
 M methionine          3.2         12           2
 N asparagine          4.8         18           2
 P proline             6.9         26           3
 Q glutamine           8.3         31           2
 R arginine            3.2         12           1
 S serine              7.2         27           2
 T threonine           5.9         22           2
 V valine              7.2         27           2
 W tryptophan          2.4          9           1
 Y tyrosine            4.3         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TIA-1 related protein isoform 1 
TIAL1                 0.987   TIA-1 related protein isoform 2 
TIA1                  0.762   TIA1 protein isoform 1 
TIA1                  0.749   TIA1 protein isoform 2 
PABPC3                0.123   poly(A) binding protein, cytoplasmic 3 
PABPC4L               0.119   poly(A) binding protein, cytoplasmic 4-like 
PABPC1                0.118   poly(A) binding protein, cytoplasmic 1 
PABPC4                0.116   poly A binding protein, cytoplasmic 4 isoform 3 [Ho...
PABPC4                0.116   poly A binding protein, cytoplasmic 4 isoform 2 [Homo...
PABPC4                0.116   poly A binding protein, cytoplasmic 4 isoform 1 [Ho...
PABPC5                0.107   poly(A) binding protein, cytoplasmic 5 
PABPC1L               0.107   poly(A)-binding protein, cytoplasmic 1-like 
ELAVL2                0.105   ELAV (embryonic lethal, abnormal vision, Drosophila...
ELAVL4                0.103   ELAV-like 4 isoform 5 
ELAVL4                0.103   ELAV-like 4 isoform 4 
ELAVL4                0.103   ELAV-like 4 isoform 3 
ELAVL4                0.103   ELAV-like 4 isoform 2 
ELAVL4                0.098   ELAV-like 4 isoform 1 
SF3B4                 0.098   splicing factor 3b, subunit 4 
ELAVL3                0.098   ELAV-like protein 3 isoform 2 
ELAVL3                0.097   ELAV-like protein 3 isoform 1 
ELAVL1                0.094   ELAV-like 1 
DAZAP1                0.089   DAZ associated protein 1 isoform a 
DAZAP1                0.089   DAZ associated protein 1 isoform b 
PUF60                 0.076   poly-U binding splicing factor 60KDa isoform c [Hom...
PUF60                 0.076   poly-U binding splicing factor 60KDa isoform b [Homo...
PUF60                 0.076   poly-U binding splicing factor 60KDa isoform a [Homo...
PABPC1L2B             0.073   poly(A) binding protein, cytoplasmic 1-like 2B [Hom...
PABPC1L2A             0.073   poly(A) binding protein, cytoplasmic 1-like 2A [Homo...
RBM39                 0.069   RNA binding motif protein 39 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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