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Search of human proteins with 7657427
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7657427 origin recognition complex subunit 6 [Homo sapiens]
(252 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7657427 origin recognition complex subunit 6 [Homo sapiens] 494 e-140
gi|62243658 PI-3-kinase-related kinase SMG-1 [Homo sapiens] 33 0.24
gi|110825984 malignant fibrous histiocytoma amplified sequence 1... 32 0.53
gi|148746195 trichohyalin [Homo sapiens] 32 0.69
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 32 0.69
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 32 0.69
gi|40217788 Bardet-Biedl syndrome 12 [Homo sapiens] 32 0.69
gi|7661936 scaffold attachment factor B2 [Homo sapiens] 32 0.69
gi|27734883 tripartite motif family-like 2 [Homo sapiens] 31 0.90
gi|109255234 centrosomal protein 290kDa [Homo sapiens] 30 1.5
gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens] 30 1.5
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 30 1.5
gi|21361912 DnaJ (Hsp40) homolog, subfamily C, member 1 [Homo sa... 30 2.0
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 30 2.6
gi|16445033 ACRC protein [Homo sapiens] 30 2.6
gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo... 30 2.6
gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo... 30 2.6
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens] 30 2.6
gi|222537750 ankyrin repeat domain 30B [Homo sapiens] 29 3.4
gi|226502212 methyl-CpG binding domain protein 3-like [Homo sapi... 29 3.4
gi|104526627 triadin [Homo sapiens] 29 3.4
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 29 4.5
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 29 4.5
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 29 4.5
gi|148612838 hypothetical protein LOC158358 [Homo sapiens] 29 4.5
gi|124256489 crooked neck-like 1 protein [Homo sapiens] 29 4.5
gi|11056006 kelch-like 12 [Homo sapiens] 29 4.5
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 29 4.5
gi|31652264 RNA binding motif protein 26 [Homo sapiens] 29 4.5
gi|30795196 LIM homeobox protein 2 [Homo sapiens] 29 4.5
>gi|7657427 origin recognition complex subunit 6 [Homo sapiens]
Length = 252
Score = 494 bits (1271), Expect = e-140
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MGSELIGRLAPRLGLAEPDMLRKAEEYLRLSRVKCVGLSARTTETSSAVMCLDLAASWMK 60
MGSELIGRLAPRLGLAEPDMLRKAEEYLRLSRVKCVGLSARTTETSSAVMCLDLAASWMK
Sbjct: 1 MGSELIGRLAPRLGLAEPDMLRKAEEYLRLSRVKCVGLSARTTETSSAVMCLDLAASWMK 60
Query: 61 CPLDRAYLIKLSGLNKETYQSCLKSFECLLGLNSNIGIRDLAVQFSCIEAVNMASKILKS 120
CPLDRAYLIKLSGLNKETYQSCLKSFECLLGLNSNIGIRDLAVQFSCIEAVNMASKILKS
Sbjct: 61 CPLDRAYLIKLSGLNKETYQSCLKSFECLLGLNSNIGIRDLAVQFSCIEAVNMASKILKS 120
Query: 121 YESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDRLCKQLE 180
YESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDRLCKQLE
Sbjct: 121 YESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDRLCKQLE 180
Query: 181 KIGQQVDREPGDVATPPRKRKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWKRKIL 240
KIGQQVDREPGDVATPPRKRKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWKRKIL
Sbjct: 181 KIGQQVDREPGDVATPPRKRKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWKRKIL 240
Query: 241 ENAASAQKATAE 252
ENAASAQKATAE
Sbjct: 241 ENAASAQKATAE 252
>gi|62243658 PI-3-kinase-related kinase SMG-1 [Homo sapiens]
Length = 3661
Score = 33.1 bits (74), Expect = 0.24
Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 23/145 (15%)
Query: 107 CIEAVNMASKILKSY-ESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATS 165
C + + AS+ S E L Q+VD L P+ +S LLSA K L + + + T
Sbjct: 3333 CQQMCSFASQFNSSVSELELRLLQRVDTGLEHPIGSSEWLLSAHKQLTQDMSTQRAIQTE 3392
Query: 166 GVKKAIFDRLCKQLEKIGQQV-------DREPGDVATPPRKRKKIVVEAPAKEMEKV--- 215
K+ + +C+ ++ + + +R+ GDV K +++A AK+ E
Sbjct: 3393 --KEQQIETVCETIQNLVDNIKTVLTGHNRQLGDV--------KHLLKAMAKDEEAALAD 3442
Query: 216 -EEMPHKPQKDEDLTQDYEEWKRKI 239
E++P++ + L +Y+ W+ I
Sbjct: 3443 GEDVPYENSVRQFL-GEYKSWQDNI 3466
>gi|110825984 malignant fibrous histiocytoma amplified sequence 1
[Homo sapiens]
Length = 1052
Score = 32.0 bits (71), Expect = 0.53
Identities = 28/85 (32%), Positives = 51/85 (60%), Gaps = 8/85 (9%)
Query: 83 LKSFECLLGLNSNIGIRDLAVQFSCIE---AVNMASKILKSYESS-LPQTQQVDLDLSRP 138
L S E L+ L++N G++ L QFSC++ +N++S + + + ++ LP +L LSR
Sbjct: 249 LASLESLM-LDNN-GLQALPAQFSCLQRLKMLNLSSNLFEEFPAALLPLAGLEELYLSRN 306
Query: 139 LFTSA-ALLSAC-KILKLKVDKNKM 161
TS +L+S ++L L +D N++
Sbjct: 307 QLTSVPSLISGLGRLLTLWLDNNRI 331
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 31.6 bits (70), Expect = 0.69
Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 156 VDKNKMVATSGVKKAIFDRLCKQ----LEKIGQQVDREPGDVATPPRKRKKIVVEAPAKE 211
+D+ K G + + DR ++ E +Q++ EPG R+ ++ + ++
Sbjct: 95 LDEEKRARCDGKESLLQDRRQEEDQRRFEPRDRQLEEEPGQRRRQKRQEQERELAEGEEQ 154
Query: 212 MEKVE--EMPHKPQKDEDLTQDYEEWKRKILENAASAQ 247
EK E E + ++DE+L + +EW+ + A Q
Sbjct: 155 SEKQERLEQRDRQRRDEELWRQRQEWQEREERRAEEEQ 192
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 31.6 bits (70), Expect = 0.69
Identities = 31/141 (21%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 114 ASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILK--LKVDKNKMVATSGVKKAI 171
ASKILK + + +++V++ L + L C+ L L +K ++ T +
Sbjct: 490 ASKILKMEKENQRLSKKVEI-LENEIVQEKQSLQNCQNLSKDLMKEKAQLEKTIETLREN 548
Query: 172 FDRLCKQLEKIGQQVDREPGDVATPPRKRKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQD 231
+R K LE+ + +++ + R+R +I EA K++EK ++ H+ K+
Sbjct: 549 SERQIKILEQENEHLNQTVSSL----RQRSQISAEARVKDIEKENKILHESIKETSSKLS 604
Query: 232 YEEWKRKILENAASAQKATAE 252
E++++ ++ K E
Sbjct: 605 KIEFEKRQIKKELEHYKEKGE 625
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 31.6 bits (70), Expect = 0.69
Identities = 31/141 (21%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 114 ASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILK--LKVDKNKMVATSGVKKAI 171
ASKILK + + +++V++ L + L C+ L L +K ++ T +
Sbjct: 490 ASKILKMEKENQRLSKKVEI-LENEIVQEKQSLQNCQNLSKDLMKEKAQLEKTIETLREN 548
Query: 172 FDRLCKQLEKIGQQVDREPGDVATPPRKRKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQD 231
+R K LE+ + +++ + R+R +I EA K++EK ++ H+ K+
Sbjct: 549 SERQIKILEQENEHLNQTVSSL----RQRSQISAEARVKDIEKENKILHESIKETSSKLS 604
Query: 232 YEEWKRKILENAASAQKATAE 252
E++++ ++ K E
Sbjct: 605 KIEFEKRQIKKELEHYKEKGE 625
>gi|40217788 Bardet-Biedl syndrome 12 [Homo sapiens]
Length = 710
Score = 31.6 bits (70), Expect = 0.69
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 97 GIRDLAVQFSCIEAVNMASKILKSYESSLPQTQ-QVDLDLSRPLFTSAALLSACK--ILK 153
G++D+A Q I N++ + LKSYE PQT+ + D + SR L S + C+ IL
Sbjct: 175 GLKDVASQTLTIS--NLSGRPLKSYELFKPQTKVEADNNTSRTLKNSLLADTCCRQSILI 232
Query: 154 LKVDKNKMVATSGVKK 169
N+ T GV K
Sbjct: 233 HSRHFNRTDNTEGVSK 248
>gi|7661936 scaffold attachment factor B2 [Homo sapiens]
Length = 953
Score = 31.6 bits (70), Expect = 0.69
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 141 TSAALLSACKILKLKVD-KNKMVATSGVKKAIFDRLCKQLEKIGQQVDREPGDVATPPRK 199
T LS +++ L+ + K + + T G K + +RL K +++ GQ D ++ +K
Sbjct: 25 TGTRRLSELRVIDLRAELKKRNLDTGGNKSVLMERLKKAVKEEGQDPDEIGIELEATSKK 84
Query: 200 RKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWKRKILEN 242
K V+ E E E+ ED ++D +E LEN
Sbjct: 85 SAKRCVKGLKMEEEGTED-----NGLEDDSRDGQEDMEASLEN 122
>gi|27734883 tripartite motif family-like 2 [Homo sapiens]
Length = 387
Score = 31.2 bits (69), Expect = 0.90
Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 25 EEYLRLSRVKCVGLSARTTETSSAVMCLDLAASWMKCPLDRAYLIKLSGLNKETYQSCLK 84
+E L SR K + T+ + + K ++ Y ++L LN+E Q+ +
Sbjct: 17 QEILNTSREKLEAAKSILTDEQERMAMIQEEEQNFKKMIESEYSMRLRLLNEECEQNLQR 76
Query: 85 SFECLLGLNSNIGIRDLAVQFSCIEAVNMASKILKSYESSLPQTQQVDLDLSRPLFTSAA 144
EC+ S++ +R+ + +A+ +A+++ + ++ L + +V + L S A
Sbjct: 77 QQECI----SDLNLRETLLN----QAIKLATELEEMFQEMLQRLGRVGRENMEKLKESEA 128
Query: 145 LLS--ACKILKLKVDKNK 160
S +LKL V+ K
Sbjct: 129 RASEQVRSLLKLIVELEK 146
>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
Length = 2479
Score = 30.4 bits (67), Expect = 1.5
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 150 KILKLKVDKNKMVATSGVKKAIFDR--LCKQLEKIGQQVDREPGDVATPPRKRKKI---- 203
K++KL+ + ++G + F R +C QLEK +Q DRE D+ K KK+
Sbjct: 90 KVMKLENELEMAQQSAGGRDTRFLRNEIC-QLEKQLEQKDRELEDMEKELEKEKKVNEQL 148
Query: 204 ---VVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWKRKI 239
EA + + E +K+E L QD +++++I
Sbjct: 149 ALRNEEAENENSKLRRENKRLKKKNEQLCQDIIDYQKQI 187
>gi|71361682 nuclear mitotic apparatus protein 1 [Homo sapiens]
Length = 2115
Score = 30.4 bits (67), Expect = 1.5
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 12 RLGLAEPDMLRKAEEYLRLSRVKCVGLSARTTETSSAV 49
RL +AE + +K EE LRL + + SAR E SSA+
Sbjct: 1253 RLVMAESEKSQKLEERLRLLQAETASNSARAAERSSAL 1290
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 30.4 bits (67), Expect = 1.5
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 184 QQVDREPGDVATPPRKRKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWKRKILENA 243
+Q D+EP D R++ + +A + EKV E HK +KD++ T+ Y++ K + ++
Sbjct: 1175 RQKDKEPRD-----RRKDRGAADAGRDKKEKVFEK-HKEKKDKESTEKYKDRKDRASVDS 1228
Query: 244 ASAQK 248
+K
Sbjct: 1229 TQDKK 1233
>gi|21361912 DnaJ (Hsp40) homolog, subfamily C, member 1 [Homo
sapiens]
Length = 554
Score = 30.0 bits (66), Expect = 2.0
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 180 EKIGQQVDREPGDVATPPRKRKKI-VVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWKRK 238
E+ G ++E G PR+RK ++EA AK E E+ K QKD D+ + E +
Sbjct: 425 EQEGDSGEQETGATDARPRRRKPARLLEATAKP-EPEEKSRAKRQKDFDIAEQNESSDEE 483
Query: 239 IL--ENAASAQK 248
L E A SA++
Sbjct: 484 SLRKERARSAEE 495
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 29.6 bits (65), Expect = 2.6
Identities = 16/66 (24%), Positives = 36/66 (54%)
Query: 177 KQLEKIGQQVDREPGDVATPPRKRKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWK 236
++ EK+ +QV++ + +++K E +E E++ E K +++E+ ++ EE
Sbjct: 414 REQEKMWEQVEKMREEKKMQEQEKKTRDQEEKMQEEERIREREKKMREEEETMREQEEKM 473
Query: 237 RKILEN 242
+K EN
Sbjct: 474 QKQEEN 479
>gi|16445033 ACRC protein [Homo sapiens]
Length = 691
Score = 29.6 bits (65), Expect = 2.6
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 187 DREPGDVATPPRKRK---KIVVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWKRK 238
+ EP V KRK K +VE P K K + + P+K + T++ E RK
Sbjct: 400 EEEPAPVVEQSGKRKSKTKTIVEPPRKRQTKTKNIVEPPRKRQTKTKNIVEPLRK 454
>gi|11693132 UPF2 regulator of nonsense transcripts homolog [Homo
sapiens]
Length = 1272
Score = 29.6 bits (65), Expect = 2.6
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 157 DKNKMVATSGVKKAIFDRLCKQLEKIGQQVDREPGDVATPPRKRKKIVVEAPAKEMEKVE 216
D K+ A V KA D+ + + ++ D+E RK+K +E +K E
Sbjct: 39 DDIKLTAKKEVSKAPEDKKKRLEDDKRKKEDKE--------RKKKDEEKVKAEEESKKKE 90
Query: 217 EMPHKPQKDEDLTQDYEEWKRKILENAASAQKATAE 252
E K ++E+ + E+ KR+ E AA+ K E
Sbjct: 91 EEEKKKHQEEERKKQEEQAKRQQEEEAAAQMKEKEE 126
Score = 28.5 bits (62), Expect = 5.8
Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 12/140 (8%)
Query: 122 ESSLPQTQQVDLDLSRPLFTSAA------LLSACKILKLKVDKNKMVATSGVKKAIFDRL 175
+ SLP ++ D R + + L + ++ K DK K + KK +R
Sbjct: 14 KDSLPNNKEKDCSERRTVSSKERPKDDIKLTAKKEVSKAPEDKKKRLEDDKRKKEDKERK 73
Query: 176 CKQLEKIGQQVDREPGDVATPPR----KRKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQD 231
K EK+ + + + + + +RKK E AK ++ E +K+E +
Sbjct: 74 KKDEEKVKAEEESKKKEEEEKKKHQEEERKK--QEEQAKRQQEEEAAAQMKEKEESIQLH 131
Query: 232 YEEWKRKILENAASAQKATA 251
E W+R L ++ A
Sbjct: 132 QEAWERHHLRKELRSKNQNA 151
>gi|18375676 UPF2 regulator of nonsense transcripts homolog [Homo
sapiens]
Length = 1272
Score = 29.6 bits (65), Expect = 2.6
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 157 DKNKMVATSGVKKAIFDRLCKQLEKIGQQVDREPGDVATPPRKRKKIVVEAPAKEMEKVE 216
D K+ A V KA D+ + + ++ D+E RK+K +E +K E
Sbjct: 39 DDIKLTAKKEVSKAPEDKKKRLEDDKRKKEDKE--------RKKKDEEKVKAEEESKKKE 90
Query: 217 EMPHKPQKDEDLTQDYEEWKRKILENAASAQKATAE 252
E K ++E+ + E+ KR+ E AA+ K E
Sbjct: 91 EEEKKKHQEEERKKQEEQAKRQQEEEAAAQMKEKEE 126
Score = 28.5 bits (62), Expect = 5.8
Identities = 30/140 (21%), Positives = 55/140 (39%), Gaps = 12/140 (8%)
Query: 122 ESSLPQTQQVDLDLSRPLFTSAA------LLSACKILKLKVDKNKMVATSGVKKAIFDRL 175
+ SLP ++ D R + + L + ++ K DK K + KK +R
Sbjct: 14 KDSLPNNKEKDCSERRTVSSKERPKDDIKLTAKKEVSKAPEDKKKRLEDDKRKKEDKERK 73
Query: 176 CKQLEKIGQQVDREPGDVATPPR----KRKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQD 231
K EK+ + + + + + +RKK E AK ++ E +K+E +
Sbjct: 74 KKDEEKVKAEEESKKKEEEEKKKHQEEERKK--QEEQAKRQQEEEAAAQMKEKEESIQLH 131
Query: 232 YEEWKRKILENAASAQKATA 251
E W+R L ++ A
Sbjct: 132 QEAWERHHLRKELRSKNQNA 151
>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
Length = 569
Score = 29.6 bits (65), Expect = 2.6
Identities = 43/175 (24%), Positives = 68/175 (38%), Gaps = 33/175 (18%)
Query: 83 LKSFECLLGLNSNIGIRDLAVQFSCIEAVNMASKILKSY-----ESSLPQTQQVDLDLSR 137
LK C LG S QF + + ++ LK + L T+ DLD
Sbjct: 244 LKQGHCTLG--SYADAFQFLAQFLSWDDCRLQNQFLKGLSEFFRKELLWSTEMADLD--- 298
Query: 138 PLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDRLCKQLEKIGQQVDREPGDVATPP 197
L+ C ++ KV K + GV+ IF E+ + + D
Sbjct: 299 ------ELILECVEIERKVRVPKPIPLPGVRNIIFPFAPSPNEEESEDEEYYSEDEDQEA 352
Query: 198 RK--------RKKI------VVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWKRK 238
R+ RK++ + E +EM+K EEM K +K+E ++ EE K+K
Sbjct: 353 RRHRLHSKDQRKRMRAFQQEMKEKEEEEMKKEEEMKKKEEKEE---EEEEEMKQK 404
>gi|222537750 ankyrin repeat domain 30B [Homo sapiens]
Length = 1392
Score = 29.3 bits (64), Expect = 3.4
Identities = 41/178 (23%), Positives = 73/178 (41%), Gaps = 21/178 (11%)
Query: 74 LNKETYQSCLKSFECLLGLNSNIGIRDLAVQFSCIEAVNMASKILKSYESSLPQTQQVDL 133
L K T+Q K F+ L G ++D ++ +C V++ +K L+ + + + D
Sbjct: 591 LPKATHQ---KEFDTLSGKLEESPVKDGLLKPTCGRKVSLPNKALELKDRETFKAESPDK 647
Query: 134 D-LSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDRLCKQLEKIGQQVDREPGD 192
D L +P L K L+LK D+ + A S + C G++V
Sbjct: 648 DGLLKPTCGRKVSLPN-KALELK-DRETLKAESPDNDGLLKPTC------GRKVSLPNKA 699
Query: 193 VATPPRKRKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWKRKILENAASAQKAT 250
+ R+ K P++ +K DE+ + D+E + +L+N KAT
Sbjct: 700 LELKDRETFKAAQMFPSESKQK---------DDEENSWDFESFLETLLQNDVCLPKAT 748
>gi|226502212 methyl-CpG binding domain protein 3-like [Homo
sapiens]
Length = 194
Score = 29.3 bits (64), Expect = 3.4
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 16/122 (13%)
Query: 106 SCIEAVNMASKILKSYES-SLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVAT 164
S ++ N K++ SY SL + L+ S P+ A A +I +
Sbjct: 85 STLDLANTLQKLVPSYTGGSLLEDLASGLEHSCPMPHLACSSDAVEI----------IPA 134
Query: 165 SGVKKAIFDRLCKQLEKIGQQVDREPGDVATPPRKRKKI--VVEAPAKEMEKVEEMPHKP 222
GV I LCKQ + + ++ G V T R+R I + + A E EKV + +P
Sbjct: 135 EGV--GISQLLCKQFLVTEEDIRKQEGKVKTV-RERLAIALIADGLANEAEKVRDQEGRP 191
Query: 223 QK 224
+K
Sbjct: 192 EK 193
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 29.3 bits (64), Expect = 3.4
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 187 DREPGDVATPPRKRKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWKRKILENAASA 246
D + G++ PP ++K+I K+ + +E P + + + ++ E+ K K+ E
Sbjct: 127 DTDKGEIDEPPLRKKEI-----HKDKTEKQEKPERKIQTKVTHKEKEKGKEKVREKEKPE 181
Query: 247 QKAT 250
+KAT
Sbjct: 182 KKAT 185
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 28.9 bits (63), Expect = 4.5
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 173 DRLCKQLEKIGQQVDREPGDVATPPRKRKKI--VVEAPAKEMEKVEEMPHKPQKDEDLTQ 230
+++ +Q EKI +Q ++ ++ +KI E ++ EK+ E K ++ E++TQ
Sbjct: 584 EKVWRQEEKIREQEEKRQEQEEKMWKQEEKIREQEEKIQEQEEKIREQEEKIREQEEMTQ 643
Query: 231 DYEE 234
+ EE
Sbjct: 644 EQEE 647
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 28.9 bits (63), Expect = 4.5
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 153 KLKVDKNKMVATSGVKKAIFDRLCKQLEKIGQQVDREPGDVATPPRKRKKIVVEAPAKEM 212
K+ +K K+ ++ VKK + L +++K +Q DRE + ++K V+ K+
Sbjct: 507 KVYEEKTKLPSSVEVKKKLKKELKTKMKKKEKQRDREREKDKNKDKSKEKDKVKEKEKDK 566
Query: 213 EKVEEMPHKPQKDEDLTQDYEEWKRKILE 241
E E + P K+ ++ + +K KI E
Sbjct: 567 ETGRETKY-PWKEFLKEEEADPYKFKIKE 594
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 28.9 bits (63), Expect = 4.5
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 168 KKAIFDRLCKQLEKIGQQVDREPGDVATPPRKRKKIVVEAPAKEMEKVEEMPHKPQK 224
K+ + + K+++K ++ ++ TPP++ KK V + KE++K E+ P K K
Sbjct: 677 KEEVKKEVKKEIKKEEKKEPKKEVKKETPPKEVKKEVKKEEKKEVKKEEKEPKKEIK 733
Score = 28.1 bits (61), Expect = 7.6
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 203 IVVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWK 236
I PAKE+E + P EDLT+D+EE K
Sbjct: 814 IAAIGPAKELEAERSLMSSP---EDLTKDFEELK 844
>gi|148612838 hypothetical protein LOC158358 [Homo sapiens]
Length = 2103
Score = 28.9 bits (63), Expect = 4.5
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 209 AKEMEKVEEMPHKPQKDEDLTQDYEEWKRKILENAA 244
AKE +++ E K + +E ++ EEW+RK+L AA
Sbjct: 260 AKEEKRLREQERK-EAEEASQKEIEEWERKLLAQAA 294
>gi|124256489 crooked neck-like 1 protein [Homo sapiens]
Length = 848
Score = 28.9 bits (63), Expect = 4.5
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 177 KQLEKIGQQVDREPGDVATPPRKRKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWK 236
+++ K+ + ++ P +V ++++ EA +E+E + P + DE+ DY+ K
Sbjct: 171 QRIPKVAKVKNKAPAEVQITA---EQLLREAKERELELLPPPPQQKITDEEELNDYKLRK 227
Query: 237 RKILEN 242
RK E+
Sbjct: 228 RKTFED 233
>gi|11056006 kelch-like 12 [Homo sapiens]
Length = 568
Score = 28.9 bits (63), Expect = 4.5
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 63 LDRAYLIKLSGLNKETYQSCLKSFECLLGLNSNIGIRDLAVQFSCIEAVNMASKILKSYE 122
L A L++L G+ Q+C + E L ++ +GIRD A +C++ + A + +
Sbjct: 107 LPAACLLQLKGVK----QACCEFLESQLDPSNCLGIRDFAETHNCVDLMQAAEVFSQKHF 162
Query: 123 SSLPQTQQ 130
+ Q ++
Sbjct: 163 PEVVQHEE 170
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 28.9 bits (63), Expect = 4.5
Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 36/147 (24%)
Query: 114 ASKILKSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFD 173
A + K E + Q++D+D +IL+L + V+TS D
Sbjct: 976 AEDLFKELEGEESEPQEMDID---------------EILRLAETRENEVSTSAT-----D 1015
Query: 174 RLCKQLEKIG-------QQVDREPG---DVATPPRKRKKIVVEAPAKEMEKVEEMPH--- 220
L Q + ++++ P D P +RKK+ E KE+E++ +P
Sbjct: 1016 ELLSQFKVANFATMEDEEELEERPHKDWDEIIPEEQRKKVEEEERQKELEEIYMLPRIRS 1075
Query: 221 --KPQKDEDLTQDYEEWKRKILENAAS 245
K + D D E KR+ ++AS
Sbjct: 1076 STKKAQTNDSDSDTES-KRQAQRSSAS 1101
>gi|31652264 RNA binding motif protein 26 [Homo sapiens]
Length = 980
Score = 28.9 bits (63), Expect = 4.5
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 22/123 (17%)
Query: 119 KSYESSLPQTQQVDLDLSRPLFTSAALLSACKILKLKVDKNKMVATSGVKKAIFDRLCKQ 178
+S S LPQ L++ ++ AAL +A K L +V+TS V + ++
Sbjct: 651 QSASSDLPQVLSTSTGLTKTVYNPAALKAAQKTL--------LVSTSAVDNNEAQKKKQE 702
Query: 179 LEKIGQQVDREPGDVATPPRKRKKIVVEAPAKEMEKVEEMPHKPQKDEDLTQDYEEWKRK 238
K+ Q V RKRK+ ++E K +E + + K +K++ + + + K
Sbjct: 703 ALKLQQDV-----------RKRKQEILE---KHIETQKMLISKLEKNKTMKSEDKAEIMK 748
Query: 239 ILE 241
LE
Sbjct: 749 TLE 751
>gi|30795196 LIM homeobox protein 2 [Homo sapiens]
Length = 406
Score = 28.9 bits (63), Expect = 4.5
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 43 TETSSAVMCLDLAASWMKCP---LDRAYLIKLSGLNKETYQSCLKSFECLLGLNSNI 96
TET+ + D AA C DR YL+ ++K+ + CLK EC L L S +
Sbjct: 38 TETTMPSISSDRAALCAGCGGKISDRYYLL---AVDKQWHMRCLKCCECKLNLESEL 91
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,003,475
Number of Sequences: 37866
Number of extensions: 371048
Number of successful extensions: 1743
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1698
Number of HSP's gapped (non-prelim): 82
length of query: 252
length of database: 18,247,518
effective HSP length: 100
effective length of query: 152
effective length of database: 14,460,918
effective search space: 2198059536
effective search space used: 2198059536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.