Guide to the Human Genome
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Name: SAFB2 Sequence: fasta or formatted (953aa) NCBI GI: 7661936
Description:

scaffold attachment factor B2

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         59           2
 C cysteine            0.9          9           1
 D aspartate           7.2         69           2
 E glutamate          13.4        128           3
 F phenylalanine       1.9         18           1
 G glycine             9.1         87           3
 H histidine           3.0         29           2
 I isoleucine          2.3         22           2
 K lysine              7.5         71           2
 L leucine             6.2         59           2
 M methionine          2.1         20           2
 N asparagine          1.7         16           1
 P proline             5.6         53           4
 Q glutamine           4.0         38           2
 R arginine           10.8        103           3
 S serine              8.3         79           2
 T threonine           3.6         34           2
 V valine              4.3         41           2
 W tryptophan          0.6          6           1
 Y tyrosine            1.3         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   scaffold attachment factor B2 
SAFB                  0.657   scaffold attachment factor B 
SLTM                  0.224   modulator of estrogen induced transcription isoform ...
SLTM                  0.223   modulator of estrogen induced transcription isoform ...
LOC100286959          0.045   PREDICTED: hypothetical protein XP_002343921 
TCHH                  0.041   trichohyalin 
RBM25                 0.038   RNA binding motif protein 25 
EIF3A                 0.038   eukaryotic translation initiation factor 3, subunit 1...
LOC100133599          0.037   PREDICTED: hypothetical protein 
LOC100133599          0.035   PREDICTED: hypothetical protein 
LOC100131202          0.034   PREDICTED: hypothetical protein 
LOC727832             0.034   golgi autoantigen, golgin subfamily a-like 
INCENP                0.034   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.034   inner centromere protein antigens 135/155kDa isofor...
LOC440243             0.034   PREDICTED: Putative golgin subfamily A member 6-lik...
MAP4K4                0.034   mitogen-activated protein kinase kinase kinase kinas...
LOC283767             0.034   golgi autoantigen, golgin subfamily a-like 
CALD1                 0.034   caldesmon 1 isoform 1 
LOC645202             0.033   PREDICTED: hypothetical protein LOC645202 
MAP4K4                0.033   mitogen-activated protein kinase kinase kinase kinas...
LOC100131202          0.033   PREDICTED: hypothetical protein 
MAP4K4                0.032   mitogen-activated protein kinase kinase kinase kinas...
ZC3H13                0.032   zinc finger CCCH-type containing 13 
ENAH                  0.032   enabled homolog isoform a 
ENAH                  0.032   enabled homolog isoform b 
LOC283685             0.032   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC283685             0.031   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC100288837          0.030   PREDICTED: hypothetical protein XP_002343931, parti...
LOC100133220          0.029   PREDICTED: hypothetical protein 
PPIG                  0.028   peptidylprolyl isomerase G 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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