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Search of human proteins with 71274136
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|71274136 family with sequence similarity 24, member A [Homo
sapiens]
(105 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|71274136 family with sequence similarity 24, member A [Homo s... 219 4e-58
gi|116006949 hypothetical protein LOC196792 [Homo sapiens] 141 1e-34
gi|89191868 von Willebrand factor preproprotein [Homo sapiens] 30 0.53
gi|148746187 zinc finger CCCH-type containing 12B [Homo sapiens] 29 0.90
gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming... 28 1.2
gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming... 28 1.2
gi|45505165 leukocyte specific transcript 1 isoform 1 [Homo sapi... 27 3.4
gi|32967599 ankyrin 3 isoform 2 [Homo sapiens] 27 4.5
gi|239758034 PREDICTED: keratin associated protein 4-8 isoform 3... 26 5.9
gi|239758032 PREDICTED: keratin associated protein 4-8 isoform 2... 26 5.9
gi|239758030 PREDICTED: keratin associated protein 4-8 isoform 1... 26 5.9
gi|239756798 PREDICTED: similar to keratin associated protein 4-... 26 5.9
gi|239756796 PREDICTED: similar to keratin associated protein 4-... 26 5.9
gi|239756794 PREDICTED: similar to keratin associated protein 4-... 26 5.9
gi|239751310 PREDICTED: keratin associated protein 4-9 isoform 2... 26 5.9
gi|239751308 PREDICTED: keratin associated protein 4-9 isoform 1... 26 5.9
gi|239745805 PREDICTED: keratin associated protein 4.8 [Homo sap... 26 5.9
gi|225690554 keratin associated protein 4.8 [Homo sapiens] 26 5.9
gi|225690551 keratin associated protein 4-9 [Homo sapiens] 26 5.9
gi|166795236 tumor-associated calcium signal transducer 2 precur... 26 5.9
gi|13569952 keratin associated protein 9-9 [Homo sapiens] 26 5.9
gi|239756792 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|169212012 PREDICTED: keratin-associated protein 9-2-like 1-li... 26 7.7
gi|239751312 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|239745809 PREDICTED: hypothetical protein [Homo sapiens] 26 7.7
gi|55770876 notch4 preproprotein [Homo sapiens] 26 7.7
gi|32698790 STRA8 [Homo sapiens] 26 7.7
gi|153218552 keratin associated protein 9.8 [Homo sapiens] 26 7.7
gi|16118240 keratin associated protein 9.2 [Homo sapiens] 26 7.7
gi|16118229 keratin associated protein 9-4 [Homo sapiens] 26 7.7
>gi|71274136 family with sequence similarity 24, member A [Homo
sapiens]
Length = 105
Score = 219 bits (558), Expect = 4e-58
Identities = 105/105 (100%), Positives = 105/105 (100%)
Query: 1 MAKMFDLRTKIMIGIGSSLLVAAMVLLSVVFCLYFKVAKALKAAKDPDAVAVKNHNPDKV 60
MAKMFDLRTKIMIGIGSSLLVAAMVLLSVVFCLYFKVAKALKAAKDPDAVAVKNHNPDKV
Sbjct: 1 MAKMFDLRTKIMIGIGSSLLVAAMVLLSVVFCLYFKVAKALKAAKDPDAVAVKNHNPDKV 60
Query: 61 CWATNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCCCDINEGL 105
CWATNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCCCDINEGL
Sbjct: 61 CWATNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCCCDINEGL 105
>gi|116006949 hypothetical protein LOC196792 [Homo sapiens]
Length = 94
Score = 141 bits (355), Expect = 1e-34
Identities = 65/91 (71%), Positives = 73/91 (80%)
Query: 15 IGSSLLVAAMVLLSVVFCLYFKVAKALKAAKDPDAVAVKNHNPDKVCWATNSQAKATTME 74
I +L A ++L+ VV CLYFK+ ALKAAK+P+AVAVKNHNPDKV WA NSQAK E
Sbjct: 4 IAGGILAALLLLIVVVLCLYFKIHNALKAAKEPEAVAVKNHNPDKVWWAKNSQAKTIATE 63
Query: 75 SCPSLQCCEGCRMHASSDSLPPCCCDINEGL 105
SCP+LQCCEG RM AS DSLPPCCCDINEGL
Sbjct: 64 SCPALQCCEGYRMCASFDSLPPCCCDINEGL 94
>gi|89191868 von Willebrand factor preproprotein [Homo sapiens]
Length = 2813
Score = 29.6 bits (65), Expect = 0.53
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 52 VKNHNPDKVCWATNSQAKATTMESCPSLQC-----CEGCRMHASSDSLPP---CCCD 100
V +H P ++C + + T + CP+ + CE R+ ++D P C CD
Sbjct: 2272 VPDHQPCQICTCLSGRKVNCTTQPCPTAKAPTCGLCEVARLRQNADQCCPEYECVCD 2328
>gi|148746187 zinc finger CCCH-type containing 12B [Homo sapiens]
Length = 825
Score = 28.9 bits (63), Expect = 0.90
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 41 LKAAKDPDAVAVKNHNPDKVCWATNSQAKATTMESCPSLQCC 82
+ + DP+ +++K+ + K C + Q K M S P Q C
Sbjct: 29 MSSESDPEQISLKSSDNSKSCQPRDGQLKKKEMHSKPHRQLC 70
>gi|195927030 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 2 [Homo sapiens]
Length = 428
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 59 KVCWATNSQAKATTMESCPSL--QCCEGCRMHASSDSLPPCCCDI 101
K+C +N K +E C L CC H+ S + P C C+I
Sbjct: 306 KICAESNKDVK---IEPCGHLLCSCCLAAWQHSDSQTCPFCRCEI 347
>gi|195927027 Cas-Br-M (murine) ecotropic retroviral transforming
sequence c isoform 1 [Homo sapiens]
Length = 474
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
Query: 59 KVCWATNSQAKATTMESCPSL--QCCEGCRMHASSDSLPPCCCDI 101
K+C +N K +E C L CC H+ S + P C C+I
Sbjct: 352 KICAESNKDVK---IEPCGHLLCSCCLAAWQHSDSQTCPFCRCEI 393
>gi|45505165 leukocyte specific transcript 1 isoform 1 [Homo
sapiens]
Length = 118
Score = 26.9 bits (58), Expect = 3.4
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 18/69 (26%)
Query: 13 IGIGSSLLVAAMVLLSVVFCLYFKVAKALKAAKDPDAVAVKNHNPDKVCWATNSQAKATT 72
+G+G LL+ A+VLLS C + K L+ + W Q++ +T
Sbjct: 14 LGLGG-LLLLAVVLLSACLCWLHRRVKRLERS-----------------WPRAPQSRNST 55
Query: 73 MESCPSLQC 81
M C QC
Sbjct: 56 MHLCRGCQC 64
>gi|32967599 ankyrin 3 isoform 2 [Homo sapiens]
Length = 1001
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 36 KVAKALKAAKDPDAVAVKNHNPDKVCWATNSQAKATTMESCPSLQCCEGCRMHASSDSLP 95
K+ ++ + P+AV V + VC + ++ + +ESC + G + DS
Sbjct: 796 KLEDSVPLTEMPEAVDVDESQLENVCLSWQNETSSGNLESCAQARRVTGGLLDRLDDSPD 855
Query: 96 PC 97
C
Sbjct: 856 QC 857
>gi|239758034 PREDICTED: keratin associated protein 4-8 isoform 3
[Homo sapiens]
Length = 204
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 60 VCWATNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCCC 99
VC N + ++ SC CCE S PCCC
Sbjct: 137 VCCQPNCCRPSCSISSCCRPSCCE-------SSCCRPCCC 169
>gi|239758032 PREDICTED: keratin associated protein 4-8 isoform 2
[Homo sapiens]
Length = 193
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 60 VCWATNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCCC 99
VC N + ++ SC CCE S PCCC
Sbjct: 126 VCCQPNCCRPSCSISSCCRPSCCE-------SSCCRPCCC 158
>gi|239758030 PREDICTED: keratin associated protein 4-8 isoform 1
[Homo sapiens]
Length = 220
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 60 VCWATNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCCC 99
VC N + ++ SC CCE S PCCC
Sbjct: 153 VCCQPNCCRPSCSISSCCRPSCCE-------SSCCRPCCC 185
>gi|239756798 PREDICTED: similar to keratin associated protein 4-12
isoform 3 [Homo sapiens]
Length = 204
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 60 VCWATNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCCC 99
VC N + ++ SC CCE S PCCC
Sbjct: 137 VCCQPNCCRPSCSISSCCRPSCCE-------SSCCRPCCC 169
>gi|239756796 PREDICTED: similar to keratin associated protein 4-12
isoform 2 [Homo sapiens]
Length = 193
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 60 VCWATNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCCC 99
VC N + ++ SC CCE S PCCC
Sbjct: 126 VCCQPNCCRPSCSISSCCRPSCCE-------SSCCRPCCC 158
>gi|239756794 PREDICTED: similar to keratin associated protein 4-12
isoform 1 [Homo sapiens]
Length = 220
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 60 VCWATNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCCC 99
VC N + ++ SC CCE S PCCC
Sbjct: 153 VCCQPNCCRPSCSISSCCRPSCCE-------SSCCRPCCC 185
>gi|239751310 PREDICTED: keratin associated protein 4-9 isoform 2
[Homo sapiens]
Length = 195
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 60 VCWATNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCCC 99
VC N + ++ SC CCE S PCCC
Sbjct: 128 VCCQPNCCRPSCSISSCCRPSCCE-------SSCCRPCCC 160
>gi|239751308 PREDICTED: keratin associated protein 4-9 isoform 1
[Homo sapiens]
Length = 210
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 60 VCWATNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCCC 99
VC N + ++ SC CCE S PCCC
Sbjct: 143 VCCQPNCCRPSCSISSCCRPSCCE-------SSCCRPCCC 175
>gi|239745805 PREDICTED: keratin associated protein 4.8 [Homo
sapiens]
Length = 185
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 60 VCWATNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCCC 99
VC N + ++ SC CCE S PCCC
Sbjct: 118 VCCQPNCCRPSCSISSCCRPSCCE-------SSCCRPCCC 150
>gi|225690554 keratin associated protein 4.8 [Homo sapiens]
Length = 185
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 60 VCWATNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCCC 99
VC N + ++ SC CCE S PCCC
Sbjct: 118 VCCQPNCCRPSCSISSCCRPSCCE-------SSCCRPCCC 150
>gi|225690551 keratin associated protein 4-9 [Homo sapiens]
Length = 210
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 7/40 (17%)
Query: 60 VCWATNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCCC 99
VC N + ++ SC CCE S PCCC
Sbjct: 143 VCCQPNCCRPSCSISSCCRPSCCE-------SSCCRPCCC 175
>gi|166795236 tumor-associated calcium signal transducer 2 precursor
[Homo sapiens]
Length = 323
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 56 NPDKVCWATNSQAKATTMESCPSLQCCEGCRMH 88
N VCW NS T + SL+C E R H
Sbjct: 120 NQTSVCWCVNSVGVRRTDKGDLSLRCDELVRTH 152
>gi|13569952 keratin associated protein 9-9 [Homo sapiens]
Length = 154
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 8/41 (19%)
Query: 61 CWATNSQAKATTMESCPSLQCCEG--CRMHASSDSLPPCCC 99
CW K TT+ +C S CC+ C P CC
Sbjct: 23 CW------KPTTVTTCSSTPCCQPSCCVSSCCQPCCRPACC 57
>gi|239756792 PREDICTED: hypothetical protein [Homo sapiens]
Length = 188
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 12/38 (31%)
Query: 61 CWATNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCC 98
CW K TT+ +C S CC+ S +P CC
Sbjct: 23 CW------KPTTVTTCSSTPCCQ------PSCCVPSCC 48
>gi|169212012 PREDICTED: keratin-associated protein 9-2-like
1-like [Homo sapiens]
Length = 169
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 10/39 (25%)
Query: 61 CWATNSQAKATTMESCPSLQCCE-GCRMHASSDSLPPCC 98
CW K TT+ +C S CC+ C S PCC
Sbjct: 18 CW------KPTTVTTCSSTPCCQPSC---CVSSCCQPCC 47
>gi|239751312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 188
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 12/38 (31%)
Query: 61 CWATNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCC 98
CW K TT+ +C S CC+ S +P CC
Sbjct: 23 CW------KPTTVTTCSSTPCCQ------PSCCVPSCC 48
>gi|239745809 PREDICTED: hypothetical protein [Homo sapiens]
Length = 188
Score = 25.8 bits (55), Expect = 7.7
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 12/38 (31%)
Query: 61 CWATNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCC 98
CW K TT+ +C S CC+ S +P CC
Sbjct: 23 CW------KPTTVTTCSSTPCCQ------PSCCVPSCC 48
>gi|55770876 notch4 preproprotein [Homo sapiens]
Length = 2003
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 64 TNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCCC 99
T + +A + CP C + R H + P C C
Sbjct: 110 TGERCQAKLEDPCPPSFCSKRGRCHIQASGRPQCSC 145
>gi|32698790 STRA8 [Homo sapiens]
Length = 330
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 62 WATNSQAKATTMESCPSLQCCEGCRMHASSDSLPPCC 98
WA + AT E+C C EG + DS C
Sbjct: 200 WAQKHRGPATLAEACREPACAEGSVKDSGVDSQGASC 236
>gi|153218552 keratin associated protein 9.8 [Homo sapiens]
Length = 159
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 10/39 (25%)
Query: 61 CWATNSQAKATTMESCPSLQCCE-GCRMHASSDSLPPCC 98
CW K TT+ +C S CC+ C S PCC
Sbjct: 18 CW------KPTTVTTCSSTPCCQPSC---CVSSCCQPCC 47
>gi|16118240 keratin associated protein 9.2 [Homo sapiens]
Length = 174
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 10/39 (25%)
Query: 61 CWATNSQAKATTMESCPSLQCCE-GCRMHASSDSLPPCC 98
CW K TT+ +C S CC+ C S PCC
Sbjct: 23 CW------KPTTVTTCSSTPCCQPAC---CVSSCCQPCC 52
>gi|16118229 keratin associated protein 9-4 [Homo sapiens]
Length = 154
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 10/39 (25%)
Query: 61 CWATNSQAKATTMESCPSLQCCE-GCRMHASSDSLPPCC 98
CW K TT+ +C S CC+ C S PCC
Sbjct: 23 CW------KPTTVTTCSSTPCCQPSC---CVSSCCQPCC 52
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.132 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,492,412
Number of Sequences: 37866
Number of extensions: 111823
Number of successful extensions: 584
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 575
Number of HSP's gapped (non-prelim): 34
length of query: 105
length of database: 18,247,518
effective HSP length: 76
effective length of query: 29
effective length of database: 15,369,702
effective search space: 445721358
effective search space used: 445721358
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.