Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM24B Sequence: fasta or formatted (94aa) NCBI GI: 116006949
Description:

hypothetical protein LOC196792

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         13           2
 C cysteine            8.5          8           3
 D aspartate           3.2          3           1
 E glutamate           5.3          5           1
 F phenylalanine       2.1          2           1
 G glycine             4.3          4           2
 H histidine           2.1          2           1
 I isoleucine          6.4          6           1
 K lysine              7.4          7           1
 L leucine            11.7         11           4
 M methionine          2.1          2           1
 N asparagine          5.3          5           1
 P proline             6.4          6           2
 Q glutamine           2.1          2           1
 R arginine            1.1          1           1
 S serine              4.3          4           1
 T threonine           2.1          2           1
 V valine              7.4          7           3
 W tryptophan          2.1          2           2
 Y tyrosine            2.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC196792 
FAM24A                0.663   family with sequence similarity 24, member A 
LRFN2                 0.029   leucine rich repeat and fibronectin type III domain ...
LRFN5                 0.017   leucine rich repeat and fibronectin type III domain ...
MRC1                  0.011   mannose receptor C type 1 precursor 
GGT1                  0.011   gamma-glutamyltransferase 1 precursor 
GGT1                  0.011   gamma-glutamyltransferase 1 precursor 
GGT1                  0.011   gamma-glutamyltransferase 1 precursor 
GGT1                  0.011   gamma-glutamyltransferase 1 precursor 
GGT2                  0.011   PREDICTED: gamma-glutamyltransferase 2 isoform 3 [H...
GGT2                  0.011   PREDICTED: gamma-glutamyltransferase 2 isoform 1 [H...
NELL2                 0.011   NEL-like protein 2 isoform d 
NELL2                 0.011   NEL-like protein 2 isoform c 
NELL2                 0.011   NEL-like protein 2 isoform b precursor 
NELL2                 0.011   NEL-like protein 2 isoform a 
NELL2                 0.011   NEL-like protein 2 isoform b precursor 
MRC1L1                0.011   mannose receptor, C type 1-like 1 
PTPRH                 0.011   protein tyrosine phosphatase, receptor type, H isof...
PTPRH                 0.011   protein tyrosine phosphatase, receptor type, H isof...
KRT37                 0.011   keratin 37 
LRFN3                 0.011   leucine rich repeat and fibronectin type III domain ...
SLC38A4               0.011   solute carrier family 38, member 4 
SLC38A4               0.011   solute carrier family 38, member 4 
KIAA1549              0.011   hypothetical protein LOC57670 
ITGAD                 0.011   integrin, alpha D precursor 
ITGA7                 0.006   integrin alpha 7 isoform 3 
ITGA7                 0.006   integrin alpha 7 isoform 1 precursor 
ITGA7                 0.006   integrin alpha 7 isoform 2 precursor 
LOC643750             0.006   PREDICTED: hypothetical protein 
TRIM28                0.006   tripartite motif-containing 28 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press