Guide to the Human Genome
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Name: STRA8 Sequence: fasta or formatted (330aa) NCBI GI: 32698790
Description:

STRA8

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         31           2
 C cysteine            1.8          6           1
 D aspartate           5.2         17           2
 E glutamate           8.8         29           2
 F phenylalanine       4.2         14           2
 G glycine             3.3         11           1
 H histidine           2.1          7           1
 I isoleucine          4.2         14           2
 K lysine              5.5         18           2
 L leucine            10.6         35           2
 M methionine          2.1          7           1
 N asparagine          4.8         16           2
 P proline             4.8         16           1
 Q glutamine           6.4         21           1
 R arginine            3.9         13           3
 S serine             10.9         36           5
 T threonine           4.2         14           1
 V valine              4.2         14           1
 W tryptophan          1.5          5           1
 Y tyrosine            1.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   STRA8 
LHX6                  0.011   LIM homeobox protein 6 isoform 2 
LHX6                  0.011   LIM homeobox protein 6 isoform 1 
MUC16                 0.011   mucin 16 
CENPE                 0.011   centromere protein E 
DBN1                  0.011   drebrin 1 isoform b 
DBN1                  0.011   drebrin 1 isoform a 
GOLGB1                0.011   golgi autoantigen, golgin subfamily b, macrogolgin ...
RSF1                  0.009   remodeling and spacing factor 1 
NUP62                 0.009   nucleoporin 62kDa 
NUP62                 0.009   nucleoporin 62kDa 
NUP62                 0.009   nucleoporin 62kDa 
NUP62                 0.009   nucleoporin 62kDa 
NUP133                0.008   nucleoporin 133kDa 
C9orf117              0.008   hypothetical protein LOC286207 
GRIN2C                0.008   N-methyl-D-aspartate receptor subunit 2C precursor [...
USP28                 0.008   ubiquitin specific protease 28 
PJA2                  0.008   praja 2, RING-H2 motif containing 
KIF3A                 0.006   kinesin family member 3A 
EPS15L1               0.006   epidermal growth factor receptor pathway substrate 1...
GTF2E1                0.006   general transcription factor IIE, polypeptide 1, al...
MUC17                 0.006   mucin 17 
ZC3H7B                0.005   zinc finger CCCH-type containing 7B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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