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Search of human proteins with 13569956
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13569956 actin related protein 2/3 complex, subunit 5-like
[Homo sapiens]
(153 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13569956 actin related protein 2/3 complex, subunit 5-like [H... 298 2e-81
gi|5031593 actin related protein 2/3 complex subunit 5 [Homo sap... 211 1e-55
gi|7656959 calpain 7 [Homo sapiens] 33 0.12
gi|221316760 L1 cell adhesion molecule isoform 3 precursor [Homo... 30 0.81
gi|13435353 L1 cell adhesion molecule isoform 2 precursor [Homo ... 30 0.81
gi|4557707 L1 cell adhesion molecule isoform 1 precursor [Homo s... 30 0.81
gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens] 30 0.81
gi|194097392 Golgi autoantigen, golgin subfamily a, 2 [Homo sapi... 28 2.3
gi|4506057 cAMP-dependent protein kinase catalytic subunit beta ... 28 4.0
gi|46909587 cAMP-dependent protein kinase catalytic subunit beta... 28 4.0
gi|209862861 hypothetical protein LOC9840 [Homo sapiens] 28 4.0
gi|149363704 hypothetical protein LOC9840 [Homo sapiens] 28 4.0
gi|217330594 tubulin tyrosine ligase-like family, member 4 [Homo... 27 5.2
gi|4505075 v-maf musculoaponeurotic fibrosarcoma oncogene homolo... 27 5.2
gi|48762926 PWP2 periodic tryptophan protein homolog [Homo sapiens] 27 5.2
gi|48255913 tripartite motif-containing 16 [Homo sapiens] 27 6.8
gi|4505073 v-maf musculoaponeurotic fibrosarcoma oncogene homolo... 27 6.8
gi|39812133 ankyrin repeat domain 2 isoform a [Homo sapiens] 27 6.8
gi|194018403 ankyrin repeat domain 2 isoform b [Homo sapiens] 27 6.8
gi|49619228 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 27 6.8
gi|45505137 podocan [Homo sapiens] 27 6.8
gi|119395754 keratin 5 [Homo sapiens] 27 8.9
gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens] 27 8.9
gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens] 27 8.9
gi|215490093 ATPase, (Na+)/K+ transporting, beta 4 polypeptide i... 27 8.9
gi|6912256 ATPase, (Na+)/K+ transporting, beta 4 polypeptide iso... 27 8.9
gi|14150035 pleckstrin and Sec7 domain containing 2 [Homo sapiens] 27 8.9
gi|50811889 centrosomal protein 192kDa [Homo sapiens] 27 8.9
>gi|13569956 actin related protein 2/3 complex, subunit 5-like [Homo
sapiens]
Length = 153
Score = 298 bits (762), Expect = 2e-81
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHAA 60
MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHAA
Sbjct: 1 MARNTLSSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHAA 60
Query: 61 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPT 120
LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPT
Sbjct: 61 LRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPT 120
Query: 121 ENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
ENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV
Sbjct: 121 ENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
>gi|5031593 actin related protein 2/3 complex subunit 5 [Homo
sapiens]
Length = 151
Score = 211 bits (538), Expect = 1e-55
Identities = 106/154 (68%), Positives = 131/154 (85%), Gaps = 4/154 (2%)
Query: 1 MARNTLSS-RFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHA 59
M++NT+SS RFR+VD+DE+DENKFVDE++ A GPD EVD LRQG+M A A
Sbjct: 1 MSKNTVSSARFRKVDVDEYDENKFVDEEDGGDGQA---GPDEGEVDSCLRQGNMTAALQA 57
Query: 60 ALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKP 119
AL+N P+NTK+QAVK+RA +VLKVL +FK+++IE+AVQSLD+NGVDLLMKYIYKGFE P
Sbjct: 58 ALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIYKGFESP 117
Query: 120 TENSSAVLLQWHEKALAVGGLGSIIRVLTARKTV 153
++NSSA+LLQWHEKALA GG+GSI+RVLTARKTV
Sbjct: 118 SDNSSAMLLQWHEKALAAGGVGSIVRVLTARKTV 151
>gi|7656959 calpain 7 [Homo sapiens]
Length = 813
Score = 32.7 bits (73), Expect = 0.12
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 52 DMLRAFHAALRNS---PVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLL 108
+ ++A H+A+++ P+ +K+Q ERA +V + + +E A++ L VDL
Sbjct: 62 ERVQALHSAVQSKSADPLKSKHQLDLERAHFLVTQAFDEDEKENVEDAIE-LYTEAVDLC 120
Query: 109 MKYIYKGFEKPTEN 122
+K Y+ +K +N
Sbjct: 121 LKTSYETADKVLQN 134
>gi|221316760 L1 cell adhesion molecule isoform 3 precursor [Homo
sapiens]
Length = 1248
Score = 30.0 bits (66), Expect = 0.81
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 15/72 (20%)
Query: 65 PVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPTENSS 124
P K QAV + +G +V + + QA+ L+ G+++L NSS
Sbjct: 778 PYEIKVQAVNSQGKGPEPQVTIGYSGEDYPQAIPELE--GIEIL-------------NSS 822
Query: 125 AVLLQWHEKALA 136
AVL++W LA
Sbjct: 823 AVLVKWRPVDLA 834
>gi|13435353 L1 cell adhesion molecule isoform 2 precursor [Homo
sapiens]
Length = 1253
Score = 30.0 bits (66), Expect = 0.81
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 15/72 (20%)
Query: 65 PVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPTENSS 124
P K QAV + +G +V + + QA+ L+ G+++L NSS
Sbjct: 783 PYEIKVQAVNSQGKGPEPQVTIGYSGEDYPQAIPELE--GIEIL-------------NSS 827
Query: 125 AVLLQWHEKALA 136
AVL++W LA
Sbjct: 828 AVLVKWRPVDLA 839
>gi|4557707 L1 cell adhesion molecule isoform 1 precursor [Homo
sapiens]
Length = 1257
Score = 30.0 bits (66), Expect = 0.81
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 15/72 (20%)
Query: 65 PVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPTENSS 124
P K QAV + +G +V + + QA+ L+ G+++L NSS
Sbjct: 783 PYEIKVQAVNSQGKGPEPQVTIGYSGEDYPQAIPELE--GIEIL-------------NSS 827
Query: 125 AVLLQWHEKALA 136
AVL++W LA
Sbjct: 828 AVLVKWRPVDLA 839
>gi|183583553 collagen, type XXIX, alpha 1 [Homo sapiens]
Length = 2526
Score = 30.0 bits (66), Expect = 0.81
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 9/89 (10%)
Query: 44 VDGLLRQGDMLRAFHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSS-EIEQAVQSLDR 102
+ G L+ G L+ H ++P+N +++ + +L VL + +S E+E+A ++L +
Sbjct: 104 IGGSLQIGKALQEAHRTYFSAPINGRDR----KQFPPILVVLASAESEDEVEEASKALQK 159
Query: 103 NGVDLLMKYIYKGFEKPTENSSAVLLQWH 131
+GV K I G +K +E + + H
Sbjct: 160 DGV----KIISVGVQKASEENLKAMATSH 184
>gi|194097392 Golgi autoantigen, golgin subfamily a, 2 [Homo
sapiens]
Length = 1002
Score = 28.5 bits (62), Expect = 2.3
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 16 DEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHAALRNS 64
D D + DE+EE A A P P PS + L + M+ F++A+ ++
Sbjct: 699 DGLDREEEEDEEEEEEEAVAVPQPMPSIPEDLESREAMVAFFNSAVASA 747
>gi|4506057 cAMP-dependent protein kinase catalytic subunit beta
isoform 2 [Homo sapiens]
Length = 351
Score = 27.7 bits (60), Expect = 4.0
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 89 KSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPTENSSAVLLQWHEKALAVGGLGSIIRV 146
K SE+E + L + D L K+ E PT+N++ + +K L G G ++ V
Sbjct: 9 KGSEVESVKEFLAKAKEDFLKKW-----ENPTQNNAGLEDFERKKTLGTGSFGRVMLV 61
>gi|46909587 cAMP-dependent protein kinase catalytic subunit beta
isoform 3 [Homo sapiens]
Length = 257
Score = 27.7 bits (60), Expect = 4.0
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 89 KSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPTENSSAVLLQWHEKALAVGGLGSIIRV 146
K SE+E + L + D L K+ E PT+N++ + +K L G G ++ V
Sbjct: 9 KGSEVESVKEFLAKAKEDFLKKW-----ENPTQNNAGLEDFERKKTLGTGSFGRVMLV 61
>gi|209862861 hypothetical protein LOC9840 [Homo sapiens]
Length = 521
Score = 27.7 bits (60), Expect = 4.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 26 EQEEAAAAAAEPGPDPSEVDGLLRQGD 52
E+E AAA P P+PS +D + ++G+
Sbjct: 30 EEEAAAALQDVPDPEPSSLDDVFQEGN 56
>gi|149363704 hypothetical protein LOC9840 [Homo sapiens]
Length = 521
Score = 27.7 bits (60), Expect = 4.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 26 EQEEAAAAAAEPGPDPSEVDGLLRQGD 52
E+E AAA P P+PS +D + ++G+
Sbjct: 30 EEEAAAALQDVPDPEPSSLDDVFQEGN 56
>gi|217330594 tubulin tyrosine ligase-like family, member 4 [Homo
sapiens]
Length = 1199
Score = 27.3 bits (59), Expect = 5.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 87 NFKSSEIEQAVQSLDRNGVDLLMKYIYKGFEKPTENSSA 125
N +++ EQ GVDLL + YKGF + SA
Sbjct: 1046 NILTTQWEQKYHGNKLKGVDLLRSWCYKGFHMGVVSDSA 1084
>gi|4505075 v-maf musculoaponeurotic fibrosarcoma oncogene homolog K
[Homo sapiens]
Length = 156
Score = 27.3 bits (59), Expect = 5.2
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 7 SSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHAALRNSPV 66
S R +RV E E + V+ Q+E A E E+D L + + L+ F + PV
Sbjct: 67 SCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFARTVARGPV 126
Query: 67 NTKNQAVKERAQGVVLKVLTNFKSSEI 93
A V+T KS+E+
Sbjct: 127 APSKVA--------TTSVITIVKSTEL 145
>gi|48762926 PWP2 periodic tryptophan protein homolog [Homo sapiens]
Length = 919
Score = 27.3 bits (59), Expect = 5.2
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 41 PSEVDGLLRQGDMLRAFHAALRNSPVNTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSL 100
P V LRQ D RA ALR + +A++ +G EIE SL
Sbjct: 747 PGRVREALRQQDFTRAILMALRLNESKLVQEALEAVPRG------------EIEVVTSSL 794
Query: 101 DRNGVDLLMKYIYKGFEKPTENSSAVLLQWHEKALAVGG 139
V+ +++++ FE L W K L + G
Sbjct: 795 PELYVEKVLEFLASSFE--VSRHLEFYLLWTHKLLMLHG 831
>gi|48255913 tripartite motif-containing 16 [Homo sapiens]
Length = 564
Score = 26.9 bits (58), Expect = 6.8
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 51 GDMLRAFHAALRNSPV--NTKNQAVKERAQGVVLKVLTNFKSSEIEQAVQSLDR-----N 103
G++L A A N + K QA +A G+ K ++S+E+E++ Q L+R N
Sbjct: 220 GELLAAVRKAQANVMLFLEEKEQAALSQANGI--KAHLEYRSAEMEKSKQELERMAAISN 277
Query: 104 GVDLLMKY 111
V L +Y
Sbjct: 278 TVQFLEEY 285
>gi|4505073 v-maf musculoaponeurotic fibrosarcoma oncogene homolog G
[Homo sapiens]
Length = 162
Score = 26.9 bits (58), Expect = 6.8
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 7 SSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHAALRNSPV 66
S R +RV E E + + Q+E A+E E+D L + + L+ F + SPV
Sbjct: 67 SCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFARTVARSPV 126
>gi|39812133 ankyrin repeat domain 2 isoform a [Homo sapiens]
Length = 360
Score = 26.9 bits (58), Expect = 6.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 26 EQEEAAAAAAEPGPDPSEVDGLLRQGDMLRA 56
++ +A AA+ EP P+P E+ G + + L+A
Sbjct: 125 KKRDALAASHEPPPEPEEITGPVDEETFLKA 155
>gi|194018403 ankyrin repeat domain 2 isoform b [Homo sapiens]
Length = 327
Score = 26.9 bits (58), Expect = 6.8
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 26 EQEEAAAAAAEPGPDPSEVDGLLRQGDMLRA 56
++ +A AA+ EP P+P E+ G + + L+A
Sbjct: 125 KKRDALAASHEPPPEPEEITGPVDEETFLKA 155
>gi|49619228 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
G [Homo sapiens]
Length = 162
Score = 26.9 bits (58), Expect = 6.8
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 7 SSRFRRVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHAALRNSPV 66
S R +RV E E + + Q+E A+E E+D L + + L+ F + SPV
Sbjct: 67 SCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFARTVARSPV 126
>gi|45505137 podocan [Homo sapiens]
Length = 661
Score = 26.9 bits (58), Expect = 6.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 19 DENKFVDEQEEAAAAAAEPGPDPSEV 44
+EN+F +E+ + EPGP P+ V
Sbjct: 89 EENEFAEEEPVLVLSPEEPGPGPAAV 114
>gi|119395754 keratin 5 [Homo sapiens]
Length = 590
Score = 26.6 bits (57), Expect = 8.9
Identities = 20/100 (20%), Positives = 42/100 (42%)
Query: 12 RVDIDEFDENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHAALRNSPVNTKNQ 71
R + + + + K+ + Q+ A + E+ + R LRA ++ N +N
Sbjct: 354 RTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNA 413
Query: 72 AVKERAQGVVLKVLTNFKSSEIEQAVQSLDRNGVDLLMKY 111
+G + K +E+E+A+Q ++ LL +Y
Sbjct: 414 IADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREY 453
>gi|148237270 hypermethylated in cancer 1 isoform 2 [Homo sapiens]
Length = 733
Score = 26.6 bits (57), Expect = 8.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 12 RVDIDEFDENKFVDEQEEAAAAAAEPGPDPS 42
R+ +D + D E AAAAA PG +PS
Sbjct: 95 RLVLDFIYTGRLADGAEAAAAAAVAPGAEPS 125
>gi|61676186 hypermethylated in cancer 1 isoform 1 [Homo sapiens]
Length = 714
Score = 26.6 bits (57), Expect = 8.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 12 RVDIDEFDENKFVDEQEEAAAAAAEPGPDPS 42
R+ +D + D E AAAAA PG +PS
Sbjct: 76 RLVLDFIYTGRLADGAEAAAAAAVAPGAEPS 106
>gi|215490093 ATPase, (Na+)/K+ transporting, beta 4 polypeptide
isoform A [Homo sapiens]
Length = 357
Score = 26.6 bits (57), Expect = 8.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 7 SSRFRRVDIDEFDENKFVDEQEEAAAAA 34
S R+R D DE ++N DE+EEA A
Sbjct: 16 SYRYRLDDPDEANQNYLADEEEEAEEEA 43
>gi|6912256 ATPase, (Na+)/K+ transporting, beta 4 polypeptide
isoform B [Homo sapiens]
Length = 353
Score = 26.6 bits (57), Expect = 8.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 7 SSRFRRVDIDEFDENKFVDEQEEAAAAA 34
S R+R D DE ++N DE+EEA A
Sbjct: 16 SYRYRLDDPDEANQNYLADEEEEAEEEA 43
>gi|14150035 pleckstrin and Sec7 domain containing 2 [Homo
sapiens]
Length = 771
Score = 26.6 bits (57), Expect = 8.9
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 8/58 (13%)
Query: 19 DENKFVDEQEEAAAAAAEPGPDPSEVDGLLRQGDMLRAFHAAL-------RNSPVNTK 69
+E+K + E A +PGP+P E G +R G +++L R +P +T+
Sbjct: 2 EEDKLLSAVPEEGDATRDPGPEPEEEPG-VRNGMASEGLNSSLCSPGHERRGTPADTE 58
>gi|50811889 centrosomal protein 192kDa [Homo sapiens]
Length = 1941
Score = 26.6 bits (57), Expect = 8.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 41 PSEVDGLLRQGDMLRAFHAALRNSPVN 67
P V G+ GD+ RA +AA R SP++
Sbjct: 1717 PPYVKGVDESGDVFRATYAAFRCSPIS 1743
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,166,086
Number of Sequences: 37866
Number of extensions: 201603
Number of successful extensions: 704
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 28
length of query: 153
length of database: 18,247,518
effective HSP length: 93
effective length of query: 60
effective length of database: 14,725,980
effective search space: 883558800
effective search space used: 883558800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.