Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HIC1 Sequence: fasta or formatted (733aa) NCBI GI: 148237270
Description:

hypermethylated in cancer 1 isoform 2

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [714aa] hypermethylated in cancer 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.6         92           6
 C cysteine            2.9         21           1
 D aspartate           4.4         32           2
 E glutamate           6.4         47           4
 F phenylalanine       2.6         19           1
 G glycine            12.6         92           8
 H histidine           3.1         23           1
 I isoleucine          1.5         11           2
 K lysine              4.4         32           2
 L leucine            10.5         77           3
 M methionine          1.5         11           1
 N asparagine          1.4         10           2
 P proline            11.3         83           5
 Q glutamine           2.7         20           2
 R arginine            5.5         40           2
 S serine              6.4         47           3
 T threonine           3.1         23           2
 V valine              3.8         28           2
 W tryptophan          0.3          2           1
 Y tyrosine            3.1         23           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypermethylated in cancer 1 isoform 2 
HIC1                  0.975   hypermethylated in cancer 1 isoform 1 
HIC2                  0.299   hypermethylated in cancer 2 
ZNF234                0.074   zinc finger protein 234 
ZNF234                0.074   zinc finger protein 234 
ZNF133                0.073   zinc finger protein 133 
ZNF133                0.073   zinc finger protein 133 
ZNF358                0.073   zinc finger protein 358 
ZNF391                0.072   zinc finger protein 391 
ZNF79                 0.071   zinc finger protein 79 
ZNF572                0.071   zinc finger protein 572 
ZNF778                0.071   zinc finger protein 778 
ZNF568                0.070   zinc finger protein 568 
ZNF551                0.070   zinc finger protein 551 
MZF1                  0.070   zinc finger protein 42 isoform 2 
MZF1                  0.070   zinc finger protein 42 isoform 1 
ZNF180                0.070   zinc finger protein 180 
ZNF569                0.070   zinc finger protein 569 
ZNF354B               0.070   zinc finger protein 354B 
ZFP2                  0.069   zinc finger protein 2 homolog 
ZNF135                0.069   zinc finger protein 135 
ZNF3                  0.069   zinc finger protein 3 isoform 2 
ZNF93                 0.069   zinc finger protein 93 
LOC100287515          0.069   PREDICTED: hypothetical protein XP_002343928 
ZNF429                0.069   zinc finger protein 429 
ZNF626                0.069   zinc finger protein 626 isoform 1 
ZNF26                 0.069   zinc finger protein 26 
ZNF629                0.069   zinc finger protein 629 
ZNF587                0.069   zinc finger protein 587 
ZNF613                0.069   zinc finger protein 613 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press