Guide to the Human Genome
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Name: PSD2 Sequence: fasta or formatted (771aa) NCBI GI: 14150035
Description:

pleckstrin and Sec7 domain containing 2

Referenced in:

ADP-Ribosylation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         58           2
 C cysteine            1.6         12           1
 D aspartate           8.3         64           3
 E glutamate           8.4         65           3
 F phenylalanine       3.2         25           2
 G glycine             8.4         65           2
 H histidine           2.6         20           2
 I isoleucine          2.6         20           1
 K lysine              5.6         43           2
 L leucine            12.5         96           2
 M methionine          1.7         13           1
 N asparagine          3.0         23           2
 P proline             5.3         41           1
 Q glutamine           2.7         21           2
 R arginine            6.4         49           2
 S serine              9.1         70           3
 T threonine           5.4         42           2
 V valine              3.1         24           1
 W tryptophan          0.6          5           1
 Y tyrosine            1.9         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pleckstrin and Sec7 domain containing 2 
PSD                   0.395   pleckstrin and Sec7 domain containing 
PSD3                  0.393   ADP-ribosylation factor guanine nucleotide factor 6...
PSD3                  0.376   ADP-ribosylation factor guanine nucleotide factor 6 ...
PSD4                  0.267   pleckstrin and Sec7 domain containing 4 
CYTH3                 0.057   cytohesin 3 
CYTH1                 0.057   cytohesin 1 isoform 2 
CYTH1                 0.057   cytohesin 1 isoform 1 
CYTH2                 0.054   cytohesin 2 isoform 2 
CYTH2                 0.054   cytohesin 2 isoform 1 
CYTH4                 0.049   cytohesin 4 
GBF1                  0.049   golgi-specific brefeldin A resistant guanine nucleoti...
ARFGEF1               0.044   brefeldin A-inhibited guanine nucleotide-exchange pr...
IQSEC3                0.043   IQ motif and Sec7 domain 3 
IQSEC1                0.043   IQ motif and Sec7 domain 1 isoform a 
IQSEC1                0.043   IQ motif and Sec7 domain 1 isoform b 
IQSEC2                0.041   IQ motif and Sec7 domain 2 isoform 2 
IQSEC2                0.041   IQ motif and Sec7 domain 2 isoform1 
ARFGEF2               0.039   ADP-ribosylation factor guanine nucleotide-exchange...
SPTBN4                0.023   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
FBXO8                 0.021   F-box only protein 8 
SPTB                  0.021   spectrin beta isoform a 
ARHGAP23              0.020   Rho GTPase activating protein 23 
SPTBN2                0.020   spectrin, beta, non-erythrocytic 2 
ARHGAP21              0.019   Rho GTPase activating protein 21 
TIAM2                 0.016   T-cell lymphoma invasion and metastasis 2 isoform a ...
SPTBN1                0.014   spectrin, beta, non-erythrocytic 1 isoform 1 
TIAM1                 0.012   T-cell lymphoma invasion and metastasis 1 
PLEKHA2               0.010   pleckstrin homology domain containing, family A (ph...
INF2                  0.009   inverted formin 2 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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