Guide to the Human Genome
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Name: SIRT3 Sequence: fasta or formatted (399aa) NCBI GI: 6912660
Description:

sirtuin 3 isoform a

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
Mitochondria

Other entries for this name:
alt prot [257aa] sirtuin 3 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         32           4
 C cysteine            1.8          7           1
 D aspartate           5.3         21           2
 E glutamate           5.0         20           2
 F phenylalanine       5.5         22           3
 G glycine            10.0         40           3
 H histidine           2.0          8           1
 I isoleucine          3.0         12           1
 K lysine              2.8         11           1
 L leucine            11.0         44           3
 M methionine          1.3          5           1
 N asparagine          1.5          6           1
 P proline             8.5         34           2
 Q glutamine           3.0         12           2
 R arginine            9.0         36           2
 S serine              7.0         28           2
 T threonine           3.0         12           1
 V valine              9.3         37           3
 W tryptophan          1.3          5           1
 Y tyrosine            1.8          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sirtuin 3 isoform a 
SIRT3                 0.640   sirtuin 3 isoform b 
SIRT2                 0.335   sirtuin 2 isoform 1 
SIRT2                 0.332   sirtuin 2 isoform 2 
SIRT1                 0.215   sirtuin 1 isoform a 
SIRT1                 0.165   sirtuin 1 isoform b 
SIRT4                 0.076   sirtuin 4 
SIRT5                 0.075   sirtuin 5 isoform 2 
SIRT5                 0.075   sirtuin 5 isoform 1 
SIRT6                 0.075   sirtuin 6 
SIRT7                 0.052   sirtuin 7 
LOC100290783          0.010   PREDICTED: hypothetical protein XP_002347614 
LOC100288864          0.010   PREDICTED: hypothetical protein XP_002343435 
JPH4                  0.010   junctophilin 4 
JPH4                  0.010   junctophilin 4 
CCDC61                0.009   coiled-coil domain containing 61 
LOC645321             0.008   PREDICTED: hypothetical protein 
LOC645321             0.008   PREDICTED: hypothetical protein 
LOC728650             0.008   PREDICTED: hypothetical protein 
LOC100128074          0.008   PREDICTED: hypothetical protein 
COL5A1                0.008   alpha 1 type V collagen preproprotein 
PRAM1                 0.008   PML-RARA regulated adaptor molecule 1 
DMRT3                 0.008   doublesex and mab-3 related transcription factor 3 [...
KLHL17                0.008   kelch-like 17 
SMAD6                 0.006   SMAD family member 6 isoform 1 
COL16A1               0.006   alpha 1 type XVI collagen precursor 
EVX1                  0.006   even-skipped homeobox 1 
GLB1                  0.006   galactosidase, beta 1 isoform b 
GLB1                  0.006   galactosidase, beta 1 isoform a preproprotein [Homo...
LOC100131733          0.006   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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