Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100128074 Sequence: fasta or formatted (381aa) NCBI GI: 169202233
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {365aa} PREDICTED: hypothetical protein
alt prot {350aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         41           3
 C cysteine            2.6         10           1
 D aspartate           2.4          9           1
 E glutamate           5.8         22           3
 F phenylalanine       0.5          2           1
 G glycine            11.5         44           2
 H histidine           5.8         22           1
 I isoleucine          1.3          5           1
 K lysine              1.3          5           1
 L leucine             9.7         37           4
 M methionine          0.5          2           1
 N asparagine          0.8          3           1
 P proline            13.6         52           4
 Q glutamine           8.1         31           3
 R arginine            9.4         36           2
 S serine              4.5         17           1
 T threonine           2.9         11           3
 V valine              7.3         28           2
 W tryptophan          0.5          2           1
 Y tyrosine            0.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128074          0.897   PREDICTED: hypothetical protein 
LOC100128074          0.860   PREDICTED: hypothetical protein 
PRB2                  0.031   proline-rich protein BstNI subfamily 2 
KIAA0754              0.031   hypothetical protein LOC643314 
LOC100131102          0.030   PREDICTED: hypothetical protein 
LOC100131102          0.030   PREDICTED: hypothetical protein 
SYNJ1                 0.030   synaptojanin 1 isoform d 
PRG4                  0.028   proteoglycan 4 isoform D 
PRG4                  0.028   proteoglycan 4 isoform C 
PRG4                  0.028   proteoglycan 4 isoform B 
PRG4                  0.028   proteoglycan 4 isoform A 
LOC100130360          0.028   PREDICTED: hypothetical protein 
LOC100290263          0.028   PREDICTED: hypothetical protein XP_002347916 
PRB1                  0.028   proline-rich protein BstNI subfamily 1 isoform 1 pre...
LOC645602             0.028   PREDICTED: hypothetical protein 
LOC645602             0.028   PREDICTED: hypothetical protein 
LOC645602             0.028   PREDICTED: hypothetical protein 
SRRM1                 0.028   serine/arginine repetitive matrix 1 
POU6F2                0.027   POU domain, class 6, transcription factor 2 
SYNJ1                 0.027   synaptojanin 1 isoform c 
PDCD6IP               0.027   programmed cell death 6 interacting protein isoform...
PDCD6IP               0.027   programmed cell death 6 interacting protein isoform ...
UBN2                  0.026   ubinuclein 2 
C9orf75               0.026   hypothetical protein LOC286262 isoform 2 
C2orf71               0.026   hypothetical protein LOC388939 
C9orf75               0.026   hypothetical protein LOC286262 isoform 1 
SYNJ1                 0.026   synaptojanin 1 isoform a 
SYNJ1                 0.026   synaptojanin 1 isoform b 
BAI1                  0.026   brain-specific angiogenesis inhibitor 1 precursor [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press