Guide to the Human Genome
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Name: CD3EAP Sequence: fasta or formatted (510aa) NCBI GI: 6912246
Description:

CD3E antigen, epsilon polypeptide associated protein

Referenced in:

T cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         42           2
 C cysteine            1.0          5           1
 D aspartate           2.2         11           2
 E glutamate          11.8         60           2
 F phenylalanine       1.8          9           1
 G glycine             8.0         41           3
 H histidine           0.8          4           1
 I isoleucine          1.6          8           1
 K lysine             10.8         55           7
 L leucine             6.9         35           2
 M methionine          2.5         13           2
 N asparagine          1.6          8           1
 P proline            13.9         71           3
 Q glutamine           7.1         36           5
 R arginine            4.1         21           1
 S serine              5.3         27           2
 T threonine           7.3         37           2
 V valine              4.9         25           2
 W tryptophan          0.2          1           1
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CD3E antigen, epsilon polypeptide associated protein ... 
MDC1                  0.047   mediator of DNA-damage checkpoint 1 
NEFH                  0.040   neurofilament, heavy polypeptide 200kDa 
RP1L1                 0.037   retinitis pigmentosa 1-like 1 
TTN                   0.037   titin isoform N2-A 
PCLO                  0.036   piccolo isoform 2 
PCLO                  0.036   piccolo isoform 1 
AEBP1                 0.035   adipocyte enhancer binding protein 1 precursor [Homo...
PRG4                  0.034   proteoglycan 4 isoform D 
PRG4                  0.034   proteoglycan 4 isoform C 
PRG4                  0.034   proteoglycan 4 isoform B 
PRG4                  0.034   proteoglycan 4 isoform A 
BASP1                 0.032   brain abundant, membrane attached signal protein 1 [...
EIF4G1                0.032   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.032   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.032   eukaryotic translation initiation factor 4 gamma, 1 ...
FLJ22184              0.031   PREDICTED: hypothetical protein FLJ22184 
SMTNL1                0.028   smoothelin-like 1 
MAP6                  0.027   microtubule-associated protein 6 isoform 1 
TRDN                  0.027   triadin 
REST                  0.027   RE1-silencing transcription factor 
NACA                  0.027   nascent polypeptide-associated complex alpha subuni...
NOLC1                 0.025   nucleolar and coiled-body phosphoprotein 1 
PDS5B                 0.025   PDS5, regulator of cohesion maintenance, homolog B [H...
SETD1B                0.025   SET domain containing 1B 
SRRM2                 0.025   splicing coactivator subunit SRm300 
MLL                   0.024   myeloid/lymphoid or mixed-lineage leukemia protein [...
NCOR2                 0.024   nuclear receptor co-repressor 2 isoform 2 
SPEN                  0.024   spen homolog, transcriptional regulator 
EIF4G1                0.024   eukaryotic translation initiation factor 4 gamma, 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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