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Search of human proteins with 68303635
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|68303635 mutS homolog 3 [Homo sapiens]
(1137 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|68303635 mutS homolog 3 [Homo sapiens] 2235 0.0
gi|4504191 mutS homolog 6 [Homo sapiens] 290 4e-78
gi|36949366 mutS homolog 4 [Homo sapiens] 245 2e-64
gi|4557761 mutS homolog 2 [Homo sapiens] 243 1e-63
gi|4505253 mutS homolog 5 isoform c [Homo sapiens] 181 4e-45
gi|26638662 mutS homolog 5 isoform a [Homo sapiens] 181 4e-45
gi|26638666 mutS homolog 5 isoform c [Homo sapiens] 181 4e-45
gi|26638664 mutS homolog 5 isoform b [Homo sapiens] 176 9e-44
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 41 0.007
gi|4507691 transformation/transcription domain-associated protei... 39 0.021
gi|19111150 angiomotin isoform 2 [Homo sapiens] 39 0.021
gi|166064029 angiomotin isoform 1 [Homo sapiens] 39 0.021
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 39 0.028
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 39 0.028
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 39 0.028
gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens] 39 0.028
gi|18079216 CASK interacting protein 1 [Homo sapiens] 38 0.048
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 38 0.048
gi|210032509 hypothetical protein LOC100130302 [Homo sapiens] 38 0.048
gi|30089916 phosphofurin acidic cluster sorting protein 1 [Homo ... 38 0.048
gi|155369221 potassium channel tetramerisation domain containing... 38 0.048
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 37 0.082
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 37 0.11
gi|226958575 RAS protein activator like 2 isoform 2 [Homo sapiens] 37 0.14
gi|4758808 RAS protein activator like 2 isoform 1 [Homo sapiens] 37 0.14
gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo ... 37 0.14
gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo ... 37 0.14
gi|62422554 p21-activated kinase 4 isoform 1 [Homo sapiens] 37 0.14
gi|62422561 p21-activated kinase 4 isoform 2 [Homo sapiens] 37 0.14
gi|62422563 p21-activated kinase 4 isoform 2 [Homo sapiens] 37 0.14
>gi|68303635 mutS homolog 3 [Homo sapiens]
Length = 1137
Score = 2235 bits (5792), Expect = 0.0
Identities = 1137/1137 (100%), Positives = 1137/1137 (100%)
Query: 1 MSRRKPASGGLAASSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAA 60
MSRRKPASGGLAASSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAA
Sbjct: 1 MSRRKPASGGLAASSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAA 60
Query: 61 AAPPAPPAPAFPPQLPPHIATEIDRRKKRPLENDGPVKKKVKKVQQKEGGSDLGMSGNSE 120
AAPPAPPAPAFPPQLPPHIATEIDRRKKRPLENDGPVKKKVKKVQQKEGGSDLGMSGNSE
Sbjct: 61 AAPPAPPAPAFPPQLPPHIATEIDRRKKRPLENDGPVKKKVKKVQQKEGGSDLGMSGNSE 120
Query: 121 PKKCLRTRNVSKSLEKLKEFCCDSALPQSRVQTESLQERFAVLPKCTDFDDISLLHAKNA 180
PKKCLRTRNVSKSLEKLKEFCCDSALPQSRVQTESLQERFAVLPKCTDFDDISLLHAKNA
Sbjct: 121 PKKCLRTRNVSKSLEKLKEFCCDSALPQSRVQTESLQERFAVLPKCTDFDDISLLHAKNA 180
Query: 181 VSSEDSKRQINQKDTTLFDLSQFGSSNTSHENLQKTASKSANKRSKSIYTPLELQYIEMK 240
VSSEDSKRQINQKDTTLFDLSQFGSSNTSHENLQKTASKSANKRSKSIYTPLELQYIEMK
Sbjct: 181 VSSEDSKRQINQKDTTLFDLSQFGSSNTSHENLQKTASKSANKRSKSIYTPLELQYIEMK 240
Query: 241 QQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHVRRLVAK 300
QQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHVRRLVAK
Sbjct: 241 QQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHVRRLVAK 300
Query: 301 GYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIM 360
GYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIM
Sbjct: 301 GYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIM 360
Query: 361 TDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSS 420
TDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSS
Sbjct: 361 TDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSS 420
Query: 421 LQPVELLLPSALSEQTEALIHRATSVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDT 480
LQPVELLLPSALSEQTEALIHRATSVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDT
Sbjct: 421 LQPVELLLPSALSEQTEALIHRATSVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDT 480
Query: 481 VDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMTINGT 540
VDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMTINGT
Sbjct: 481 VDIKGSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMTINGT 540
Query: 541 TLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEV 600
TLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEV
Sbjct: 541 TLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEV 600
Query: 601 LHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVN 660
LHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVN
Sbjct: 601 LHSESSVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVN 660
Query: 661 SHIQSDLLRTVILEIPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQ 720
SHIQSDLLRTVILEIPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQ
Sbjct: 661 SHIQSDLLRTVILEIPELLSPVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQ 720
Query: 721 GVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRF 780
GVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRF
Sbjct: 721 GVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRF 780
Query: 781 HSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKV 840
HSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKV
Sbjct: 781 HSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKV 840
Query: 841 AKQGDYCRPTVQEERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMG 900
AKQGDYCRPTVQEERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMG
Sbjct: 841 AKQGDYCRPTVQEERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMG 900
Query: 901 GKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTA 960
GKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTA
Sbjct: 901 GKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTA 960
Query: 961 EIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 1020
EIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN
Sbjct: 961 EIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 1020
Query: 1021 YSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPG 1080
YSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPG
Sbjct: 1021 YSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPG 1080
Query: 1081 EILKKAAHKSKELEGLINTKRKRLKYFAKLWTMHNAQDLQKWTEEFNMEETQTSLLH 1137
EILKKAAHKSKELEGLINTKRKRLKYFAKLWTMHNAQDLQKWTEEFNMEETQTSLLH
Sbjct: 1081 EILKKAAHKSKELEGLINTKRKRLKYFAKLWTMHNAQDLQKWTEEFNMEETQTSLLH 1137
>gi|4504191 mutS homolog 6 [Homo sapiens]
Length = 1360
Score = 290 bits (743), Expect = 4e-78
Identities = 260/965 (26%), Positives = 449/965 (46%), Gaps = 133/965 (13%)
Query: 230 TPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHR 289
TP ++ ++K Q+ D V+C + G Y + DA I EL + + N+ + P
Sbjct: 407 TPGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGVSELGLV-FMKGNWAHSGFPEIA 465
Query: 290 LFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFS-------RKLTALYTKSTLIGE 342
+ LV KGYKV V+QTET + + + S R++ + TK T
Sbjct: 466 FGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGT---- 521
Query: 343 DVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKGNIFIGIVGVQPATGEVVF 402
+++ D + N + YLL + E +E+ + G+ V + G+
Sbjct: 522 QTYSVLEGDPSENYSK--------YLLSLKEKEEDSSGHTRA---YGVCFVDTSLGKFFI 570
Query: 403 DSFQDSASRSELETRMSSLQPVELLLPSA-LSEQTEALIHRATSVSVQDDRIRVERMDNI 461
F D S T ++ PV++L LS++T+ ++ + S S+Q+ I +
Sbjct: 571 GQFSDDRHCSRFRTLVAHYPPVQVLFEKGNLSKETKTILKSSLSCSLQEGLIPGSQ---- 626
Query: 462 YFEYSHAFQAVTE---FYAK--DTVDIKGSQIISGIVNLEKPV-----------ICSLAA 505
+++ S + + E F K D + + Q++ G+ + + + +L
Sbjct: 627 FWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGG 686
Query: 506 IIKYLKEFNLEKMLSKPENFKQ-----------------LSSKMEFMTINGTTLRNLEIL 548
+ YLK+ +++ L NF++ + + M ++ TL NLEI
Sbjct: 687 CVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIF 746
Query: 549 QNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVF 608
N T+ T+G+LL +D T FG+R LK+W+ PL IN RLDA+ +++ +
Sbjct: 747 LNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKI- 805
Query: 609 GQIENHLRKLPDIERGLCSIYH-------KKCSTQEFFLIVKTLYHLKS----------- 650
++ L+KLPD+ER L I++ + + +T Y K
Sbjct: 806 SEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGF 865
Query: 651 ----EFQAIIPAVNSHIQSDLLRTVIL--------EIPELLSPVEHYLKILN-EQAAKVG 697
+ I+ V +S +L+ VI P+L + + + E+A K G
Sbjct: 866 KVMCKIIGIMEEVADGFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTG 925
Query: 698 DKTELFKDLSDFP--LIKKRKDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMIE 755
T SD+ L R++E Q +++ +L++ R + + Y + + +E
Sbjct: 926 LITPKAGFDSDYDQALADIRENE-QSLLE----YLEKQRNRIGCRTIVYWGIGRNRYQLE 980
Query: 756 I-KNSAVSCIPTDWVKVGSTKAVSRFHSPFIVENYRHL---NQLREQLVLDCSAEWLDFL 811
I +N +P ++ + K R+ + I + +L + R+ + DC
Sbjct: 981 IPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRR---LF 1037
Query: 812 EKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQGD--YCRPTVQEERK----IVIKNGRHP 865
F ++Y AV +A +D + LA ++ GD CRP + + +K RHP
Sbjct: 1038 YNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHP 1097
Query: 866 VID-VLLGEQDQYVPNNTDLSEDSER-------VMIITGPNMGGKSSYIKQVALITIMAQ 917
I G D ++PN+ + + E +++TGPNMGGKS+ ++Q L+ +MAQ
Sbjct: 1098 CITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQ 1155
Query: 918 IGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDEL 977
+G YVPAE + +D +FTR+GA+D I G STF EL++TA I+ AT+ SLV++DEL
Sbjct: 1156 MGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDEL 1215
Query: 978 GRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE-LEKNYSHQVGNYHMGFLVSE 1036
GRGT+T DG AIA A ++ +K TLF THY + E +N + ++G HM +V E
Sbjct: 1216 GRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLG--HMACMV-E 1272
Query: 1037 DESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGL 1096
+E + DP + +TFLY+ +G +SYG N A+LA++P E+++K K++E E +
Sbjct: 1273 NECE-DPS-----QETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKM 1326
Query: 1097 INTKR 1101
+ R
Sbjct: 1327 NQSLR 1331
>gi|36949366 mutS homolog 4 [Homo sapiens]
Length = 936
Score = 245 bits (625), Expect = 2e-64
Identities = 195/732 (26%), Positives = 365/732 (49%), Gaps = 74/732 (10%)
Query: 388 IGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPS---ALSEQTEALIHRAT 444
IG+ + +++ F D+ + +++ T++ L P+E+++ + A+ T+ T
Sbjct: 171 IGMASIDLKNPQIILSQFADNTTYAKVITKLKILSPLEIIMSNTACAVGNSTKLF----T 226
Query: 445 SVSVQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQIISGIVNLEKPVIC--S 502
++ + + YF + + + + + + ++ ++ C +
Sbjct: 227 LITENFKNVNFTTIQRKYFNETKGLEYIEQLCIAEFSTV--------LMEVQSKYYCLAA 278
Query: 503 LAAIIKYLKEFNLEKMLSKPENFKQ-LSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLL 561
+AA++KY+ EF ++ + P++ K + I+ ++ +NLE+L N D + +L
Sbjct: 279 VAALLKYV-EF-IQNSVYAPKSLKICFQGSEQTAMIDSSSAQNLELLINNQDYRNNHTLF 336
Query: 562 WVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPDI 621
VL++TKT G R+L+ + +PL+ + IN RLD V E+L E FG +++ + + D
Sbjct: 337 GVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQDEELFFG-LQSVISRFLDT 395
Query: 622 ERGLCSIYH--KKCSTQEFFLIVKTLYHLKSEFQAIIPA--VNSHIQSDLLRT------- 670
E+ L + K+ + + L +LK + + P + + LLR
Sbjct: 396 EQLLSVLVQIPKQDTVNAAESKITNLIYLKHTLELVDPLKIAMKNCNTPLLRAYYGSLED 455
Query: 671 ----VILE-IPELLSPVEHYLK-ILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVID 724
+ILE I +++ Y+K LN + K + ++++F I +R ++D
Sbjct: 456 KRFGIILEKIKTVINDDARYMKGCLNMRTQKC---YAVRSNINEFLDIARRT--YTEIVD 510
Query: 725 EIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSC----IPTDWVKVGSTKAVSRF 780
+I + ++ + P + S + F I++ ++ +P++++K+ K F
Sbjct: 511 DIAGMISQLGEKYSLPLRTSFS-SARGFFIQMTTDCIALPSDQLPSEFIKISKVKNSYSF 569
Query: 781 HSPFIVE-NYRHLNQLRE----QLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIF 835
S +++ N R LRE ++ C L + EH H L K ++ +D +
Sbjct: 570 TSADLIKMNERCQESLREIYHMTYMIVCK-----LLSEIYEHIHCLYKLSDTVSMLDMLL 624
Query: 836 SLAKVAKQGDYCRPTVQEERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIIT 895
S A DY RP + + IK G HP+++ + E+ + NNT ++E S +IIT
Sbjct: 625 SFAHACTLSDYVRPEFTDT--LAIKQGWHPILEKISAEKP--IANNTYVTEGSN-FLIIT 679
Query: 896 GPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEE 955
GPNM GKS+Y+KQ+AL IMAQIGSYVPAE ++ I IFTR+ D+I STFM+E
Sbjct: 680 GPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAKQIFTRISTDDDIETNSSTFMKE 739
Query: 956 LTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC 1015
+ + A I+ A +SL+++DELGRGT+T +GI I YA EY + +K+ TLF TH+ +C
Sbjct: 740 MKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEYLL-SLKAFTLFATHFLELC 798
Query: 1016 ELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIA-ARSYGLNVAK 1074
++ Y + V N H ++ S+ + + + Y++++G+ ++YGL A+
Sbjct: 799 HIDALYPN-VENMHFEVQHVKNTSR--------NKEAILYTYKLSKGLTEEKNYGLKAAE 849
Query: 1075 LADVPGEILKKA 1086
++ +P I+ A
Sbjct: 850 VSSLPPSIVLDA 861
>gi|4557761 mutS homolog 2 [Homo sapiens]
Length = 934
Score = 243 bits (619), Expect = 1e-63
Identities = 201/736 (27%), Positives = 347/736 (47%), Gaps = 73/736 (9%)
Query: 388 IGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPSALSEQTEALIHRATSVS 447
+G+ V ++ F D+ S LE + + P E +LP +T + + +
Sbjct: 161 VGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGG---ETAGDMGKLRQI- 216
Query: 448 VQDDRIRVERMDNIYFEYSHAFQAVTEFYAKDTVDIKGSQIISGIV-NLEKPV-ICSLAA 505
+Q I + F +Q + KG Q+ S ++ +E V + SL+A
Sbjct: 217 IQRGGILITERKKADFSTKDIYQDLNRLLKGK----KGEQMNSAVLPEMENQVAVSSLSA 272
Query: 506 IIKYLKEFNLEKMLSKPENFKQLSSKM----EFMTINGTTLRNLEILQNQTDMKTKG-SL 560
+IK+L+ +LS NF Q ++M ++ +R L + Q + T SL
Sbjct: 273 VIKFLE------LLSDDSNFGQFELTTFDFSQYMKLDIAAVRALNLFQGSVEDTTGSQSL 326
Query: 561 LWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIENHLRKLPD 620
+L+ KT G+R + +W+ QPL+ I RL+ V + E+ LR+ PD
Sbjct: 327 AALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELRQTLQEDLLRRFPD 386
Query: 621 IERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQSDLLRTVILEIPELLS 680
+ R + + Q+ + + + + L + QA+ H Q LL + + +L S
Sbjct: 387 LNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEKHEGKH-QKLLLAVFVTPLTDLRS 445
Query: 681 PVEHYLKILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGVIDEIRMHLQEI------- 733
+ +++ D+ E + L P E++ +++++ +Q
Sbjct: 446 DFSKFQEMIETTLDM--DQVENHEFLVK-PSFDPNLSELREIMNDLEKKMQSTLISAARD 502
Query: 734 ------RKILKNPSAQY-----VTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHS 782
++I + SAQ+ VT ++ + KN + I + VK ++K S
Sbjct: 503 LGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEE 562
Query: 783 PFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAK 842
+N + ++ +V E ++ + E +L LA +D + S A V+
Sbjct: 563 --YTKNKTEYEEAQDAIV----KEIVNISSGYVEPMQTLNDV---LAQLDAVVSFAHVSN 613
Query: 843 QGD--YCRPTVQE--ERKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPN 898
Y RP + E + +I++K RH ++V ++ ++PN+ +D + IITGPN
Sbjct: 614 GAPVPYVRPAILEKGQGRIILKASRHACVEVQ--DEIAFIPNDVYFEKDKQMFHIITGPN 671
Query: 899 MGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTD 958
MGGKS+YI+Q +I +MAQIG +VP E A + IVD I R+GA D+ KG STFM E+ +
Sbjct: 672 MGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLE 731
Query: 959 TAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELE 1018
TA I+R AT SL+I+DELGRGTST+DG +A+A EY + + +F TH+ + L
Sbjct: 732 TASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTAL- 790
Query: 1019 KNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADV 1078
N V N H+ L +E+ +T LYQ+ +G+ +S+G++VA+LA+
Sbjct: 791 ANQIPTVNNLHVTALTTEET--------------LTMLYQVKKGVCDQSFGIHVAELANF 836
Query: 1079 PGEILKKAAHKSKELE 1094
P +++ A K+ ELE
Sbjct: 837 PKHVIECAKQKALELE 852
>gi|4505253 mutS homolog 5 isoform c [Homo sapiens]
Length = 834
Score = 181 bits (459), Expect = 4e-45
Identities = 166/604 (27%), Positives = 291/604 (48%), Gaps = 65/604 (10%)
Query: 559 SLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIEN----H 614
SL +L+ +G + L+ W T+P L E+++RLD + L ++ Q+ + H
Sbjct: 253 SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGH 312
Query: 615 LRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQS-DLLRTVIL 673
++ +P I + + + H K S ++ ++ KT+Y + A S QS L R +
Sbjct: 313 IKNVPLILKRM-KLSHTKVS--DWQVLYKTVYSALG----LRDACRSLPQSIQLFRDIAQ 365
Query: 674 EIPELLSPVEHYL-KILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGV----IDEIRM 728
E + L + + K+++ + + ++ + ++ P I ++K + G+ + R
Sbjct: 366 EFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNID--PEIDEKKRRLMGLPSFLTEVARK 423
Query: 729 HLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVEN 788
L+ + + + S Y+ + G F++ I +D+ ++ F+ E
Sbjct: 424 ELENLDSRIPSCSVIYIPLIG--FLLSIPRLPSMVEASDF-------EINGLDFMFLSEE 474
Query: 789 YRHLNQLREQLV------LDCSAEWLDFLEKFSEHYHSLCKA-----VHHLAT-VDCIFS 836
H R + + L C + L + L +A V LA+ +D + +
Sbjct: 475 KLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLA 534
Query: 837 LAKVAKQGDYCRPTVQEE-RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIIT 895
LA A+ Y RP + + I+NGRHP++++ +VPN+T+ D RV +IT
Sbjct: 535 LASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCART---FVPNSTECGGDKGRVKVIT 591
Query: 896 GPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEE 955
GPN GKS Y+KQV LIT MA +GS+VPAEEA IG VD IFTR+ + ++I G STFM +
Sbjct: 592 GPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMID 651
Query: 956 LTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFI-RDVKSLTLFV-THYPP 1013
L A+ + AT+QSLV++DE G+GT+T DG+A+ A L +++ R +FV T++
Sbjct: 652 LNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLS 711
Query: 1014 VCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVA 1073
+ +L+ + Y + ED + L F YQ+ G+A S+ + A
Sbjct: 712 LVQLQLLPQGPLVQY-LTMETCEDGNDL------------VFFYQVCEGVAKASHASHTA 758
Query: 1074 KLADVPGEILKKAAHKSKELEGLINTKR--KRLKYFAKLWTMHNAQDLQKWTEEFNMEET 1131
A +P +++ + KE+ LI + + K +K K M N Q L + ++E+
Sbjct: 759 AQAGLPDKLVA----RGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDP 814
Query: 1132 QTSL 1135
L
Sbjct: 815 NLDL 818
>gi|26638662 mutS homolog 5 isoform a [Homo sapiens]
Length = 851
Score = 181 bits (459), Expect = 4e-45
Identities = 166/604 (27%), Positives = 291/604 (48%), Gaps = 65/604 (10%)
Query: 559 SLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIEN----H 614
SL +L+ +G + L+ W T+P L E+++RLD + L ++ Q+ + H
Sbjct: 270 SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGH 329
Query: 615 LRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQS-DLLRTVIL 673
++ +P I + + + H K S ++ ++ KT+Y + A S QS L R +
Sbjct: 330 IKNVPLILKRM-KLSHTKVS--DWQVLYKTVYSALG----LRDACRSLPQSIQLFRDIAQ 382
Query: 674 EIPELLSPVEHYL-KILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGV----IDEIRM 728
E + L + + K+++ + + ++ + ++ P I ++K + G+ + R
Sbjct: 383 EFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNID--PEIDEKKRRLMGLPSFLTEVARK 440
Query: 729 HLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVEN 788
L+ + + + S Y+ + G F++ I +D+ ++ F+ E
Sbjct: 441 ELENLDSRIPSCSVIYIPLIG--FLLSIPRLPSMVEASDF-------EINGLDFMFLSEE 491
Query: 789 YRHLNQLREQLV------LDCSAEWLDFLEKFSEHYHSLCKA-----VHHLAT-VDCIFS 836
H R + + L C + L + L +A V LA+ +D + +
Sbjct: 492 KLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLA 551
Query: 837 LAKVAKQGDYCRPTVQEE-RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIIT 895
LA A+ Y RP + + I+NGRHP++++ +VPN+T+ D RV +IT
Sbjct: 552 LASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCART---FVPNSTECGGDKGRVKVIT 608
Query: 896 GPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEE 955
GPN GKS Y+KQV LIT MA +GS+VPAEEA IG VD IFTR+ + ++I G STFM +
Sbjct: 609 GPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMID 668
Query: 956 LTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFI-RDVKSLTLFV-THYPP 1013
L A+ + AT+QSLV++DE G+GT+T DG+A+ A L +++ R +FV T++
Sbjct: 669 LNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLS 728
Query: 1014 VCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVA 1073
+ +L+ + Y + ED + L F YQ+ G+A S+ + A
Sbjct: 729 LVQLQLLPQGPLVQY-LTMETCEDGNDL------------VFFYQVCEGVAKASHASHTA 775
Query: 1074 KLADVPGEILKKAAHKSKELEGLINTKR--KRLKYFAKLWTMHNAQDLQKWTEEFNMEET 1131
A +P +++ + KE+ LI + + K +K K M N Q L + ++E+
Sbjct: 776 AQAGLPDKLVA----RGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDP 831
Query: 1132 QTSL 1135
L
Sbjct: 832 NLDL 835
>gi|26638666 mutS homolog 5 isoform c [Homo sapiens]
Length = 834
Score = 181 bits (459), Expect = 4e-45
Identities = 166/604 (27%), Positives = 291/604 (48%), Gaps = 65/604 (10%)
Query: 559 SLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIEN----H 614
SL +L+ +G + L+ W T+P L E+++RLD + L ++ Q+ + H
Sbjct: 253 SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGH 312
Query: 615 LRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQS-DLLRTVIL 673
++ +P I + + + H K S ++ ++ KT+Y + A S QS L R +
Sbjct: 313 IKNVPLILKRM-KLSHTKVS--DWQVLYKTVYSALG----LRDACRSLPQSIQLFRDIAQ 365
Query: 674 EIPELLSPVEHYL-KILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGV----IDEIRM 728
E + L + + K+++ + + ++ + ++ P I ++K + G+ + R
Sbjct: 366 EFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNID--PEIDEKKRRLMGLPSFLTEVARK 423
Query: 729 HLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVEN 788
L+ + + + S Y+ + G F++ I +D+ ++ F+ E
Sbjct: 424 ELENLDSRIPSCSVIYIPLIG--FLLSIPRLPSMVEASDF-------EINGLDFMFLSEE 474
Query: 789 YRHLNQLREQLV------LDCSAEWLDFLEKFSEHYHSLCKA-----VHHLAT-VDCIFS 836
H R + + L C + L + L +A V LA+ +D + +
Sbjct: 475 KLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLA 534
Query: 837 LAKVAKQGDYCRPTVQEE-RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIIT 895
LA A+ Y RP + + I+NGRHP++++ +VPN+T+ D RV +IT
Sbjct: 535 LASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCART---FVPNSTECGGDKGRVKVIT 591
Query: 896 GPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEE 955
GPN GKS Y+KQV LIT MA +GS+VPAEEA IG VD IFTR+ + ++I G STFM +
Sbjct: 592 GPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMID 651
Query: 956 LTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFI-RDVKSLTLFV-THYPP 1013
L A+ + AT+QSLV++DE G+GT+T DG+A+ A L +++ R +FV T++
Sbjct: 652 LNQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLS 711
Query: 1014 VCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNVA 1073
+ +L+ + Y + ED + L F YQ+ G+A S+ + A
Sbjct: 712 LVQLQLLPQGPLVQY-LTMETCEDGNDL------------VFFYQVCEGVAKASHASHTA 758
Query: 1074 KLADVPGEILKKAAHKSKELEGLINTKR--KRLKYFAKLWTMHNAQDLQKWTEEFNMEET 1131
A +P +++ + KE+ LI + + K +K K M N Q L + ++E+
Sbjct: 759 AQAGLPDKLVA----RGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLEDP 814
Query: 1132 QTSL 1135
L
Sbjct: 815 NLDL 818
>gi|26638664 mutS homolog 5 isoform b [Homo sapiens]
Length = 835
Score = 176 bits (447), Expect = 9e-44
Identities = 166/605 (27%), Positives = 291/605 (48%), Gaps = 66/605 (10%)
Query: 559 SLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESSVFGQIEN----H 614
SL +L+ +G + L+ W T+P L E+++RLD + L ++ Q+ + H
Sbjct: 253 SLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGH 312
Query: 615 LRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAIIPAVNSHIQS-DLLRTVIL 673
++ +P I + + + H K S ++ ++ KT+Y + A S QS L R +
Sbjct: 313 IKNVPLILKRM-KLSHTKVS--DWQVLYKTVYSALG----LRDACRSLPQSIQLFRDIAQ 365
Query: 674 EIPELLSPVEHYL-KILNEQAAKVGDKTELFKDLSDFPLIKKRKDEIQGV----IDEIRM 728
E + L + + K+++ + + ++ + ++ P I ++K + G+ + R
Sbjct: 366 EFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNID--PEIDEKKRRLMGLPSFLTEVARK 423
Query: 729 HLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVEN 788
L+ + + + S Y+ + G F++ I +D+ ++ F+ E
Sbjct: 424 ELENLDSRIPSCSVIYIPLIG--FLLSIPRLPSMVEASDF-------EINGLDFMFLSEE 474
Query: 789 YRHLNQLREQLV------LDCSAEWLDFLEKFSEHYHSLCKA-----VHHLAT-VDCIFS 836
H R + + L C + L + L +A V LA+ +D + +
Sbjct: 475 KLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLDVLLA 534
Query: 837 LAKVAKQGDYCRPTVQEE-RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIIT 895
LA A+ Y RP + + I+NGRHP++++ +VPN+T+ D RV +IT
Sbjct: 535 LASAARDYGYSRPRYSPQVLGVRIQNGRHPLMELCART---FVPNSTECGGDKGRVKVIT 591
Query: 896 GPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEE 955
GPN GKS Y+KQV LIT MA +GS+VPAEEA IG VD IFTR+ + ++I G STFM +
Sbjct: 592 GPNSSGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMID 651
Query: 956 LT-DTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFI-RDVKSLTLFV-THYP 1012
L A+ + AT+QSLV++DE G+GT+T DG+A+ A L +++ R +FV T++
Sbjct: 652 LNQQVAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFL 711
Query: 1013 PVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLNV 1072
+ +L+ + Y + ED + L F YQ+ G+A S+ +
Sbjct: 712 SLVQLQLLPQGPLVQY-LTMETCEDGNDL------------VFFYQVCEGVAKASHASHT 758
Query: 1073 AKLADVPGEILKKAAHKSKELEGLINTKR--KRLKYFAKLWTMHNAQDLQKWTEEFNMEE 1130
A A +P +++ + KE+ LI + + K +K K M N Q L + ++E+
Sbjct: 759 AAQAGLPDKLVA----RGKEVSDLIRSGKPIKPVKDLLKKNQMENCQTLVDKFMKLDLED 814
Query: 1131 TQTSL 1135
L
Sbjct: 815 PNLDL 819
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 40.8 bits (94), Expect = 0.007
Identities = 56/228 (24%), Positives = 78/228 (34%), Gaps = 68/228 (29%)
Query: 50 GAAAAAAAAAAAAPP-----APPAPAFPPQLPPHIATEIDRRKKRPLENDGP-VKKKVKK 103
G++AAAAAAA AA +PP PPQ+P + RK + E GP V+KK+K
Sbjct: 203 GSSAAAAAAAVAAAVETVTISPPLAVSPPQVPQPVPI----RKAKTKEGKGPGVRKKIK- 257
Query: 104 VQQKEGGSDLGMSGNSEPKKCLRTRNVSKSLEKLKEFCCDSALPQSRVQTESLQERFAVL 163
G D G + L+ R
Sbjct: 258 -----GSKDGKKKGKGKKTAGLKFR----------------------------------- 277
Query: 164 PKCTDFDDISLLHAKNAVSSEDSKRQINQKDTTLFDLSQFGSSNTSHENLQKTASKSANK 223
F IS K + S ED + + + FD + S++ E KS +
Sbjct: 278 -----FGGISNKRKKGSSSEEDEREESD------FDSASIHSASVRSECSAALGKKSKRR 326
Query: 224 RSKSI------YTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEI 265
R K Y Y E+ QQ + +LC C Y D E+
Sbjct: 327 RKKKRIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPEL 374
>gi|4507691 transformation/transcription domain-associated protein
[Homo sapiens]
Length = 3830
Score = 39.3 bits (90), Expect = 0.021
Identities = 27/69 (39%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 39 SSTGAADQVDPGAAAAAAAAAAAAPPAP-PAPAFPPQLPPHIATEIDRRKKRPLENDGPV 97
S GA + PG A AA A PAP PAP PP PP AT + P E G
Sbjct: 475 SELGAVEAALPGVPTAPAAPGPAPSPAPVPAPP-PPPPPPPPATPVTPAPVPPFEKQGEK 533
Query: 98 KKKVKKVQQ 106
K+ K+ Q
Sbjct: 534 DKEDKQTFQ 542
>gi|19111150 angiomotin isoform 2 [Homo sapiens]
Length = 675
Score = 39.3 bits (90), Expect = 0.021
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 6 PASGGLAASSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAAAAPPA 65
PA+ + ++A A A +S + G + + +S AA V P AAAAAA A A PA
Sbjct: 512 PAAAAAPSPATAAATAAAVSP--AAAGQIPAAASVASAA-AVAPSAAAAAAVQVAPAAPA 568
Query: 66 P-PAPAFPPQLPPHIA 80
P PAPA P P A
Sbjct: 569 PVPAPALVPVPAPAAA 584
Score = 33.9 bits (76), Expect = 0.90
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 16/76 (21%)
Query: 13 ASSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAAAAP--------- 63
A+++APA A S +T + + + S AA Q+ AAA+ A+AAA AP
Sbjct: 507 AAAAAPAAAAAPS---PATAAATAAAVSPAAAGQIP--AAASVASAAAVAPSAAAAAAVQ 561
Query: 64 --PAPPAPAFPPQLPP 77
PA PAP P L P
Sbjct: 562 VAPAAPAPVPAPALVP 577
>gi|166064029 angiomotin isoform 1 [Homo sapiens]
Length = 1084
Score = 39.3 bits (90), Expect = 0.021
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 6 PASGGLAASSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAAAAPPA 65
PA+ + ++A A A +S + G + + +S AA V P AAAAAA A A PA
Sbjct: 921 PAAAAAPSPATAAATAAAVSP--AAAGQIPAAASVASAA-AVAPSAAAAAAVQVAPAAPA 977
Query: 66 P-PAPAFPPQLPPHIA 80
P PAPA P P A
Sbjct: 978 PVPAPALVPVPAPAAA 993
Score = 33.9 bits (76), Expect = 0.90
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 16/76 (21%)
Query: 13 ASSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAAAAP--------- 63
A+++APA A S +T + + + S AA Q+ AAA+ A+AAA AP
Sbjct: 916 AAAAAPAAAAAPS---PATAAATAAAVSPAAAGQIP--AAASVASAAAVAPSAAAAAAVQ 970
Query: 64 --PAPPAPAFPPQLPP 77
PA PAP P L P
Sbjct: 971 VAPAAPAPVPAPALVP 986
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 38.9 bits (89), Expect = 0.028
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 42 GAADQVDPGAAAAAAA-----AAAAAPPAPPAPAFPPQLPPHIATEIDR---RKKRPLEN 93
G+A V AAAAAAA +AA + P AP+ PP LPP A +I R+ + E
Sbjct: 204 GSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEG 263
Query: 94 DGPVKKKVKK 103
GP K+ K
Sbjct: 264 KGPGHKRRSK 273
Score = 33.1 bits (74), Expect = 1.5
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 36 STSSSTGAADQVDPGAAAAAAAAAAAAPPAPPAPAFPPQLPPHIATEI--------DRRK 87
+ +++ A+QV ++A A + P PP PA Q PP + RR
Sbjct: 213 AAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRS 272
Query: 88 KRPLENDGPVKKKVKKV------------QQKEGGS 111
K P DG K + KK+ ++K+GGS
Sbjct: 273 KSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGS 308
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 38.9 bits (89), Expect = 0.028
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 42 GAADQVDPGAAAAAAA-----AAAAAPPAPPAPAFPPQLPPHIATEIDR---RKKRPLEN 93
G+A V AAAAAAA +AA + P AP+ PP LPP A +I R+ + E
Sbjct: 204 GSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEG 263
Query: 94 DGPVKKKVKK 103
GP K+ K
Sbjct: 264 KGPGHKRRSK 273
Score = 33.1 bits (74), Expect = 1.5
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 36 STSSSTGAADQVDPGAAAAAAAAAAAAPPAPPAPAFPPQLPPHIATEI--------DRRK 87
+ +++ A+QV ++A A + P PP PA Q PP + RR
Sbjct: 213 AAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRS 272
Query: 88 KRPLENDGPVKKKVKKV------------QQKEGGS 111
K P DG K + KK+ ++K+GGS
Sbjct: 273 KSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGS 308
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 38.9 bits (89), Expect = 0.028
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 42 GAADQVDPGAAAAAAA-----AAAAAPPAPPAPAFPPQLPPHIATEIDR---RKKRPLEN 93
G+A V AAAAAAA +AA + P AP+ PP LPP A +I R+ + E
Sbjct: 263 GSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEG 322
Query: 94 DGPVKKKVKK 103
GP K+ K
Sbjct: 323 KGPGHKRRSK 332
Score = 33.1 bits (74), Expect = 1.5
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 36 STSSSTGAADQVDPGAAAAAAAAAAAAPPAPPAPAFPPQLPPHIATEI--------DRRK 87
+ +++ A+QV ++A A + P PP PA Q PP + RR
Sbjct: 272 AAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQPPPIRRAKTKEGKGPGHKRRS 331
Query: 88 KRPLENDGPVKKKVKKV------------QQKEGGS 111
K P DG K + KK+ ++K+GGS
Sbjct: 332 KSPRVPDGRKKLRGKKMAPLKIKLGLLGGKRKKGGS 367
Score = 30.4 bits (67), Expect = 10.0
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 25/101 (24%)
Query: 63 PPAPPAPAFPPQLPPHIATEIDRR---------------KKRPLENDGPVKKKVKKVQQK 107
PP PP P PP PP + D R KK+ G +K+ K+ ++
Sbjct: 75 PPPPPPPPLPPPPPPPPPDKDDIRLLPSALGVKKRKRGPKKQKENKPGKPRKRKKRDSEE 134
Query: 108 EGGS------DLGMSGNSE----PKKCLRTRNVSKSLEKLK 138
E GS + SG SE P + R ++ K +K K
Sbjct: 135 EFGSERDEYREKSESGGSEYGTGPGRKRRRKHREKKEKKTK 175
>gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]
Length = 525
Score = 38.9 bits (89), Expect = 0.028
Identities = 27/66 (40%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 7 ASGGLAASSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAAAAPPAP 66
A+GG +S P V TG S++ A AAAAAAAAAAAA P P
Sbjct: 2 AAGGSGGRASCPPGVGV----GPGTGGSPGPSANAAATPAPGNAAAAAAAAAAAAAAPGP 57
Query: 67 PAPAFP 72
PA P
Sbjct: 58 TPPAPP 63
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 38.1 bits (87), Expect = 0.048
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 6 PASGGLAASSSAPARQ--AVLSR---FFQSTGSLKSTSSSTGAAD---QVDPGAAAAAAA 57
P+ + + +PARQ A L++ S G+ + S GA P AAAAAA
Sbjct: 1291 PSGSAGPSPAPSPARQPPAALAKPPGTPPSLGASPAKPPSPGAPALHVPAKPPRAAAAAA 1350
Query: 58 AAAAAPPAPPAPAFP 72
AAAAAPPAPP A P
Sbjct: 1351 AAAAAPPAPPEGASP 1365
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 38.1 bits (87), Expect = 0.048
Identities = 35/101 (34%), Positives = 46/101 (45%), Gaps = 27/101 (26%)
Query: 4 RKPASGGLAASSSAPARQA---------VLSRFFQSTGS-----------LKSTSSSTGA 43
+ PA+GGL++ S P + + +LSR S S+SSS+ +
Sbjct: 73 KPPATGGLSSLGSPPQQLSAATPHGINDILSRPSMPVASGAALPSASPSGSSSSSSSSAS 132
Query: 44 ADQVDPGAAAAAAAAAAAAPPA---PPAPAF----PPQLPP 77
A AAAAAAAAAAA+ PA P F PP PP
Sbjct: 133 ASSASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPP 173
>gi|210032509 hypothetical protein LOC100130302 [Homo sapiens]
Length = 887
Score = 38.1 bits (87), Expect = 0.048
Identities = 31/79 (39%), Positives = 38/79 (48%), Gaps = 14/79 (17%)
Query: 7 ASGGLAASSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAAAAPPAP 66
+SG +++ +S P +QA GS S AA AAAAAAAAAAAA PAP
Sbjct: 470 SSGKISSGNSFPPQQA---------GSPLKRPFSAAAAIAAAAAAAAAAAAAAAAAAPAP 520
Query: 67 -----PAPAFPPQLPPHIA 80
APA P +A
Sbjct: 521 ALAAAAAPALAAAAAPALA 539
Score = 34.3 bits (77), Expect = 0.69
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 7 ASGGLAASSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAAAAPPAP 66
A+ AA+++APA A+ + + + + + + AA P AA A AAA AAA A
Sbjct: 507 AAAAAAAAAAAPA-PALAAAAAPALAAAAAPALAAAAAPAPAPAAAPAVAAAPAAAASAA 565
Query: 67 PAPAFPPQLP 76
P+ + P +P
Sbjct: 566 PSHSQKPSVP 575
Score = 31.6 bits (70), Expect = 4.5
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 1 MSRRKPASGGLAASSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAA 60
+ R A+ +AA+++A A A + +L + ++ AA AAA A AAAA
Sbjct: 489 LKRPFSAAAAIAAAAAAAAAAAAAAAAAAPAPALAAAAAPALAA------AAAPALAAAA 542
Query: 61 AAPPAPPAPAFPPQLPPHIATEIDRRKKRP 90
A PAP A P A+ ++P
Sbjct: 543 APAPAPAAAPAVAAAPAAAASAAPSHSQKP 572
>gi|30089916 phosphofurin acidic cluster sorting protein 1 [Homo
sapiens]
Length = 963
Score = 38.1 bits (87), Expect = 0.048
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 18 PARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAAAAPPAPPAPA---FPPQ 74
P +Q + Q+T S STS++ ++ + A A A+ +APP P P P Q
Sbjct: 41 PPQQPTPPKLAQATSSSSSTSAAAASSSSSSTSTSMAVAVASGSAPPGGPGPGRTPAPVQ 100
Query: 75 LPPHIATEIDR 85
+ + E+DR
Sbjct: 101 MNLYATWEVDR 111
>gi|155369221 potassium channel tetramerisation domain containing 19
[Homo sapiens]
Length = 926
Score = 38.1 bits (87), Expect = 0.048
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 11 LAASSSAPARQAVLSRFFQSTGSLKSTSSST----GAADQVDPGAAAAAAAAAAAAPPAP 66
L A+ S+P +A L S + + ++S+ A + DPG A A A A
Sbjct: 655 LTATRSSPLEEATLQLPLGSEAASQPSTSAAWKAHSTASEKDPGPQAGAGAGAK---DKG 711
Query: 67 PAPAFPPQLPPHIA-TEIDRRKKRPLENDGPVKKK 100
P P F P LPP A T D K+R E + P ++
Sbjct: 712 PEPTFKPYLPPKRAGTLKDWSKQRTKERESPAPEQ 746
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 37.4 bits (85), Expect = 0.082
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 21/142 (14%)
Query: 2 SRRKPASGGLAASSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAAA 61
++RK S ++SSS+ + + S+ S S+SSS+ ++ +++++ + A
Sbjct: 2601 AKRKRRSSSSSSSSSSSSSSS------SSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKP 2654
Query: 62 APPAPPAPAFPPQLPPHIATEIDRRKK------------RPLENDGPVKKKVKKVQQ--- 106
P A P PA P + PP RK P+E P + + QQ
Sbjct: 2655 GPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSS 2714
Query: 107 KEGGSDLGMSGNSEPKKCLRTR 128
E GS G G+S R R
Sbjct: 2715 SERGSRRGQRGDSRSPSHKRRR 2736
Score = 32.7 bits (73), Expect = 2.0
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 2/129 (1%)
Query: 6 PASGGLAASSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAA-AAAAAPP 64
PAS G S+ A Q R S+ S S+SSS+ ++ ++ ++++ + ++ P
Sbjct: 2510 PASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLP 2569
Query: 65 APPAPAFPPQLPPHIATEIDRRKKRPLENDGPVKKKVKKVQQKEGGSDLGMSGNSEPKKC 124
P A P A + R+ RP E P K+K + S S +S
Sbjct: 2570 VQPEVALKRVPSPTPAPKEAVREGRPPE-PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSS 2628
Query: 125 LRTRNVSKS 133
+ + S S
Sbjct: 2629 SSSSSSSSS 2637
Score = 32.0 bits (71), Expect = 3.4
Identities = 45/201 (22%), Positives = 80/201 (39%), Gaps = 6/201 (2%)
Query: 30 STGSLKSTSSSTGAADQV-DPGAAAAAAAAAAAAPPAPPAPAFPPQLPPHIATEIDRRKK 88
S L S +G++ +V D AA A + + + P P APA P LP + + +
Sbjct: 1587 SKSRLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPA-PRALPRRSRSGSSSKGR 1645
Query: 89 RPLENDGPVKKKVKKVQQKEGGSDLGMSGNSEPKKCLRTRNVSKSLEKLKEFCCDSALP- 147
P + + K + G + EPK RT +S E + L
Sbjct: 1646 GPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSR 1705
Query: 148 QSRVQTESLQERFAVLPKCTDFDDISLLHAKNAVSSEDSKRQINQKDTTLFDLSQFG-SS 206
+SR + S + R P+ +S + A S S+R+ + S+ G S
Sbjct: 1706 RSRSASSSPETRSRTPPRHRRSPSVS--SPEPAEKSRSSRRRRSASSPRTKTTSRRGRSP 1763
Query: 207 NTSHENLQKTASKSANKRSKS 227
+ LQ++ S+S +++++
Sbjct: 1764 SPKPRGLQRSRSRSRREKTRT 1784
Score = 30.8 bits (68), Expect = 7.6
Identities = 17/65 (26%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 18 PARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAAAAPPAPPAPAFP-PQLP 76
PA++ S S+ S S+SSS+ ++ ++++++++++++ + P+PA P PQ
Sbjct: 2600 PAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQAL 2659
Query: 77 PHIAT 81
P A+
Sbjct: 2660 PKPAS 2664
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 37.0 bits (84), Expect = 0.11
Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 18/135 (13%)
Query: 4 RKPASGGLAASSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAAAAP 63
R+P G A + P + SR L+S + D G A+ A A AP
Sbjct: 996 RRPREGRAKAKAKVPKEK---SRRVLGNLDLQSEEIQGREKSRPDLGGASKAKPPTAPAP 1052
Query: 64 PAPPAPAFPPQLP---------------PHIATEIDRRKKRPLENDGPVKKKVKKVQQKE 108
P+ PAP+ P P P + D K R L P + K++ ++ +
Sbjct: 1053 PSAPAPSAQPTPPSASVPGKKAREEAPGPPGVSRADMLKLRSLSEGPPKELKIRLIKVES 1112
Query: 109 GGSDLGMSGNSEPKK 123
G + ++ E ++
Sbjct: 1113 GDKETFIASEVEERR 1127
>gi|226958575 RAS protein activator like 2 isoform 2 [Homo sapiens]
Length = 1280
Score = 36.6 bits (83), Expect = 0.14
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 4 RKPASGGLAASSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAAAAP 63
RK GGL A + AP S +STGS+ S++ A+ V G+ + ++++
Sbjct: 1012 RKVDQGGLGARAKAPP-SLPHSASLRSTGSMSVVSAAL-VAEPVQNGSRSRQQSSSSRES 1069
Query: 64 PAPPAPAFPPQLPPHIATEIDRRKKRPLE-------NDGPVKKKVKKVQQ 106
P P A Q + + +D P+E N+G ++ V++ +Q
Sbjct: 1070 PVPKVRAIQRQQTQQVQSPVDSATMSPVERTAAWVLNNGQYEEDVEETEQ 1119
>gi|4758808 RAS protein activator like 2 isoform 1 [Homo sapiens]
Length = 1139
Score = 36.6 bits (83), Expect = 0.14
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 9/110 (8%)
Query: 4 RKPASGGLAASSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAAAAP 63
RK GGL A + AP S +STGS+ S++ A+ V G+ + ++++
Sbjct: 871 RKVDQGGLGARAKAPP-SLPHSASLRSTGSMSVVSAAL-VAEPVQNGSRSRQQSSSSRES 928
Query: 64 PAPPAPAFPPQLPPHIATEIDRRKKRPLE-------NDGPVKKKVKKVQQ 106
P P A Q + + +D P+E N+G ++ V++ +Q
Sbjct: 929 PVPKVRAIQRQQTQQVQSPVDSATMSPVERTAAWVLNNGQYEEDVEETEQ 978
>gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo
sapiens]
Length = 493
Score = 36.6 bits (83), Expect = 0.14
Identities = 20/28 (71%), Positives = 20/28 (71%)
Query: 43 AADQVDPGAAAAAAAAAAAAPPAPPAPA 70
AA Q AAAAAAAAAAA APPAPA
Sbjct: 90 AAAQESAAAAAAAAAAAAAVAAAPPAPA 117
Score = 35.4 bits (80), Expect = 0.31
Identities = 22/39 (56%), Positives = 22/39 (56%), Gaps = 12/39 (30%)
Query: 51 AAAAAAAAAAAAPPAPPA------------PAFPPQLPP 77
AAAAAAAA AAAPPAP A PA PP PP
Sbjct: 101 AAAAAAAAVAAAPPAPAAASTVDTAALKQPPAPPPPPPP 139
Score = 30.8 bits (68), Expect = 7.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 29 QSTGSLKSTSSSTGAADQVDPGAAAAAAAAAAAA---PPAPPAPAFPPQLP 76
Q + + + +++ AA P A AAA+ AA PPAPP P P P
Sbjct: 93 QESAAAAAAAAAAAAAVAAAPPAPAAASTVDTAALKQPPAPPPPPPPVSAP 143
>gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo
sapiens]
Length = 477
Score = 36.6 bits (83), Expect = 0.14
Identities = 20/28 (71%), Positives = 20/28 (71%)
Query: 43 AADQVDPGAAAAAAAAAAAAPPAPPAPA 70
AA Q AAAAAAAAAAA APPAPA
Sbjct: 90 AAAQESAAAAAAAAAAAAAVAAAPPAPA 117
Score = 35.4 bits (80), Expect = 0.31
Identities = 22/39 (56%), Positives = 22/39 (56%), Gaps = 12/39 (30%)
Query: 51 AAAAAAAAAAAAPPAPPA------------PAFPPQLPP 77
AAAAAAAA AAAPPAP A PA PP PP
Sbjct: 101 AAAAAAAAVAAAPPAPAAASTVDTAALKQPPAPPPPPPP 139
Score = 30.8 bits (68), Expect = 7.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 29 QSTGSLKSTSSSTGAADQVDPGAAAAAAAAAAAA---PPAPPAPAFPPQLP 76
Q + + + +++ AA P A AAA+ AA PPAPP P P P
Sbjct: 93 QESAAAAAAAAAAAAAVAAAPPAPAAASTVDTAALKQPPAPPPPPPPVSAP 143
>gi|62422554 p21-activated kinase 4 isoform 1 [Homo sapiens]
Length = 591
Score = 36.6 bits (83), Expect = 0.14
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 6 PASGGLAA--SSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAAAAP 63
P++GGLA SSS+ +R +R S G L +S +P A A AA A
Sbjct: 232 PSAGGLAIPQSSSSSSRPPTRARGAPSPGVLGPHAS--------EPQLAPPACTPAAPAV 283
Query: 64 PAPPAPAFPPQLPPHIATE 82
P PP P P + P ++ E
Sbjct: 284 PGPPGPRSPQREPQRVSHE 302
>gi|62422561 p21-activated kinase 4 isoform 2 [Homo sapiens]
Length = 438
Score = 36.6 bits (83), Expect = 0.14
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 6 PASGGLAA--SSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAAAAP 63
P++GGLA SSS+ +R +R S G L +S +P A A AA A
Sbjct: 79 PSAGGLAIPQSSSSSSRPPTRARGAPSPGVLGPHAS--------EPQLAPPACTPAAPAV 130
Query: 64 PAPPAPAFPPQLPPHIATE 82
P PP P P + P ++ E
Sbjct: 131 PGPPGPRSPQREPQRVSHE 149
>gi|62422563 p21-activated kinase 4 isoform 2 [Homo sapiens]
Length = 438
Score = 36.6 bits (83), Expect = 0.14
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 6 PASGGLAA--SSSAPARQAVLSRFFQSTGSLKSTSSSTGAADQVDPGAAAAAAAAAAAAP 63
P++GGLA SSS+ +R +R S G L +S +P A A AA A
Sbjct: 79 PSAGGLAIPQSSSSSSRPPTRARGAPSPGVLGPHAS--------EPQLAPPACTPAAPAV 130
Query: 64 PAPPAPAFPPQLPPHIATE 82
P PP P P + P ++ E
Sbjct: 131 PGPPGPRSPQREPQRVSHE 149
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,815,321
Number of Sequences: 37866
Number of extensions: 1758285
Number of successful extensions: 18042
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 200
Number of HSP's that attempted gapping in prelim test: 15365
Number of HSP's gapped (non-prelim): 1957
length of query: 1137
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1024
effective length of database: 13,968,660
effective search space: 14303907840
effective search space used: 14303907840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.