Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KCTD19 Sequence: fasta or formatted (926aa) NCBI GI: 155369221
Description:

potassium channel tetramerisation domain containing 19

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         59           2
 C cysteine            2.3         21           1
 D aspartate           4.4         41           2
 E glutamate           8.0         74           3
 F phenylalanine       3.9         36           2
 G glycine             4.8         44           2
 H histidine           2.7         25           2
 I isoleucine          3.9         36           2
 K lysine              5.7         53           3
 L leucine            11.9        110           2
 M methionine          1.9         18           1
 N asparagine          2.7         25           1
 P proline             6.9         64           2
 Q glutamine           4.0         37           2
 R arginine            4.8         44           2
 S serine              8.4         78           2
 T threonine           6.9         64           2
 V valine              4.9         45           2
 W tryptophan          2.3         21           1
 Y tyrosine            3.3         31           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium channel tetramerisation domain containing... 
KCTD1                 0.023   potassium channel tetramerisation domain containing...
KCTD1                 0.023   potassium channel tetramerisation domain containing...
KCTD1                 0.023   potassium channel tetramerisation domain containing ...
KCTD15                0.021   potassium channel tetramerisation domain containing...
KCTD15                0.021   potassium channel tetramerisation domain containing...
KCTD15                0.021   potassium channel tetramerisation domain containing...
KCTD4                 0.020   potassium channel tetramerisation domain containing...
KCTD6                 0.018   potassium channel tetramerisation domain containing...
KCTD6                 0.018   potassium channel tetramerisation domain containing...
KCTD21                0.016   potassium channel tetramerisation domain containing ...
KCTD11                0.014   potassium channel tetramerisation domain containing ...
KCNRG                 0.012   potassium channel regulator isoform 2 
KCNRG                 0.012   potassium channel regulator isoform 1 
KCTD12                0.011   potassium channel tetramerisation domain containing ...
KCTD16                0.011   potassium channel tetramerisation domain containing ...
SHKBP1                0.010   SH3KBP1 binding protein 1 
KCTD18                0.009   potassium channel tetramerization domain containing ...
KCTD3                 0.009   potassium channel tetramerisation domain containing ...
KCTD7                 0.009   potassium channel tetramerisation domain containing ...
KCND2                 0.009   potassium voltage-gated channel, Shal-related subfami...
KCND1                 0.008   potassium voltage-gated channel, Shal-related subfam...
KCNS3                 0.008   potassium voltage-gated channel delayed-rectifier pr...
KCTD14                0.008   potassium channel tetramerisation domain containing...
KCND3                 0.007   potassium voltage-gated channel, Shal-related subfam...
KCND3                 0.007   potassium voltage-gated channel, Shal-related subfam...
MAP7D1                0.007   MAP7 domain containing 1 
KCTD10                0.007   potassium channel tetramerisation domain containing ...
MSH3                  0.007   mutS homolog 3 
ZNF703                0.006   zinc finger protein 703 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press