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Search of human proteins with 6598318
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6598318 agouti related protein homolog isoform 2 [Homo
sapiens]
(132 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4501995 agouti related protein homolog isoform 1 [Homo sapiens] 274 2e-74
gi|6598318 agouti related protein homolog isoform 2 [Homo sapiens] 274 2e-74
gi|21327680 agouti signaling protein precursor [Homo sapiens] 51 3e-07
gi|239755581 PREDICTED: hypothetical protein [Homo sapiens] 30 0.55
gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens] 29 0.94
gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens] 29 0.94
gi|93141033 PAX interacting protein 1 [Homo sapiens] 29 1.2
gi|130979214 adrenocortical dysplasia homolog isoform 3 [Homo sa... 28 1.6
gi|130978956 adrenocortical dysplasia homolog isoform 1 [Homo sa... 28 1.6
gi|130978962 adrenocortical dysplasia homolog isoform 2 [Homo sa... 28 1.6
gi|89363020 nuclear transcription factor, X-box binding-like 1 [... 28 1.6
gi|55749779 DENN/MADD domain containing 1A isoform 1 [Homo sapiens] 28 1.6
gi|4503443 endothelin converting enzyme 1 isoform 1 [Homo sapiens] 28 2.1
gi|226529806 histone deacetylase 10 isoform 2 [Homo sapiens] 28 2.1
gi|20070354 histone deacetylase 10 isoform 1 [Homo sapiens] 28 2.1
gi|75677376 coiled-coil domain containing 62 isoform b [Homo sap... 28 2.7
gi|30348972 coiled-coil domain containing 62 isoform a [Homo sap... 28 2.7
gi|19923987 nucleoredoxin-like 1 [Homo sapiens] 28 2.7
gi|223555935 dynein, axonemal, heavy polypeptide 14 isoform 1 [H... 27 3.6
gi|40317626 thrombospondin 1 precursor [Homo sapiens] 27 3.6
gi|4503617 exostoses-like 3 [Homo sapiens] 27 3.6
gi|41393187 NADPH oxidase activator 1 [Homo sapiens] 27 3.6
gi|88196790 coiled-coil domain containing 88 [Homo sapiens] 27 3.6
gi|166295179 ELG protein isoform a [Homo sapiens] 27 3.6
gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo ... 27 4.7
gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo ... 27 4.7
gi|110347423 spondin 1, extracellular matrix protein [Homo sapiens] 27 4.7
gi|61743980 stabilin 2 precursor [Homo sapiens] 27 4.7
gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens] 27 4.7
gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens] 27 4.7
>gi|4501995 agouti related protein homolog isoform 1 [Homo sapiens]
Length = 132
Score = 274 bits (700), Expect = 2e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MLTAAVLSCALLLALPATRGAQMGLAPMEGIRRPDQALLPELPGLGLRAPLKKTTAEQAE 60
MLTAAVLSCALLLALPATRGAQMGLAPMEGIRRPDQALLPELPGLGLRAPLKKTTAEQAE
Sbjct: 1 MLTAAVLSCALLLALPATRGAQMGLAPMEGIRRPDQALLPELPGLGLRAPLKKTTAEQAE 60
Query: 61 EDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCR 120
EDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCR
Sbjct: 61 EDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCR 120
Query: 121 KLGTAMNPCSRT 132
KLGTAMNPCSRT
Sbjct: 121 KLGTAMNPCSRT 132
>gi|6598318 agouti related protein homolog isoform 2 [Homo sapiens]
Length = 132
Score = 274 bits (700), Expect = 2e-74
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MLTAAVLSCALLLALPATRGAQMGLAPMEGIRRPDQALLPELPGLGLRAPLKKTTAEQAE 60
MLTAAVLSCALLLALPATRGAQMGLAPMEGIRRPDQALLPELPGLGLRAPLKKTTAEQAE
Sbjct: 1 MLTAAVLSCALLLALPATRGAQMGLAPMEGIRRPDQALLPELPGLGLRAPLKKTTAEQAE 60
Query: 61 EDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCR 120
EDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCR
Sbjct: 61 EDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCR 120
Query: 121 KLGTAMNPCSRT 132
KLGTAMNPCSRT
Sbjct: 121 KLGTAMNPCSRT 132
>gi|21327680 agouti signaling protein precursor [Homo sapiens]
Length = 132
Score = 50.8 bits (120), Expect = 3e-07
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 39 LPELPGLGLRAPLKKTTAEQAEEDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQ 98
+P + + L K+ + AE+ + +A + + ++ R P S+ CV SC
Sbjct: 47 VPSVSIVALNKKSKQIGRKAAEKKRSSKKEASMKKV-VRPRTPLSAP-CVATRNSCKPPA 104
Query: 99 VPCCDPCATCYCRFFNAFCYCRKL 122
CCDPCA+C CRFF + C CR L
Sbjct: 105 PACCDPCASCQCRFFRSACSCRVL 128
>gi|239755581 PREDICTED: hypothetical protein [Homo sapiens]
Length = 319
Score = 30.0 bits (66), Expect = 0.55
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 76 LQDREPRSSRRCVRLHESCLGQQVPCCDP 104
L D P S+ C H + LGQQ+PC P
Sbjct: 98 LLDTTPGESQGCWHSHTTLLGQQLPCQQP 126
>gi|38045910 laminin alpha 3 subunit isoform 1 [Homo sapiens]
Length = 3333
Score = 29.3 bits (64), Expect = 0.94
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 91 HESCL---GQQVPCCDPCATCYCRF-FNAFCYCRKLGTAMNPCS 130
H CL G + P CD C + + F C+C LG+ PCS
Sbjct: 506 HGRCLCRPGVEGPRCDTCRSGFYSFPICQACWCSALGSYQMPCS 549
>gi|189217425 laminin alpha 3 subunit isoform 3 [Homo sapiens]
Length = 3277
Score = 29.3 bits (64), Expect = 0.94
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 91 HESCL---GQQVPCCDPCATCYCRF-FNAFCYCRKLGTAMNPCS 130
H CL G + P CD C + + F C+C LG+ PCS
Sbjct: 506 HGRCLCRPGVEGPRCDTCRSGFYSFPICQACWCSALGSYQMPCS 549
>gi|93141033 PAX interacting protein 1 [Homo sapiens]
Length = 1069
Score = 28.9 bits (63), Expect = 1.2
Identities = 18/78 (23%), Positives = 33/78 (42%)
Query: 22 QMGLAPMEGIRRPDQALLPELPGLGLRAPLKKTTAEQAEEDLLQEAQALAEVLDLQDREP 81
Q L P + + RP Q L P L+ + Q ++ L + Q +L Q ++
Sbjct: 472 QQQLHPPQQLHRPQQQLQPFQQQHALQQQFHQLQQHQLQQQQLAQLQQQHSLLQQQQQQQ 531
Query: 82 RSSRRCVRLHESCLGQQV 99
++ R+H+ QQ+
Sbjct: 532 IQQQQLQRMHQQQQQQQM 549
>gi|130979214 adrenocortical dysplasia homolog isoform 3 [Homo
sapiens]
Length = 528
Score = 28.5 bits (62), Expect = 1.6
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 24 GLAPMEGIRRPDQ-ALLP------ELPGLGLRAPLKKTTAEQAEEDLLQEAQA-----LA 71
G AP E + D+ +LLP +PG ++K + EE L + + L+
Sbjct: 193 GGAPAEFYLQVDRFSLLPTEQPRLRVPGCNQDLDVQKKLYDCLEEHLSESTSSNAGLSLS 252
Query: 72 EVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCRKLGTAM 126
++LD + V L ESCL + PC P T + A C+ G A+
Sbjct: 253 QLLDEMREDQEHQGALVCLAESCLTLEGPCTAPPVTHW-----AASRCKATGEAV 302
>gi|130978956 adrenocortical dysplasia homolog isoform 1 [Homo
sapiens]
Length = 544
Score = 28.5 bits (62), Expect = 1.6
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 24 GLAPMEGIRRPDQ-ALLP------ELPGLGLRAPLKKTTAEQAEEDLLQEAQA-----LA 71
G AP E + D+ +LLP +PG ++K + EE L + + L+
Sbjct: 196 GGAPAEFYLQVDRFSLLPTEQPRLRVPGCNQDLDVQKKLYDCLEEHLSESTSSNAGLSLS 255
Query: 72 EVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCRKLGTAM 126
++LD + V L ESCL + PC P T + A C+ G A+
Sbjct: 256 QLLDEMREDQEHQGALVCLAESCLTLEGPCTAPPVTHW-----AASRCKATGEAV 305
>gi|130978962 adrenocortical dysplasia homolog isoform 2 [Homo
sapiens]
Length = 541
Score = 28.5 bits (62), Expect = 1.6
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 17/115 (14%)
Query: 24 GLAPMEGIRRPDQ-ALLP------ELPGLGLRAPLKKTTAEQAEEDLLQEAQA-----LA 71
G AP E + D+ +LLP +PG ++K + EE L + + L+
Sbjct: 193 GGAPAEFYLQVDRFSLLPTEQPRLRVPGCNQDLDVQKKLYDCLEEHLSESTSSNAGLSLS 252
Query: 72 EVLDLQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCRKLGTAM 126
++LD + V L ESCL + PC P T + A C+ G A+
Sbjct: 253 QLLDEMREDQEHQGALVCLAESCLTLEGPCTAPPVTHW-----AASRCKATGEAV 302
>gi|89363020 nuclear transcription factor, X-box binding-like 1
[Homo sapiens]
Length = 911
Score = 28.5 bits (62), Expect = 1.6
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 18/62 (29%)
Query: 82 RSSRRCVRLHESC-----LGQQVPC--------CDPCAT-----CYCRFFNAFCYCRKLG 123
++ C+ E C LG PC C PC C+C+ + + CRK+
Sbjct: 693 KAGPECLHCEEGCSKSRPLGCLHPCILRCHPGECPPCVQMLRIKCHCKITSLYVECRKIT 752
Query: 124 TA 125
TA
Sbjct: 753 TA 754
>gi|55749779 DENN/MADD domain containing 1A isoform 1 [Homo sapiens]
Length = 1009
Score = 28.5 bits (62), Expect = 1.6
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 15 LPATRGAQMGLAPMEGI--RRPDQALLPELPGLGLRAPLKKTTAEQAE---EDLLQEAQ 68
LP R + +G+ R D LLP P GL L+ + +QA EDLLQ+ +
Sbjct: 924 LPLARSSARAAETKQGLALRPGDPPLLPPRPPQGLEPTLQPSAPQQARDPFEDLLQKTK 982
>gi|4503443 endothelin converting enzyme 1 isoform 1 [Homo
sapiens]
Length = 770
Score = 28.1 bits (61), Expect = 2.1
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 28 MEGIRRPDQALLPELPGLGLRAPLKKTTAEQAEEDLLQEAQALAEVLDLQDREPRSSRRC 87
M G+ P + L L LG+ + T E+ D L E A L + PRS +RC
Sbjct: 1 MRGVWPPPVSAL--LSALGMSTYKRATLDEEDLVDSLSEGDAYPNGLQVNFHSPRSGQRC 58
>gi|226529806 histone deacetylase 10 isoform 2 [Homo sapiens]
Length = 649
Score = 28.1 bits (61), Expect = 2.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 1 MLTAAVLSCALLLALPATRGAQ-----MGLAPMEGIRRPDQALL 39
++T LSC L L LP G Q + L P G++ P ALL
Sbjct: 530 VMTGGFLSCILGLVLPLAYGFQPDLVLVALGPGHGLQGPHAALL 573
>gi|20070354 histone deacetylase 10 isoform 1 [Homo sapiens]
Length = 669
Score = 28.1 bits (61), Expect = 2.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 1 MLTAAVLSCALLLALPATRGAQ-----MGLAPMEGIRRPDQALL 39
++T LSC L L LP G Q + L P G++ P ALL
Sbjct: 550 VMTGGFLSCILGLVLPLAYGFQPDLVLVALGPGHGLQGPHAALL 593
>gi|75677376 coiled-coil domain containing 62 isoform b [Homo
sapiens]
Length = 684
Score = 27.7 bits (60), Expect = 2.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 74 LDLQDREPRSSRRCVRLHESCLGQQVPCCDPC 105
++ QD+ RS C + +E+CLG+ C C
Sbjct: 484 VECQDQMERSEISCCQKNEACLGESGMCDSKC 515
>gi|30348972 coiled-coil domain containing 62 isoform a [Homo
sapiens]
Length = 682
Score = 27.7 bits (60), Expect = 2.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 74 LDLQDREPRSSRRCVRLHESCLGQQVPCCDPC 105
++ QD+ RS C + +E+CLG+ C C
Sbjct: 484 VECQDQMERSEISCCQKNEACLGESGMCDSKC 515
>gi|19923987 nucleoredoxin-like 1 [Homo sapiens]
Length = 212
Score = 27.7 bits (60), Expect = 2.7
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 8/33 (24%)
Query: 68 QALAEVLD--------LQDREPRSSRRCVRLHE 92
Q AEVLD L+D+EPRS C+R H+
Sbjct: 153 QEAAEVLDRNFQLPEDLEDQEPRSLTECLRRHK 185
>gi|223555935 dynein, axonemal, heavy polypeptide 14 isoform 1 [Homo
sapiens]
Length = 4515
Score = 27.3 bits (59), Expect = 3.6
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 45 LGLRAPLKKTTAEQAEEDLLQEAQALAEVLDLQDREPRSSRRCVRLHES 93
L LR P + ++E ++E+ + Q E + +D + CV+ H S
Sbjct: 519 LCLRIPAESDSSENSKENFHESDQCPEECVMFEDEMSENKDNCVKKHSS 567
>gi|40317626 thrombospondin 1 precursor [Homo sapiens]
Length = 1170
Score = 27.3 bits (59), Expect = 3.6
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 103 DPCATCYCRFFNAFCYCRKLGTAMNPCS 130
D C C+C+ N+ C+K+ + PCS
Sbjct: 334 DSCTECHCQ--NSVTICKKVSCPIMPCS 359
>gi|4503617 exostoses-like 3 [Homo sapiens]
Length = 919
Score = 27.3 bits (59), Expect = 3.6
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 36 QALLPELPGLGLRAPLKKTTAEQAEEDLLQEAQALAEVLD-----LQDREPRSSRRCVRL 90
Q L E+ L L+ K + E A++DLLQ +++ + +P+ S L
Sbjct: 101 QELNSEIAKLNLKIEACKKSIENAKQDLLQLKNVISQTEHSYKELMAQNQPKLSLPIRLL 160
Query: 91 HESCLGQQVPCCDPCATCYCRFFNAFCYCR 120
E P P AT CR N F Y R
Sbjct: 161 PEKDDAGLPP---PKATRGCRLHNCFDYSR 187
>gi|41393187 NADPH oxidase activator 1 [Homo sapiens]
Length = 483
Score = 27.3 bits (59), Expect = 3.6
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 2 LTAAVLSCALLLALPATRGAQM-GLAPMEGIRRPDQALLPELPGL-----GLRAPLKKTT 55
L + CA +AL A RGA + L + G P QA L +L L G P+ +
Sbjct: 313 LVTVTVQCAFTVALRARRGADLSSLRALLGQALPHQAQLGQLSYLAPGEDGHWVPIPE-- 370
Query: 56 AEQAEEDLLQEAQALAEVLDLQDR 79
E++ + Q+A A L LQ R
Sbjct: 371 -EESLQRAWQDAAACPRGLQLQCR 393
>gi|88196790 coiled-coil domain containing 88 [Homo sapiens]
Length = 1476
Score = 27.3 bits (59), Expect = 3.6
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 47 LRAPLKKTTAEQAEEDLLQEAQALAEVLD-----LQDREPRSSRRCVRLHES 93
LR ++ A +A + L+E + L+ VL+ L+++ + RC RLHE+
Sbjct: 336 LRRCRERLQAAEAYKSQLEEERVLSGVLEASKALLEEQLEAARERCARLHET 387
>gi|166295179 ELG protein isoform a [Homo sapiens]
Length = 620
Score = 27.3 bits (59), Expect = 3.6
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 25 LAPMEGIRRPDQALLPELPGLGLRAPLKKTTAEQAEEDLLQEAQALAEVL----DLQDRE 80
+A + G+R +A P P LGL +P ++ ++ E + ++ + E++ L++
Sbjct: 1 MAAVRGLRVSVKAEAPAGPALGLPSPEAESGVDRGEPEPMEVEEGELEIVPVRRSLKELI 60
Query: 81 PRSSRR 86
P +SRR
Sbjct: 61 PDTSRR 66
>gi|239749596 PREDICTED: hypothetical protein XP_002347099 [Homo
sapiens]
Length = 853
Score = 26.9 bits (58), Expect = 4.7
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 84 SRRCVRLHESCLGQQVPCCDPCATC 108
SR CV H+ CL P D C C
Sbjct: 358 SRHCVPCHKDCLECSGPKADDCELC 382
Score = 26.2 bits (56), Expect = 8.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 83 SSRRCVRLHESCLGQQVPCCDPCATCYCRFF 113
S+ RC R + SC G Q P C +C FF
Sbjct: 555 STGRCERCNRSCKGCQGPRPTDCLSCDRFFF 585
>gi|239743863 PREDICTED: hypothetical protein XP_002342982 [Homo
sapiens]
Length = 853
Score = 26.9 bits (58), Expect = 4.7
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 84 SRRCVRLHESCLGQQVPCCDPCATC 108
SR CV H+ CL P D C C
Sbjct: 358 SRHCVPCHKDCLECSGPKADDCELC 382
Score = 26.2 bits (56), Expect = 8.0
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 83 SSRRCVRLHESCLGQQVPCCDPCATCYCRFF 113
S+ RC R + SC G Q P C +C FF
Sbjct: 555 STGRCERCNRSCKGCQGPRPTDCLSCDRFFF 585
>gi|110347423 spondin 1, extracellular matrix protein [Homo sapiens]
Length = 807
Score = 26.9 bits (58), Expect = 4.7
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 76 LQDREPRSSRRCVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCRKL 122
L+ RE R SRR +L E G+Q P C R + A+ C KL
Sbjct: 729 LRWREARESRRSEQLKEESEGEQFP------GCRMRPWTAWSECTKL 769
>gi|61743980 stabilin 2 precursor [Homo sapiens]
Length = 2551
Score = 26.9 bits (58), Expect = 4.7
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 81 PRSSRRCVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCRKLGTAMNP 128
PR +++C+ +H +C ++ C T CR +A C K +A P
Sbjct: 786 PRCNKKCLCVHGTC-NNRIDSDGACLTGTCRDGSAGRLCDKQTSACGP 832
>gi|197333879 genetic suppressor element 1 isoform 2 [Homo sapiens]
Length = 1113
Score = 26.9 bits (58), Expect = 4.7
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 60 EEDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVP 100
EE +EAQ DL D S VR H C+ +Q P
Sbjct: 639 EERRRREAQEKGYYYDLDDSYDESDEEEVRAHLRCVAEQPP 679
>gi|44955926 genetic suppressor element 1 isoform 1 [Homo sapiens]
Length = 1217
Score = 26.9 bits (58), Expect = 4.7
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 60 EEDLLQEAQALAEVLDLQDREPRSSRRCVRLHESCLGQQVP 100
EE +EAQ DL D S VR H C+ +Q P
Sbjct: 743 EERRRREAQEKGYYYDLDDSYDESDEEEVRAHLRCVAEQPP 783
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,243,354
Number of Sequences: 37866
Number of extensions: 229217
Number of successful extensions: 1195
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1159
Number of HSP's gapped (non-prelim): 65
length of query: 132
length of database: 18,247,518
effective HSP length: 91
effective length of query: 41
effective length of database: 14,801,712
effective search space: 606870192
effective search space used: 606870192
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.