| Name: PRPF38B | Sequence: fasta or formatted (546aa) | NCBI GI: 166235169 | |
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Description: PRP38 pre-mRNA processing factor 38 (yeast) domain containing B
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Referenced in:
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 3.1 17 6 C cysteine 0.7 4 1 D aspartate 6.0 33 2 E glutamate 10.1 55 2 F phenylalanine 2.0 11 1 G glycine 6.4 35 4 H histidine 3.5 19 2 I isoleucine 2.7 15 1 K lysine 10.6 58 2 L leucine 4.8 26 2 M methionine 1.5 8 1 N asparagine 2.7 15 2 P proline 3.3 18 2 Q glutamine 4.4 24 5 R arginine 16.5 90 3 S serine 11.5 63 3 T threonine 4.0 22 1 V valine 3.5 19 2 W tryptophan 0.9 5 1 Y tyrosine 1.6 9 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 PRP38 pre-mRNA processing factor 38 (yeast) domain ... LOC100286959 0.132 PREDICTED: hypothetical protein XP_002343921 SFRS12 0.128 splicing factor, arginine/serine-rich 12 isoform a ... SFRS12 0.128 splicing factor, arginine/serine-rich 12 isoform b [... ZC3H13 0.116 zinc finger CCCH-type containing 13 RBM25 0.116 RNA binding motif protein 25 LOC100170229 0.108 hypothetical protein LOC100170229 SFRS4 0.108 splicing factor, arginine/serine-rich 4 PPIG 0.098 peptidylprolyl isomerase G LOC100131202 0.097 PREDICTED: hypothetical protein LOC100131202 0.097 PREDICTED: hypothetical protein SFRS18 0.097 splicing factor, arginine/serine-rich 130 SFRS18 0.097 splicing factor, arginine/serine-rich 130 LOC100288837 0.095 PREDICTED: hypothetical protein XP_002343931, parti... RSRC2 0.092 arginine/serine-rich coiled-coil 2 isoform a LOC100134067 0.090 PREDICTED: hypothetical protein LOC100133599 0.090 PREDICTED: hypothetical protein LOC100133599 0.089 PREDICTED: hypothetical protein TCHH 0.080 trichohyalin SRRM2 0.080 splicing coactivator subunit SRm300 CROP 0.079 cisplatin resistance-associated overexpressed protei... CROP 0.079 cisplatin resistance-associated overexpressed protei... DDX46 0.072 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 SNRNP70 0.071 U1 small nuclear ribonucleoprotein 70 kDa DDX23 0.071 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 SFRS11 0.070 splicing factor, arginine/serine-rich 11 RSRC2 0.070 arginine/serine-rich coiled-coil 2 isoform b WDR60 0.070 WD repeat domain 60 CCDC55 0.069 coiled-coil domain containing 55 isoform 1 CDC2L1 0.069 cell division cycle 2-like 1 (PITSLRE proteins) isof...Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
