Guide to the Human Genome
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Name: SPRR2F Sequence: fasta or formatted (72aa) NCBI GI: 62945419
Description:

small proline-rich protein 2F

Referenced in:

Late Cornified Envelope Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.4          1           1
 C cysteine           18.1         13           1
 D aspartate           0.0          0           0
 E glutamate           2.8          2           1
 F phenylalanine       0.0          0           0
 G glycine             0.0          0           0
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine             11.1          8           1
 L leucine             0.0          0           0
 M methionine          1.4          1           1
 N asparagine          0.0          0           0
 P proline            36.1         26           3
 Q glutamine          16.7         12           4
 R arginine            0.0          0           0
 S serine              6.9          5           1
 T threonine           1.4          1           1
 V valine              2.8          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   small proline-rich protein 2F 
SPRR2E                0.962   small proline-rich protein 2E 
SPRR2D                0.917   small proline-rich protein 2D 
SPRR2B                0.910   small proline-rich protein 2B 
SPRR2A                0.891   small proline-rich protein 2A 
SPRR2G                0.737   small proline-rich protein 2G 
SPRR1A                0.256   small proline-rich protein 1A 
LCE5A                 0.244   late cornified envelope 5A 
LOC100292632          0.224   PREDICTED: hypothetical protein 
LCE1A                 0.224   late cornified envelope 1A 
LCE1F                 0.224   late cornified envelope 1F 
LCE1E                 0.224   late cornified envelope 1E 
LCE1C                 0.224   late cornified envelope 1C 
LELP1                 0.212   late cornified envelope-like proline-rich 1 
SPRR1B                0.212   small proline-rich protein 1B 
LCE2A                 0.212   late cornified envelope 2A 
SPRR4                 0.212   small proline-rich protein 4 
LCE2C                 0.205   late cornified envelope 2C 
LCE2B                 0.192   late cornified envelope 2B 
LCE2D                 0.186   late cornified envelope 2D 
LCE1B                 0.186   late cornified envelope 1B 
LCE1D                 0.186   late cornified envelope 1D 
LCE4A                 0.160   late cornified envelope 4A 
TBKBP1                0.154   TBK1 binding protein 1 
KRTAP10-11            0.154   keratin associated protein 10-11 
KRTAP10-12            0.147   keratin associated protein 10-12 
MYST3                 0.147   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.147   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.147   MYST histone acetyltransferase (monocytic leukemia)...
PRR12                 0.141   proline rich 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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