Guide to the Human Genome
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Name: LCE2C Sequence: fasta or formatted (110aa) NCBI GI: 30410047
Description:

late cornified envelope 2C

Referenced in:

Late Cornified Envelope Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.7          3           1
 C cysteine           20.0         22           2
 D aspartate           0.9          1           1
 E glutamate           1.8          2           1
 F phenylalanine       1.8          2           1
 G glycine            11.8         13           2
 H histidine           4.5          5           2
 I isoleucine          0.0          0           0
 K lysine              4.5          5           1
 L leucine             1.8          2           1
 M methionine          0.9          1           1
 N asparagine          0.9          1           1
 P proline            18.2         20           3
 Q glutamine           7.3          8           3
 R arginine            4.5          5           3
 S serine             16.4         18           2
 T threonine           0.9          1           1
 V valine              0.9          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   late cornified envelope 2C 
LCE2D                 0.963   late cornified envelope 2D 
LCE2B                 0.942   late cornified envelope 2B 
LCE2A                 0.840   late cornified envelope 2A 
LOC100292632          0.621   PREDICTED: hypothetical protein 
LCE1E                 0.621   late cornified envelope 1E 
LCE1F                 0.613   late cornified envelope 1F 
LCE5A                 0.605   late cornified envelope 5A 
LCE1C                 0.605   late cornified envelope 1C 
LCE1D                 0.601   late cornified envelope 1D 
LCE1B                 0.593   late cornified envelope 1B 
LCE1A                 0.584   late cornified envelope 1A 
LCE4A                 0.449   late cornified envelope 4A 
LCE3D                 0.383   late cornified envelope 3D 
LCE3E                 0.379   late cornified envelope 3E 
LCE3B                 0.358   late cornified envelope 3B 
LCE3C                 0.317   late cornified envelope 3C 
LCE3A                 0.309   late cornified envelope 3A 
SPRR2F                0.132   small proline-rich protein 2F 
SPRR2G                0.128   small proline-rich protein 2G 
SPRR2E                0.123   small proline-rich protein 2E 
CRCT1                 0.119   cysteine-rich C-terminal 1 
SPRR1B                0.119   small proline-rich protein 1B 
SPRR1A                0.119   small proline-rich protein 1A 
LELP1                 0.111   late cornified envelope-like proline-rich 1 
SPRR2A                0.111   small proline-rich protein 2A 
SPRR2B                0.111   small proline-rich protein 2B 
KRTAP17-1             0.103   keratin associated protein 17-1 
LOC732428             0.099   PREDICTED: keratin-associated protein 9-2-like 2-li...
KRTAP9-8              0.099   keratin associated protein 9.8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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