Guide to the Human Genome
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Name: LOC100131608 Sequence: fasta or formatted (277aa) NCBI GI: 169172807
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {237aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         11           2
 C cysteine            0.7          2           1
 D aspartate           5.8         16           2
 E glutamate           7.9         22           2
 F phenylalanine       2.9          8           1
 G glycine             5.4         15           1
 H histidine           2.9          8           1
 I isoleucine          4.7         13           2
 K lysine              2.2          6           2
 L leucine            12.6         35           5
 M methionine          2.5          7           1
 N asparagine          3.6         10           1
 P proline             7.9         22           2
 Q glutamine           8.3         23           2
 R arginine            5.8         16           2
 S serine              9.4         26           2
 T threonine           4.0         11           2
 V valine              6.1         17           1
 W tryptophan          0.7          2           1
 Y tyrosine            2.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131608          0.691   PREDICTED: hypothetical protein 
LOC100133251          0.691   PREDICTED: hypothetical protein 
LOC100288947          0.224   PREDICTED: hypothetical protein XP_002342866 
LOC100289814          0.196   PREDICTED: hypothetical protein XP_002348290 
FLJ46210              0.036   hypothetical protein LOC389152 
LOC729627             0.026   hypothetical protein LOC729627 
LOC389151             0.026   hypothetical protein LOC389151 
PTPN20A               0.019   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20A               0.019   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20B               0.019   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20B               0.019   protein tyrosine phosphatase, non-receptor type 20 i...
ARHGAP21              0.017   Rho GTPase activating protein 21 
PHAX                  0.015   RNA U, small nuclear RNA export adaptor (phosphoryla...
LOC645971             0.015   PREDICTED: similar to hCG2036794 
LOC645971             0.015   PREDICTED: similar to hCG2036794 
LOC645971             0.013   PREDICTED: similar to hCG2036794 
BRCA1                 0.011   breast cancer 1, early onset isoform 2 
BRCA1                 0.011   breast cancer 1, early onset isoform 5 
BRCA1                 0.011   breast cancer 1, early onset isoform 4 
BRCA1                 0.011   breast cancer 1, early onset isoform 3 
BRCA1                 0.011   breast cancer 1, early onset isoform 1 
HRASLS5               0.011   HRAS-like suppressor family, member 5 isoform 3 [Ho...
HRASLS5               0.011   HRAS-like suppressor family, member 5 isoform 1 [Hom...
POLR2E                0.011   DNA directed RNA polymerase II polypeptide E 
SOHLH1                0.009   spermatogenesis and oogenesis specific basic helix-...
SOHLH1                0.009   spermatogenesis and oogenesis specific basic helix-...
HRASLS5               0.009   HRAS-like suppressor family, member 5 isoform 2 [Ho...
MAP3K12               0.008   mitogen-activated protein kinase kinase kinase 12 [H...
AKAP12                0.008   A kinase (PRKA) anchor protein 12 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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