Guide to the Human Genome
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Search of human proteins with 61966693

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|61966693 immunoglobulin lambda-like polypeptide 3 [Homo
sapiens]
         (224 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|61966693 immunoglobulin lambda-like polypeptide 3 [Homo sapiens]   479   e-135
gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a p...   283   6e-77
gi|239752152 PREDICTED: hypothetical protein XP_002348153 [Homo ...   199   2e-51
gi|239752604 PREDICTED: similar to immunoglobulin lambda-like po...    61   7e-10
gi|169218140 PREDICTED: similar to major histocompatibility comp...    53   2e-07
gi|239740861 PREDICTED: similar to major histocompatibility comp...    53   2e-07
gi|239513953 PREDICTED: similar to major histocompatibility comp...    53   2e-07
gi|18426975 major histocompatibility complex, class II, DQ alpha...    51   9e-07
gi|169217612 PREDICTED: similar to major histocompatibility comp...    50   1e-06
gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]     50   1e-06
gi|239740747 PREDICTED: similar to major histocompatibility comp...    50   1e-06
gi|239740697 PREDICTED: similar to major histocompatibility comp...    50   1e-06
gi|17986005 major histocompatibility complex, class II, DR beta ...    50   2e-06
gi|113430811 PREDICTED: similar to major histocompatibility comp...    50   2e-06
gi|239740855 PREDICTED: similar to major histocompatibility comp...    50   2e-06
gi|239740853 PREDICTED: similar to major histocompatibility comp...    50   2e-06
gi|239740798 PREDICTED: similar to MHC class II antigen [Homo sa...    50   2e-06
gi|239750731 PREDICTED: hypothetical protein XP_002347518, parti...    50   2e-06
gi|169217452 PREDICTED: similar to HLA class II histocompatibili...    49   5e-06
gi|18641375 major histocompatibility complex, class II, DR beta ...    49   5e-06
gi|11095447 major histocompatibility complex, class II, DQ alpha...    48   6e-06
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ...    48   6e-06
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...    47   2e-05
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...    47   2e-05
gi|239740743 PREDICTED: similar to HLA class II histocompatibili...    47   2e-05
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...    47   2e-05
gi|239740693 PREDICTED: similar to HLA class II histocompatibili...    47   2e-05
gi|239740859 PREDICTED: similar to major histocompatibility comp...    46   3e-05
gi|239740857 PREDICTED: similar to major histocompatibility comp...    46   3e-05
gi|4504401 major histocompatibility complex, class II, DO alpha ...    46   3e-05

>gi|61966693 immunoglobulin lambda-like polypeptide 3 [Homo sapiens]
          Length = 224

 Score =  479 bits (1232), Expect = e-135
 Identities = 224/224 (100%), Positives = 224/224 (100%)

Query: 1   MCHSGSCWDLLGPALPSAPTASERGTHAGVTPRLWAAPASDREQAQRHYWGTLLGHWPPP 60
           MCHSGSCWDLLGPALPSAPTASERGTHAGVTPRLWAAPASDREQAQRHYWGTLLGHWPPP
Sbjct: 1   MCHSGSCWDLLGPALPSAPTASERGTHAGVTPRLWAAPASDREQAQRHYWGTLLGHWPPP 60

Query: 61  YPVPRSQPTHCSPVPLTPSRFLLQRGSWTGPGCWPRGFQSKHNSVKHVFGSGTQLTVLGQ 120
           YPVPRSQPTHCSPVPLTPSRFLLQRGSWTGPGCWPRGFQSKHNSVKHVFGSGTQLTVLGQ
Sbjct: 61  YPVPRSQPTHCSPVPLTPSRFLLQRGSWTGPGCWPRGFQSKHNSVKHVFGSGTQLTVLGQ 120

Query: 121 PKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQS 180
           PKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQS
Sbjct: 121 PKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQS 180

Query: 181 NSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTVAPAECS 224
           NSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTVAPAECS
Sbjct: 181 NSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTVAPAECS 224


>gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a
           precursor [Homo sapiens]
          Length = 213

 Score =  283 bits (725), Expect = 6e-77
 Identities = 137/145 (94%), Positives = 138/145 (95%)

Query: 80  RFLLQRGSWTGPGCWPRGFQSKHNSVKHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQA 139
           RFLLQRGSWTGP CWPRGFQSKHNSV HVFGSGTQLTVL QPKATPSVTLF PSSEELQA
Sbjct: 69  RFLLQRGSWTGPRCWPRGFQSKHNSVTHVFGSGTQLTVLSQPKATPSVTLFPPSSEELQA 128

Query: 140 NKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRS 199
           NKATLVCLMNDFY GILTVTWKADGTPITQGVEMTTPSKQSN+KY ASSYLSLTPEQWRS
Sbjct: 129 NKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRS 188

Query: 200 RRSYSCQVMHEGSTAEKTVAPAECS 224
           RRSYSCQVMHEGST EKTVAPAECS
Sbjct: 189 RRSYSCQVMHEGSTVEKTVAPAECS 213


>gi|239752152 PREDICTED: hypothetical protein XP_002348153 [Homo
           sapiens]
          Length = 264

 Score =  199 bits (505), Expect = 2e-51
 Identities = 99/138 (71%), Positives = 107/138 (77%), Gaps = 13/138 (9%)

Query: 87  SWTGPGCWPRGFQSKHNSVKHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVC 146
           S  GP CW             VFG GT+LTVLGQPKA PSVTLF PSSEELQANKATLVC
Sbjct: 140 SLNGPTCW-------------VFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVC 186

Query: 147 LMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQ 206
           L++DFY G +TV WKAD +P+  GVE TTPSKQSN+KY ASSYLSLTPEQW+S RSYSCQ
Sbjct: 187 LISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQ 246

Query: 207 VMHEGSTAEKTVAPAECS 224
           V HEGST EKTVAP ECS
Sbjct: 247 VTHEGSTVEKTVAPTECS 264


>gi|239752604 PREDICTED: similar to immunoglobulin lambda-like
           polypeptide 1 [Homo sapiens]
          Length = 490

 Score = 61.2 bits (147), Expect = 7e-10
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 119 GQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSK 178
           GQP+  P V    PS EE+  N+ +L CL+  FY   + V W+++G P     + T P  
Sbjct: 384 GQPRE-PQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQP-ENNYKTTPPML 441

Query: 179 QSNSKYMASSYLSLTPEQWRSRRSYSCQVMHE 210
            S+  +   S L++   +W+    +SC VMHE
Sbjct: 442 DSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHE 473



 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 9/158 (5%)

Query: 68  PTHCSPVPLTPSRFLLQRGSWTGPGCWPRGFQSKHNSVKHVFGSGTQLTVLGQPKATPSV 127
           P  C+P    P  + L   SW       RG  +    +     S    ++    K  PSV
Sbjct: 117 PARCTPNAREPRHWTLPGPSWIDKN---RGASAPWAQLCPTPRSHGTTSLAASTKG-PSV 172

Query: 128 TLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKYMAS 187
               P S     + A L CL+ D++   +TV+W +    +T GV       QS+  Y  S
Sbjct: 173 FPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGA--LTSGVHTFPAVLQSSGLYSLS 230

Query: 188 SYLSLTPEQWRSRRSYSCQVMHEGST--AEKTVAPAEC 223
           S +++T   +   ++Y+C V H+ S    +KTV    C
Sbjct: 231 SVVTVTSSNF-GTQTYTCNVDHKPSNTKVDKTVERKCC 267



 Score = 37.0 bits (84), Expect = 0.014
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 121 PKATPSVTLFLPSSEELQANKAT--LVCLMNDFYLGILTV--TWKADGTPITQGVEMTTP 176
           P A PSV LF P  ++      T  + C++ D       V   W  DG  +    +    
Sbjct: 277 PVAGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVQFNWYVDGMEV-HNAKTKPR 335

Query: 177 SKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTA--EKTVA 219
            +Q NS +   S L++  + W + + Y C+V ++G  A  EKT++
Sbjct: 336 EEQFNSTFRVVSVLTVVHQDWLNGKEYKCKVSNKGLPAPIEKTIS 380


>gi|169218140 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1, partial [Homo sapiens]
          Length = 153

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184
           P VT+F  S   L      L+CL+++ +  ++ +TW ++G  +T+GV  T+   +S+  +
Sbjct: 11  PEVTVFSKSPVTL-GQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 69

Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211
              SYL+L P    +  SY C+V H G
Sbjct: 70  FKISYLTLLPS---AEESYDCKVEHWG 93


>gi|239740861 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184
           P VT+F  S   L      L+CL+++ +  ++ +TW ++G  +T+GV  T+   +S+  +
Sbjct: 112 PEVTVFSKSPVTL-GQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 170

Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211
              SYL+L P    +  SY C+V H G
Sbjct: 171 FKISYLTLLPS---AEESYDCKVEHWG 194


>gi|239513953 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 4/87 (4%)

Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184
           P VT+F  S   L      L+CL+++ +  ++ +TW ++G  +T+GV  T+   +S+  +
Sbjct: 112 PEVTVFSKSPVTL-GQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 170

Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211
              SYL+L P    +  SY C+V H G
Sbjct: 171 FKISYLTLLPS---AEESYDCKVEHWG 194


>gi|18426975 major histocompatibility complex, class II, DQ alpha 1
           precursor [Homo sapiens]
          Length = 255

 Score = 50.8 bits (120), Expect = 9e-07
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184
           P VT+F  S   L     TL+CL+++ +  ++ +TW ++G  +T+GV  T+   +S+  +
Sbjct: 113 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSF 171

Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211
              SYL+  P    +   Y C+V H G
Sbjct: 172 FKISYLTFLPS---ADEIYDCKVEHWG 195


>gi|169217612 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 isoform 1 [Homo sapiens]
          Length = 254

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184
           P VT+F  S   L     TL+CL+++ +  ++ +TW ++G  +T+GV  T+   +S+  +
Sbjct: 112 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 170

Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211
              SYL+  P    +   Y C+V H G
Sbjct: 171 FKISYLTFLPS---ADEIYDCKVEHWG 194


>gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens]
          Length = 255

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184
           P VT+F  S   L     TL+CL+++ +  ++ +TW ++G  +T+GV  T+   +S+  +
Sbjct: 113 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 171

Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211
              SYL+  P    +   Y C+V H G
Sbjct: 172 FKISYLTFLPS---ADEIYDCKVEHWG 195


>gi|239740747 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184
           P VT+F  S   L     TL+CL+++ +  ++ +TW ++G  +T+GV  T+   +S+  +
Sbjct: 112 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 170

Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211
              SYL+  P    +   Y C+V H G
Sbjct: 171 FKISYLTFLPS---ADEIYDCKVEHWG 194


>gi|239740697 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 254

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%)

Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184
           P VT+F  S   L     TL+CL+++ +  ++ +TW ++G  +T+GV  T+   +S+  +
Sbjct: 112 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 170

Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211
              SYL+  P    +   Y C+V H G
Sbjct: 171 FKISYLTFLPS---ADEIYDCKVEHWG 194


>gi|17986005 major histocompatibility complex, class II, DR beta 3
           precursor [Homo sapiens]
          Length = 266

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 103 NSVKHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKA 162
           N  +H +G G   TV  Q +  P VT++   ++ LQ +   LVC ++ FY G + V W  
Sbjct: 106 NYCRHNYGVGESFTV--QRRVHPQVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFR 162

Query: 163 DGTPITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218
           +G     GV  T   +  +  +     L   P   RS   Y+CQV H   T+  TV
Sbjct: 163 NGQEEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSALTV 215


>gi|113430811 PREDICTED: similar to major histocompatibility
           complex, class II, DQ alpha 1 [Homo sapiens]
          Length = 255

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184
           P VT+F  S   L     TL+CL+++ +  ++ +TW ++G  +T+GV  T+   +S+  +
Sbjct: 113 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 171

Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211
              SYL+  P        Y C+V H G
Sbjct: 172 FKISYLTFLPS---DDEIYDCKVEHWG 195


>gi|239740855 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 103 NSVKHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKA 162
           N  +H +G G   TV  Q +  P VT++   ++ LQ +   LVC ++ FY G + V W  
Sbjct: 107 NYCRHNYGVGESFTV--QRRVHPQVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFR 163

Query: 163 DGTPITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218
           +G     GV  T   +  +  +     L   P   RS   Y+CQV H   T+  TV
Sbjct: 164 NGQEEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSPLTV 216


>gi|239740853 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 103 NSVKHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKA 162
           N  +H +G G   TV  Q +  P VT++   ++ LQ +   LVC ++ FY G + V W  
Sbjct: 106 NYCRHNYGVGESFTV--QRRVHPQVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFR 162

Query: 163 DGTPITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218
           +G     GV  T   +  +  +     L   P   RS   Y+CQV H   T+  TV
Sbjct: 163 NGQEEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSPLTV 215


>gi|239740798 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 255

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184
           P VT+F  S   L     TL+CL+++ +  ++ +TW ++G  +T+GV  T+   +S+  +
Sbjct: 113 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 171

Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211
              SYL+  P        Y C+V H G
Sbjct: 172 FKISYLTFLPS---DDEIYDCKVEHWG 195


>gi|239750731 PREDICTED: hypothetical protein XP_002347518, partial
           [Homo sapiens]
          Length = 214

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 1/102 (0%)

Query: 121 PKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTT-PSKQ 179
           P+A P V  F         +K TL CL+ +F    ++V W  +   +      TT P K 
Sbjct: 106 PRAAPEVYAFATPEWLGSRDKRTLTCLIQNFMPEDISVQWLHNEVQLPDAQHSTTQPRKT 165

Query: 180 SNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTVAPA 221
             S +   S L +T  +W  +  + C+ +HE ++  +TV  A
Sbjct: 166 KGSGFFIFSRLEVTRAEWEQKDEFICRAVHEAASPSQTVQRA 207



 Score = 33.9 bits (76), Expect = 0.12
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 126 SVTLFLPSSEELQANKA-TLVCLMNDFYLGILTV--TW-KADGTPITQGVEMTTPSKQSN 181
           S  L  PS  +L   K+ T+ CL+ D      TV  TW +A G P+          KQ N
Sbjct: 4   SAYLSRPSPFDLFIRKSPTITCLVVDLAPSKWTVNLTWSRASGKPVNHSTRKE--EKQRN 61

Query: 182 SKYMASSYLSLTPEQWRSRRSYSCQVMH 209
                +S L +    W    +Y C+V H
Sbjct: 62  GTLTVTSTLPVGTRDWIEGETYQCRVTH 89


>gi|169217452 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-4 beta chain, partial [Homo sapiens]
          Length = 223

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 6/109 (5%)

Query: 106 KHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGT 165
           +H +G G   TV  Q +  P VT++   ++ LQ +   LVC +N FY G + V W  +G 
Sbjct: 121 RHNYGVGESFTV--QRRVYPEVTVYPAKTQPLQHHNL-LVCSVNGFYPGSIEVRWFRNGQ 177

Query: 166 PITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTA 214
               GV  T   +  +  +     L   P   RS   Y+CQV H   T+
Sbjct: 178 EEKTGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSLTS 223


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score = 48.5 bits (114), Expect = 5e-06
 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 106 KHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGT 165
           +H +G G   TV  Q +  P VT++   ++ LQ +   LVC +N FY G + V W  +  
Sbjct: 109 RHNYGVGESFTV--QRRVEPKVTVYPARTQTLQHHNL-LVCSVNGFYPGSIEVRWFRNSQ 165

Query: 166 PITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218
               GV  T   +  +  +     L   P   RS   Y+CQV H   T+  TV
Sbjct: 166 EEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSPLTV 215


>gi|11095447 major histocompatibility complex, class II, DQ alpha 2
           [Homo sapiens]
          Length = 255

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 4/87 (4%)

Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184
           P VT+F      L     TL+CL+++ +  ++ +TW ++G  +T+GV  T+   +S+  +
Sbjct: 113 PEVTVFSKFPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 171

Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211
              SYL+  P    +   Y C+V H G
Sbjct: 172 FKISYLTFLPS---ADEIYDCKVEHWG 195


>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
           sapiens]
          Length = 266

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 106 KHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGT 165
           +H +G G   TV  Q +  P VT++   ++ LQ +   LVC ++ FY G + V W  +G 
Sbjct: 109 RHNYGVGESFTV--QRRVHPKVTVYPSKTQPLQHHNL-LVCSVSGFYPGSIEVRWFRNGQ 165

Query: 166 PITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218
               GV  T      +  +     L   P   RS   Y+CQV H   T+  TV
Sbjct: 166 EEKTGVVSTGLIHNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSPLTV 215


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 106 KHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGT 165
           +H +G G   TV  Q +  P VT++   ++ LQ +   LVC ++ FY G + V W  +G 
Sbjct: 109 RHNYGVGESFTV--QRRVHPEVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFRNGQ 165

Query: 166 PITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218
               GV  T   +  +  +     L   P   RS   Y+CQV H    +  TV
Sbjct: 166 EEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVMSPLTV 215


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 106 KHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGT 165
           +H +G G   TV  Q +  P VT++   ++ LQ +   LVC ++ FY G + V W  +G 
Sbjct: 109 RHNYGVGESFTV--QRRVHPEVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFRNGQ 165

Query: 166 PITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218
               GV  T   +  +  +     L   P   RS   Y+CQV H    +  TV
Sbjct: 166 EEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVMSPLTV 215


>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 106 KHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGT 165
           +H +G G   TV  Q +  P VT++   ++ LQ +   LVC ++ FY G + V W  +G 
Sbjct: 107 RHNYGVGESFTV--QRRVHPEVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFRNGQ 163

Query: 166 PITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218
               GV  T   +  +  +     L   P   RS   Y+CQV H    +  TV
Sbjct: 164 EEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVMSPLTV 213


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 106 KHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGT 165
           +H +G G   TV  Q +  P VT++   ++ LQ +   LVC ++ FY G + V W  +G 
Sbjct: 109 RHNYGVGESFTV--QRRVHPEVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFRNGQ 165

Query: 166 PITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218
               GV  T   +  +  +     L   P   RS   Y+CQV H    +  TV
Sbjct: 166 EEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVMSPLTV 215


>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 106 KHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGT 165
           +H +G G   TV  Q +  P VT++   ++ LQ +   LVC ++ FY G + V W  +G 
Sbjct: 107 RHNYGVGESFTV--QRRVHPEVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFRNGQ 163

Query: 166 PITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218
               GV  T   +  +  +     L   P   RS   Y+CQV H    +  TV
Sbjct: 164 EEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVMSPLTV 213


>gi|239740859 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 103 NSVKHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKA 162
           N  +H +G     TV  Q +  P VT++   ++ LQ +   LVC ++ FY G + V W  
Sbjct: 107 NYCRHNYGVVESFTV--QRRVHPKVTVYPSKTQPLQHHNL-LVCSVSGFYPGSIEVRWFR 163

Query: 163 DGTPITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218
           +G     GV  T      +  +     L   P   RS   Y+CQV H   T+  TV
Sbjct: 164 NGQEEKTGVVSTGLIHNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSPLTV 216


>gi|239740857 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 6/116 (5%)

Query: 103 NSVKHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKA 162
           N  +H +G     TV  Q +  P VT++   ++ LQ +   LVC ++ FY G + V W  
Sbjct: 106 NYCRHNYGVVESFTV--QRRVHPKVTVYPSKTQPLQHHNL-LVCSVSGFYPGSIEVRWFR 162

Query: 163 DGTPITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218
           +G     GV  T      +  +     L   P   RS   Y+CQV H   T+  TV
Sbjct: 163 NGQEEKTGVVSTGLIHNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSPLTV 215


>gi|4504401 major histocompatibility complex, class II, DO alpha
           precursor [Homo sapiens]
          Length = 250

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 4/90 (4%)

Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184
           P VT+ LP S         L+C++++ +  ++ +TW  +G  +T+GV  T+   Q +  +
Sbjct: 113 PRVTV-LPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLF 171

Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEGSTA 214
               YL   P    +   Y CQV H G  A
Sbjct: 172 RKFHYLPFVPS---AEDVYDCQVEHWGLDA 198


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.129    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,140,360
Number of Sequences: 37866
Number of extensions: 622690
Number of successful extensions: 2755
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 98
Number of HSP's that attempted gapping in prelim test: 2623
Number of HSP's gapped (non-prelim): 229
length of query: 224
length of database: 18,247,518
effective HSP length: 98
effective length of query: 126
effective length of database: 14,536,650
effective search space: 1831617900
effective search space used: 1831617900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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