BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|61966693 immunoglobulin lambda-like polypeptide 3 [Homo sapiens] (224 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|61966693 immunoglobulin lambda-like polypeptide 3 [Homo sapiens] 479 e-135 gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a p... 283 6e-77 gi|239752152 PREDICTED: hypothetical protein XP_002348153 [Homo ... 199 2e-51 gi|239752604 PREDICTED: similar to immunoglobulin lambda-like po... 61 7e-10 gi|169218140 PREDICTED: similar to major histocompatibility comp... 53 2e-07 gi|239740861 PREDICTED: similar to major histocompatibility comp... 53 2e-07 gi|239513953 PREDICTED: similar to major histocompatibility comp... 53 2e-07 gi|18426975 major histocompatibility complex, class II, DQ alpha... 51 9e-07 gi|169217612 PREDICTED: similar to major histocompatibility comp... 50 1e-06 gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens] 50 1e-06 gi|239740747 PREDICTED: similar to major histocompatibility comp... 50 1e-06 gi|239740697 PREDICTED: similar to major histocompatibility comp... 50 1e-06 gi|17986005 major histocompatibility complex, class II, DR beta ... 50 2e-06 gi|113430811 PREDICTED: similar to major histocompatibility comp... 50 2e-06 gi|239740855 PREDICTED: similar to major histocompatibility comp... 50 2e-06 gi|239740853 PREDICTED: similar to major histocompatibility comp... 50 2e-06 gi|239740798 PREDICTED: similar to MHC class II antigen [Homo sa... 50 2e-06 gi|239750731 PREDICTED: hypothetical protein XP_002347518, parti... 50 2e-06 gi|169217452 PREDICTED: similar to HLA class II histocompatibili... 49 5e-06 gi|18641375 major histocompatibility complex, class II, DR beta ... 49 5e-06 gi|11095447 major histocompatibility complex, class II, DQ alpha... 48 6e-06 gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ... 48 6e-06 gi|239748785 PREDICTED: similar to HLA class II histocompatibili... 47 2e-05 gi|239740745 PREDICTED: similar to HLA class II histocompatibili... 47 2e-05 gi|239740743 PREDICTED: similar to HLA class II histocompatibili... 47 2e-05 gi|239740695 PREDICTED: similar to HLA class II histocompatibili... 47 2e-05 gi|239740693 PREDICTED: similar to HLA class II histocompatibili... 47 2e-05 gi|239740859 PREDICTED: similar to major histocompatibility comp... 46 3e-05 gi|239740857 PREDICTED: similar to major histocompatibility comp... 46 3e-05 gi|4504401 major histocompatibility complex, class II, DO alpha ... 46 3e-05 >gi|61966693 immunoglobulin lambda-like polypeptide 3 [Homo sapiens] Length = 224 Score = 479 bits (1232), Expect = e-135 Identities = 224/224 (100%), Positives = 224/224 (100%) Query: 1 MCHSGSCWDLLGPALPSAPTASERGTHAGVTPRLWAAPASDREQAQRHYWGTLLGHWPPP 60 MCHSGSCWDLLGPALPSAPTASERGTHAGVTPRLWAAPASDREQAQRHYWGTLLGHWPPP Sbjct: 1 MCHSGSCWDLLGPALPSAPTASERGTHAGVTPRLWAAPASDREQAQRHYWGTLLGHWPPP 60 Query: 61 YPVPRSQPTHCSPVPLTPSRFLLQRGSWTGPGCWPRGFQSKHNSVKHVFGSGTQLTVLGQ 120 YPVPRSQPTHCSPVPLTPSRFLLQRGSWTGPGCWPRGFQSKHNSVKHVFGSGTQLTVLGQ Sbjct: 61 YPVPRSQPTHCSPVPLTPSRFLLQRGSWTGPGCWPRGFQSKHNSVKHVFGSGTQLTVLGQ 120 Query: 121 PKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQS 180 PKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQS Sbjct: 121 PKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQS 180 Query: 181 NSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTVAPAECS 224 NSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTVAPAECS Sbjct: 181 NSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTVAPAECS 224 >gi|13399298 immunoglobulin lambda-like polypeptide 1 isoform a precursor [Homo sapiens] Length = 213 Score = 283 bits (725), Expect = 6e-77 Identities = 137/145 (94%), Positives = 138/145 (95%) Query: 80 RFLLQRGSWTGPGCWPRGFQSKHNSVKHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQA 139 RFLLQRGSWTGP CWPRGFQSKHNSV HVFGSGTQLTVL QPKATPSVTLF PSSEELQA Sbjct: 69 RFLLQRGSWTGPRCWPRGFQSKHNSVTHVFGSGTQLTVLSQPKATPSVTLFPPSSEELQA 128 Query: 140 NKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRS 199 NKATLVCLMNDFY GILTVTWKADGTPITQGVEMTTPSKQSN+KY ASSYLSLTPEQWRS Sbjct: 129 NKATLVCLMNDFYPGILTVTWKADGTPITQGVEMTTPSKQSNNKYAASSYLSLTPEQWRS 188 Query: 200 RRSYSCQVMHEGSTAEKTVAPAECS 224 RRSYSCQVMHEGST EKTVAPAECS Sbjct: 189 RRSYSCQVMHEGSTVEKTVAPAECS 213 >gi|239752152 PREDICTED: hypothetical protein XP_002348153 [Homo sapiens] Length = 264 Score = 199 bits (505), Expect = 2e-51 Identities = 99/138 (71%), Positives = 107/138 (77%), Gaps = 13/138 (9%) Query: 87 SWTGPGCWPRGFQSKHNSVKHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVC 146 S GP CW VFG GT+LTVLGQPKA PSVTLF PSSEELQANKATLVC Sbjct: 140 SLNGPTCW-------------VFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVC 186 Query: 147 LMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQ 206 L++DFY G +TV WKAD +P+ GVE TTPSKQSN+KY ASSYLSLTPEQW+S RSYSCQ Sbjct: 187 LISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQ 246 Query: 207 VMHEGSTAEKTVAPAECS 224 V HEGST EKTVAP ECS Sbjct: 247 VTHEGSTVEKTVAPTECS 264 >gi|239752604 PREDICTED: similar to immunoglobulin lambda-like polypeptide 1 [Homo sapiens] Length = 490 Score = 61.2 bits (147), Expect = 7e-10 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 2/92 (2%) Query: 119 GQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSK 178 GQP+ P V PS EE+ N+ +L CL+ FY + V W+++G P + T P Sbjct: 384 GQPRE-PQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQP-ENNYKTTPPML 441 Query: 179 QSNSKYMASSYLSLTPEQWRSRRSYSCQVMHE 210 S+ + S L++ +W+ +SC VMHE Sbjct: 442 DSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHE 473 Score = 48.1 bits (113), Expect = 6e-06 Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 9/158 (5%) Query: 68 PTHCSPVPLTPSRFLLQRGSWTGPGCWPRGFQSKHNSVKHVFGSGTQLTVLGQPKATPSV 127 P C+P P + L SW RG + + S ++ K PSV Sbjct: 117 PARCTPNAREPRHWTLPGPSWIDKN---RGASAPWAQLCPTPRSHGTTSLAASTKG-PSV 172 Query: 128 TLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKYMAS 187 P S + A L CL+ D++ +TV+W + +T GV QS+ Y S Sbjct: 173 FPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGA--LTSGVHTFPAVLQSSGLYSLS 230 Query: 188 SYLSLTPEQWRSRRSYSCQVMHEGST--AEKTVAPAEC 223 S +++T + ++Y+C V H+ S +KTV C Sbjct: 231 SVVTVTSSNF-GTQTYTCNVDHKPSNTKVDKTVERKCC 267 Score = 37.0 bits (84), Expect = 0.014 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 7/105 (6%) Query: 121 PKATPSVTLFLPSSEELQANKAT--LVCLMNDFYLGILTV--TWKADGTPITQGVEMTTP 176 P A PSV LF P ++ T + C++ D V W DG + + Sbjct: 277 PVAGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVQFNWYVDGMEV-HNAKTKPR 335 Query: 177 SKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTA--EKTVA 219 +Q NS + S L++ + W + + Y C+V ++G A EKT++ Sbjct: 336 EEQFNSTFRVVSVLTVVHQDWLNGKEYKCKVSNKGLPAPIEKTIS 380 >gi|169218140 PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1, partial [Homo sapiens] Length = 153 Score = 52.8 bits (125), Expect = 2e-07 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184 P VT+F S L L+CL+++ + ++ +TW ++G +T+GV T+ +S+ + Sbjct: 11 PEVTVFSKSPVTL-GQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 69 Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211 SYL+L P + SY C+V H G Sbjct: 70 FKISYLTLLPS---AEESYDCKVEHWG 93 >gi|239740861 PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1 [Homo sapiens] Length = 254 Score = 52.8 bits (125), Expect = 2e-07 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184 P VT+F S L L+CL+++ + ++ +TW ++G +T+GV T+ +S+ + Sbjct: 112 PEVTVFSKSPVTL-GQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 170 Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211 SYL+L P + SY C+V H G Sbjct: 171 FKISYLTLLPS---AEESYDCKVEHWG 194 >gi|239513953 PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1 [Homo sapiens] Length = 254 Score = 52.8 bits (125), Expect = 2e-07 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 4/87 (4%) Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184 P VT+F S L L+CL+++ + ++ +TW ++G +T+GV T+ +S+ + Sbjct: 112 PEVTVFSKSPVTL-GQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 170 Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211 SYL+L P + SY C+V H G Sbjct: 171 FKISYLTLLPS---AEESYDCKVEHWG 194 >gi|18426975 major histocompatibility complex, class II, DQ alpha 1 precursor [Homo sapiens] Length = 255 Score = 50.8 bits (120), Expect = 9e-07 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%) Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184 P VT+F S L TL+CL+++ + ++ +TW ++G +T+GV T+ +S+ + Sbjct: 113 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSF 171 Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211 SYL+ P + Y C+V H G Sbjct: 172 FKISYLTFLPS---ADEIYDCKVEHWG 195 >gi|169217612 PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1 isoform 1 [Homo sapiens] Length = 254 Score = 50.4 bits (119), Expect = 1e-06 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%) Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184 P VT+F S L TL+CL+++ + ++ +TW ++G +T+GV T+ +S+ + Sbjct: 112 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 170 Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211 SYL+ P + Y C+V H G Sbjct: 171 FKISYLTFLPS---ADEIYDCKVEHWG 194 >gi|239740916 PREDICTED: similar to MHC HLA-DQ alpha [Homo sapiens] Length = 255 Score = 50.4 bits (119), Expect = 1e-06 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%) Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184 P VT+F S L TL+CL+++ + ++ +TW ++G +T+GV T+ +S+ + Sbjct: 113 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 171 Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211 SYL+ P + Y C+V H G Sbjct: 172 FKISYLTFLPS---ADEIYDCKVEHWG 195 >gi|239740747 PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1 [Homo sapiens] Length = 254 Score = 50.4 bits (119), Expect = 1e-06 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%) Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184 P VT+F S L TL+CL+++ + ++ +TW ++G +T+GV T+ +S+ + Sbjct: 112 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 170 Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211 SYL+ P + Y C+V H G Sbjct: 171 FKISYLTFLPS---ADEIYDCKVEHWG 194 >gi|239740697 PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1 [Homo sapiens] Length = 254 Score = 50.4 bits (119), Expect = 1e-06 Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 4/87 (4%) Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184 P VT+F S L TL+CL+++ + ++ +TW ++G +T+GV T+ +S+ + Sbjct: 112 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 170 Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211 SYL+ P + Y C+V H G Sbjct: 171 FKISYLTFLPS---ADEIYDCKVEHWG 194 >gi|17986005 major histocompatibility complex, class II, DR beta 3 precursor [Homo sapiens] Length = 266 Score = 50.1 bits (118), Expect = 2e-06 Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 6/116 (5%) Query: 103 NSVKHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKA 162 N +H +G G TV Q + P VT++ ++ LQ + LVC ++ FY G + V W Sbjct: 106 NYCRHNYGVGESFTV--QRRVHPQVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFR 162 Query: 163 DGTPITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218 +G GV T + + + L P RS Y+CQV H T+ TV Sbjct: 163 NGQEEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSALTV 215 >gi|113430811 PREDICTED: similar to major histocompatibility complex, class II, DQ alpha 1 [Homo sapiens] Length = 255 Score = 50.1 bits (118), Expect = 2e-06 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%) Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184 P VT+F S L TL+CL+++ + ++ +TW ++G +T+GV T+ +S+ + Sbjct: 113 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 171 Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211 SYL+ P Y C+V H G Sbjct: 172 FKISYLTFLPS---DDEIYDCKVEHWG 195 >gi|239740855 PREDICTED: similar to major histocompatibility complex, class II, DR beta 3 isoform 1 [Homo sapiens] Length = 267 Score = 50.1 bits (118), Expect = 2e-06 Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 6/116 (5%) Query: 103 NSVKHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKA 162 N +H +G G TV Q + P VT++ ++ LQ + LVC ++ FY G + V W Sbjct: 107 NYCRHNYGVGESFTV--QRRVHPQVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFR 163 Query: 163 DGTPITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218 +G GV T + + + L P RS Y+CQV H T+ TV Sbjct: 164 NGQEEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSPLTV 216 >gi|239740853 PREDICTED: similar to major histocompatibility complex, class II, DR beta 3 isoform 2 [Homo sapiens] Length = 266 Score = 50.1 bits (118), Expect = 2e-06 Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 6/116 (5%) Query: 103 NSVKHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKA 162 N +H +G G TV Q + P VT++ ++ LQ + LVC ++ FY G + V W Sbjct: 106 NYCRHNYGVGESFTV--QRRVHPQVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFR 162 Query: 163 DGTPITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218 +G GV T + + + L P RS Y+CQV H T+ TV Sbjct: 163 NGQEEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSPLTV 215 >gi|239740798 PREDICTED: similar to MHC class II antigen [Homo sapiens] Length = 255 Score = 50.1 bits (118), Expect = 2e-06 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%) Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184 P VT+F S L TL+CL+++ + ++ +TW ++G +T+GV T+ +S+ + Sbjct: 113 PEVTVFSKSPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 171 Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211 SYL+ P Y C+V H G Sbjct: 172 FKISYLTFLPS---DDEIYDCKVEHWG 195 >gi|239750731 PREDICTED: hypothetical protein XP_002347518, partial [Homo sapiens] Length = 214 Score = 49.7 bits (117), Expect = 2e-06 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 1/102 (0%) Query: 121 PKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTT-PSKQ 179 P+A P V F +K TL CL+ +F ++V W + + TT P K Sbjct: 106 PRAAPEVYAFATPEWLGSRDKRTLTCLIQNFMPEDISVQWLHNEVQLPDAQHSTTQPRKT 165 Query: 180 SNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTVAPA 221 S + S L +T +W + + C+ +HE ++ +TV A Sbjct: 166 KGSGFFIFSRLEVTRAEWEQKDEFICRAVHEAASPSQTVQRA 207 Score = 33.9 bits (76), Expect = 0.12 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 6/88 (6%) Query: 126 SVTLFLPSSEELQANKA-TLVCLMNDFYLGILTV--TW-KADGTPITQGVEMTTPSKQSN 181 S L PS +L K+ T+ CL+ D TV TW +A G P+ KQ N Sbjct: 4 SAYLSRPSPFDLFIRKSPTITCLVVDLAPSKWTVNLTWSRASGKPVNHSTRKE--EKQRN 61 Query: 182 SKYMASSYLSLTPEQWRSRRSYSCQVMH 209 +S L + W +Y C+V H Sbjct: 62 GTLTVTSTLPVGTRDWIEGETYQCRVTH 89 >gi|169217452 PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-4 beta chain, partial [Homo sapiens] Length = 223 Score = 48.5 bits (114), Expect = 5e-06 Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 6/109 (5%) Query: 106 KHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGT 165 +H +G G TV Q + P VT++ ++ LQ + LVC +N FY G + V W +G Sbjct: 121 RHNYGVGESFTV--QRRVYPEVTVYPAKTQPLQHHNL-LVCSVNGFYPGSIEVRWFRNGQ 177 Query: 166 PITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTA 214 GV T + + + L P RS Y+CQV H T+ Sbjct: 178 EEKTGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSLTS 223 >gi|18641375 major histocompatibility complex, class II, DR beta 5 precursor [Homo sapiens] Length = 266 Score = 48.5 bits (114), Expect = 5e-06 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 6/113 (5%) Query: 106 KHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGT 165 +H +G G TV Q + P VT++ ++ LQ + LVC +N FY G + V W + Sbjct: 109 RHNYGVGESFTV--QRRVEPKVTVYPARTQTLQHHNL-LVCSVNGFYPGSIEVRWFRNSQ 165 Query: 166 PITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218 GV T + + + L P RS Y+CQV H T+ TV Sbjct: 166 EEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSPLTV 215 >gi|11095447 major histocompatibility complex, class II, DQ alpha 2 [Homo sapiens] Length = 255 Score = 48.1 bits (113), Expect = 6e-06 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 4/87 (4%) Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184 P VT+F L TL+CL+++ + ++ +TW ++G +T+GV T+ +S+ + Sbjct: 113 PEVTVFSKFPVTL-GQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSF 171 Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEG 211 SYL+ P + Y C+V H G Sbjct: 172 FKISYLTFLPS---ADEIYDCKVEHWG 195 >gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo sapiens] Length = 266 Score = 48.1 bits (113), Expect = 6e-06 Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 6/113 (5%) Query: 106 KHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGT 165 +H +G G TV Q + P VT++ ++ LQ + LVC ++ FY G + V W +G Sbjct: 109 RHNYGVGESFTV--QRRVHPKVTVYPSKTQPLQHHNL-LVCSVSGFYPGSIEVRWFRNGQ 165 Query: 166 PITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218 GV T + + L P RS Y+CQV H T+ TV Sbjct: 166 EEKTGVVSTGLIHNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSPLTV 215 >gi|239748785 PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-9 beta chain [Homo sapiens] Length = 266 Score = 46.6 bits (109), Expect = 2e-05 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 6/113 (5%) Query: 106 KHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGT 165 +H +G G TV Q + P VT++ ++ LQ + LVC ++ FY G + V W +G Sbjct: 109 RHNYGVGESFTV--QRRVHPEVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFRNGQ 165 Query: 166 PITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218 GV T + + + L P RS Y+CQV H + TV Sbjct: 166 EEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVMSPLTV 215 >gi|239740745 PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-7 beta chain isoform 1 [Homo sapiens] Length = 266 Score = 46.6 bits (109), Expect = 2e-05 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 6/113 (5%) Query: 106 KHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGT 165 +H +G G TV Q + P VT++ ++ LQ + LVC ++ FY G + V W +G Sbjct: 109 RHNYGVGESFTV--QRRVHPEVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFRNGQ 165 Query: 166 PITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218 GV T + + + L P RS Y+CQV H + TV Sbjct: 166 EEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVMSPLTV 215 >gi|239740743 PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-7 beta chain isoform 2 [Homo sapiens] Length = 264 Score = 46.6 bits (109), Expect = 2e-05 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 6/113 (5%) Query: 106 KHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGT 165 +H +G G TV Q + P VT++ ++ LQ + LVC ++ FY G + V W +G Sbjct: 107 RHNYGVGESFTV--QRRVHPEVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFRNGQ 163 Query: 166 PITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218 GV T + + + L P RS Y+CQV H + TV Sbjct: 164 EEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVMSPLTV 213 >gi|239740695 PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-7 beta chain isoform 1 [Homo sapiens] Length = 266 Score = 46.6 bits (109), Expect = 2e-05 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 6/113 (5%) Query: 106 KHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGT 165 +H +G G TV Q + P VT++ ++ LQ + LVC ++ FY G + V W +G Sbjct: 109 RHNYGVGESFTV--QRRVHPEVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFRNGQ 165 Query: 166 PITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218 GV T + + + L P RS Y+CQV H + TV Sbjct: 166 EEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVMSPLTV 215 >gi|239740693 PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-7 beta chain isoform 2 [Homo sapiens] Length = 264 Score = 46.6 bits (109), Expect = 2e-05 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 6/113 (5%) Query: 106 KHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGT 165 +H +G G TV Q + P VT++ ++ LQ + LVC ++ FY G + V W +G Sbjct: 107 RHNYGVGESFTV--QRRVHPEVTVYPAKTQPLQHHNL-LVCSVSGFYPGSIEVRWFRNGQ 163 Query: 166 PITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218 GV T + + + L P RS Y+CQV H + TV Sbjct: 164 EEKAGVVSTGLIQNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVMSPLTV 213 >gi|239740859 PREDICTED: similar to major histocompatibility complex, class II, DR beta 3 isoform 1 [Homo sapiens] Length = 267 Score = 45.8 bits (107), Expect = 3e-05 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 6/116 (5%) Query: 103 NSVKHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKA 162 N +H +G TV Q + P VT++ ++ LQ + LVC ++ FY G + V W Sbjct: 107 NYCRHNYGVVESFTV--QRRVHPKVTVYPSKTQPLQHHNL-LVCSVSGFYPGSIEVRWFR 163 Query: 163 DGTPITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218 +G GV T + + L P RS Y+CQV H T+ TV Sbjct: 164 NGQEEKTGVVSTGLIHNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSPLTV 216 >gi|239740857 PREDICTED: similar to major histocompatibility complex, class II, DR beta 3 isoform 2 [Homo sapiens] Length = 266 Score = 45.8 bits (107), Expect = 3e-05 Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 6/116 (5%) Query: 103 NSVKHVFGSGTQLTVLGQPKATPSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKA 162 N +H +G TV Q + P VT++ ++ LQ + LVC ++ FY G + V W Sbjct: 106 NYCRHNYGVVESFTV--QRRVHPKVTVYPSKTQPLQHHNL-LVCSVSGFYPGSIEVRWFR 162 Query: 163 DGTPITQGVEMTTPSKQSNSKYMASSYLSLTPEQWRSRRSYSCQVMHEGSTAEKTV 218 +G GV T + + L P RS Y+CQV H T+ TV Sbjct: 163 NGQEEKTGVVSTGLIHNGDWTFQTLVMLETVP---RSGEVYTCQVEHPSVTSPLTV 215 >gi|4504401 major histocompatibility complex, class II, DO alpha precursor [Homo sapiens] Length = 250 Score = 45.8 bits (107), Expect = 3e-05 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 4/90 (4%) Query: 125 PSVTLFLPSSEELQANKATLVCLMNDFYLGILTVTWKADGTPITQGVEMTTPSKQSNSKY 184 P VT+ LP S L+C++++ + ++ +TW +G +T+GV T+ Q + + Sbjct: 113 PRVTV-LPKSRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLF 171 Query: 185 MASSYLSLTPEQWRSRRSYSCQVMHEGSTA 214 YL P + Y CQV H G A Sbjct: 172 RKFHYLPFVPS---AEDVYDCQVEHWGLDA 198 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.316 0.129 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,140,360 Number of Sequences: 37866 Number of extensions: 622690 Number of successful extensions: 2755 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 98 Number of HSP's that attempted gapping in prelim test: 2623 Number of HSP's gapped (non-prelim): 229 length of query: 224 length of database: 18,247,518 effective HSP length: 98 effective length of query: 126 effective length of database: 14,536,650 effective search space: 1831617900 effective search space used: 1831617900 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.