SMPD1 33028

Name: SMPD1	Sequence: fasta or formatted (631aa)		NCBI GI: 56117840
Description: sphingomyelin phosphodiesterase 1, acid lysosomal isoform 1 precursor		Referenced in: Sphingomyelin, Ceramides, and Glycolipids Lysosomes and Related Organelles
Other entries for this name: alt prot [587aa] sphingomyelin phosphodiesterase 1, acid lysosomal isoform 2 precu...
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.7 55 2 C cysteine 2.9 18 2 D aspartate 4.3 27 2 E glutamate 4.1 26 2 F phenylalanine 3.3 21 2 G glycine 7.8 49 2 H histidine 3.6 23 1 I isoleucine 3.6 23 2 K lysine 2.1 13 2 L leucine 12.8 81 3 M methionine 1.4 9 1 N asparagine 3.2 20 1 P proline 10.0 63 3 Q glutamine 3.0 19 1 R arginine 6.0 38 2 S serine 6.7 42 2 T threonine 4.6 29 2 V valine 5.1 32 2 W tryptophan 3.3 21 1 Y tyrosine 3.5 22 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 sphingomyelin phosphodiesterase 1, acid lysosomal is... SMPD1 0.895 sphingomyelin phosphodiesterase 1, acid lysosomal is... SMPDL3B 0.128 acid sphingomyelinase-like phosphodiesterase 3B isof... SMPDL3A 0.115 acid sphingomyelinase-like phosphodiesterase 3A [Hom... SMPDL3B 0.093 acid sphingomyelinase-like phosphodiesterase 3B isof... WHAMM 0.012 WAS protein homolog associated with actin, golgi me... ROBO4 0.009 roundabout homolog 4, magic roundabout JMY 0.008 junction-mediating and regulatory protein SETD1B 0.008 SET domain containing 1B CAMTA2 0.008 calmodulin binding transcription activator 2 ZFHX3 0.008 AT-binding transcription factor 1 WASF3 0.008 WAS protein family, member 3 VASP 0.007 vasodilator-stimulated phosphoprotein HS3ST4 0.007 heparan sulfate D-glucosaminyl 3-O-sulfotransferase... LMTK3 0.007 lemur tyrosine kinase 3 KDM6B 0.006 lysine (K)-specific demethylase 6B SCAF1 0.006 SR-related CTD-associated factor 1 ZFHX4 0.006 zinc finger homeodomain 4 RAPH1 0.006 Ras association and pleckstrin homology domains 1 is... MLL4 0.006 myeloid/lymphoid or mixed-lineage leukemia 4 YLPM1 0.006 YLP motif containing 1 KLF16 0.006 BTE-binding protein 4 LOC100128074 0.006 PREDICTED: hypothetical protein PCLO 0.006 piccolo isoform 2 PCLO 0.006 piccolo isoform 1 EPS15L1 0.006 epidermal growth factor receptor pathway substrate 1... KRBA1 0.006 KRAB A domain containing 1 FNBP4 0.005 formin binding protein 4 BCL6B 0.005 B-cell CLL/lymphoma 6, member B (zinc finger protein... MYO16 0.005 myosin heavy chain Myr 8 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.