Guide to the Human Genome
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Name: CACNB4 Sequence: fasta or formatted (520aa) NCBI GI: 54607064
Description:

calcium channel, voltage-dependent, beta 4 subunit isoform b

Referenced in:

Calcium and TRP Cation Channels

Other entries for this name:
alt prot [458aa] calcium channel, voltage-dependent, beta 4 subunit isoform d
alt prot [502aa] calcium channel, voltage-dependent, beta 4 subunit isoform c
alt prot [486aa] calcium channel, voltage-dependent, beta 4 subunit isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         33           2
 C cysteine            0.8          4           1
 D aspartate           5.4         28           1
 E glutamate           6.2         32           2
 F phenylalanine       2.3         12           1
 G glycine             5.0         26           2
 H histidine           3.5         18           1
 I isoleucine          5.0         26           2
 K lysine              5.4         28           1
 L leucine             7.9         41           2
 M methionine          1.7          9           2
 N asparagine          3.7         19           2
 P proline             5.6         29           2
 Q glutamine           4.6         24           2
 R arginine            8.5         44           2
 S serine             13.1         68           4
 T threonine           6.2         32           3
 V valine              5.6         29           2
 W tryptophan          0.6          3           2
 Y tyrosine            2.9         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium channel, voltage-dependent, beta 4 subunit i... 
CACNB4                0.958   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB4                0.906   calcium channel, voltage-dependent, beta 4 subunit i...
CACNB4                0.828   calcium channel, voltage-dependent, beta 4 subunit ...
CACNB2                0.629   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.608   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.608   calcium channel, voltage-dependent, beta 2 subunit i...
CACNB2                0.603   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.603   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB1                0.601   calcium channel, voltage-dependent, beta 1 subunit i...
CACNB1                0.599   calcium channel, voltage-dependent, beta 1 subunit i...
CACNB2                0.589   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB2                0.589   calcium channel, voltage-dependent, beta 2 subunit i...
CACNB2                0.585   calcium channel, voltage-dependent, beta 2 subunit ...
CACNB3                0.574   calcium channel, voltage-dependent, beta 3 subunit [...
CACNB1                0.568   calcium channel, voltage-dependent, beta 1 subunit i...
DLG3                  0.027   synapse-associated protein 102 isoform a 
DLG3                  0.025   synapse-associated protein 102 isoform b 
DLG1                  0.024   discs, large homolog 1 isoform 1 
DLG4                  0.019   post-synaptic density protein 95 isoform 1 
DLG4                  0.019   post-synaptic density protein 95 isoform 2 
DLG1                  0.019   discs, large homolog 1 isoform 2 
DLG2                  0.016   chapsyn-110 isoform 3 
DLG2                  0.016   chapsyn-110 isoform 4 
DLG2                  0.015   chapsyn-110 isoform 1 
DLG2                  0.015   chapsyn-110 isoform 2 
MPP5                  0.014   membrane protein, palmitoylated 5 
MPP6                  0.012   membrane protein, palmitoylated 6 
CASK                  0.011   calcium/calmodulin-dependent serine protein kinase ...
CASK                  0.011   calcium/calmodulin-dependent serine protein kinase ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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