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Search of human proteins with 51173873
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51173873 high-mobility group protein 2-like 1 [Homo sapiens]
(601 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51173873 high-mobility group protein 2-like 1 [Homo sapiens] 1184 0.0
gi|4507241 structure specific recognition protein 1 [Homo sapiens] 65 1e-10
gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens] 65 1e-10
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 63 7e-10
gi|194688135 high-mobility group box 2 [Homo sapiens] 61 3e-09
gi|194688133 high-mobility group box 2 [Homo sapiens] 61 3e-09
gi|11321591 high-mobility group box 2 [Homo sapiens] 61 3e-09
gi|226246533 TOX high mobility group box family member 3 isoform... 59 1e-08
gi|226054295 TOX high mobility group box family member 3 isoform... 59 1e-08
gi|4504425 high-mobility group box 1 [Homo sapiens] 58 3e-08
gi|149408144 TOX high mobility group box family member 2 isoform... 57 4e-08
gi|149408141 TOX high mobility group box family member 2 isoform... 57 4e-08
gi|14249636 TOX high mobility group box family member 2 isoform ... 57 4e-08
gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens] 57 5e-08
gi|56806673 high-mobility group box 1-like 1 [Homo sapiens] 56 1e-07
gi|71143137 high-mobility group box 3 [Homo sapiens] 55 1e-07
gi|7662322 thymus high mobility group box protein TOX [Homo sapi... 54 4e-07
gi|169184027 PREDICTED: similar to high mobility group box 3 [Ho... 54 5e-07
gi|113421073 PREDICTED: similar to high mobility group box 3 [Ho... 54 5e-07
gi|113420668 PREDICTED: similar to high mobility group box 3 [Ho... 54 5e-07
gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens] 53 7e-07
gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens] 53 7e-07
gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo sap... 53 7e-07
gi|41281917 polybromo 1 isoform 4 [Homo sapiens] 52 1e-06
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 52 2e-06
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 52 2e-06
gi|117553584 adaptor-related protein complex 3, delta 1 subunit ... 51 3e-06
gi|169212060 PREDICTED: high mobility group protein B3-like prot... 51 3e-06
gi|239745831 PREDICTED: high mobility group protein B3-like prot... 51 3e-06
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 51 3e-06
>gi|51173873 high-mobility group protein 2-like 1 [Homo sapiens]
Length = 601
Score = 1184 bits (3062), Expect = 0.0
Identities = 601/601 (100%), Positives = 601/601 (100%)
Query: 1 MAYDDSVKKEDCFDGDHTFEDIGLAAGRSQREKKRSYKDFLREEEEIAAQVRNSSKKKLK 60
MAYDDSVKKEDCFDGDHTFEDIGLAAGRSQREKKRSYKDFLREEEEIAAQVRNSSKKKLK
Sbjct: 1 MAYDDSVKKEDCFDGDHTFEDIGLAAGRSQREKKRSYKDFLREEEEIAAQVRNSSKKKLK 60
Query: 61 DSELYFLGTDTHKKKRKHSSDDYYYGDISSLESSQKKKKKSSPQSTDTAMDLLKAITSPL 120
DSELYFLGTDTHKKKRKHSSDDYYYGDISSLESSQKKKKKSSPQSTDTAMDLLKAITSPL
Sbjct: 61 DSELYFLGTDTHKKKRKHSSDDYYYGDISSLESSQKKKKKSSPQSTDTAMDLLKAITSPL 120
Query: 121 AAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVSGSSGELPLEDGGSHKSKKMKPLYVNTE 180
AAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVSGSSGELPLEDGGSHKSKKMKPLYVNTE
Sbjct: 121 AAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVSGSSGELPLEDGGSHKSKKMKPLYVNTE 180
Query: 181 TLTLREPDGLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHE 240
TLTLREPDGLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHE
Sbjct: 181 TLTLREPDGLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHE 240
Query: 241 LQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGG 300
LQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGG
Sbjct: 241 LQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGG 300
Query: 301 ELEAGELVIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTS 360
ELEAGELVIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTS
Sbjct: 301 ELEAGELVIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTS 360
Query: 361 GPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKKEEKDKERERGEKPKKKNMSAYQVFCKE 420
GPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKKEEKDKERERGEKPKKKNMSAYQVFCKE
Sbjct: 361 GPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKKEEKDKERERGEKPKKKNMSAYQVFCKE 420
Query: 421 YRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKAS 480
YRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKAS
Sbjct: 421 YRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKAS 480
Query: 481 SSEGSMKVKASSVGVLSPQKKSPPTTMLLPASPAKAPETEPIDVAAHLQLLGESLSLIGH 540
SSEGSMKVKASSVGVLSPQKKSPPTTMLLPASPAKAPETEPIDVAAHLQLLGESLSLIGH
Sbjct: 481 SSEGSMKVKASSVGVLSPQKKSPPTTMLLPASPAKAPETEPIDVAAHLQLLGESLSLIGH 540
Query: 541 RLQETEGMVAVSGSLSVLLDSIICALGPLACLTTQLPELNGCPKQVLSNTLDNIAYIMPG 600
RLQETEGMVAVSGSLSVLLDSIICALGPLACLTTQLPELNGCPKQVLSNTLDNIAYIMPG
Sbjct: 541 RLQETEGMVAVSGSLSVLLDSIICALGPLACLTTQLPELNGCPKQVLSNTLDNIAYIMPG 600
Query: 601 L 601
L
Sbjct: 601 L 601
>gi|4507241 structure specific recognition protein 1 [Homo sapiens]
Length = 709
Score = 65.5 bits (158), Expect = 1e-10
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 389 KKKKKEEKDKERERGEKPK--KKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWK 446
K +K +K E ++G+ P K+ MSAY ++ R I +DHPGI +LSKK E+WK
Sbjct: 527 KDRKSRKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGISITDLSKKAGEIWK 586
Query: 447 QLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQKKSP 503
+ ++ K W +KA+ + KA + SS+ K V V +K +P
Sbjct: 587 GMSKEKKEEWDRKAEDARRDYEKAMKEYEGGRGESSKRDKSKKKKKVKVKMEKKSTP 643
>gi|7662274 epidermal Langerhans cell protein LCP1 [Homo sapiens]
Length = 621
Score = 65.5 bits (158), Expect = 1e-10
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 25/198 (12%)
Query: 340 SKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLPGLHTDGHSE----------- 388
S+ LGLS +G T+ PP P + P P LH DG +
Sbjct: 147 SELSSQLGLS---LGGGTIL--PPAQSPEDRLSTTPSPTSSLHEDGVEDFRRQLPSQKTV 201
Query: 389 -----KKKKKEEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAE 443
KK+K +K K+++ E +K +SAY +F ++ + I +P FGE+SK +A
Sbjct: 202 VVEAGKKQKAPKKRKKKDPNEP--QKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVAS 259
Query: 444 VWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQKKSP 503
+W L E+ K ++K+K + K+ +A + + +++ S P
Sbjct: 260 MWDSLGEEQKQVYKRKTE--AAKKEYLKALAAYKDNQECQATVETVELDPAPPSQTPSPP 317
Query: 504 PTTMLLPASPAKAPETEP 521
P + PASPA A P
Sbjct: 318 PMATVDPASPAPASIEPP 335
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 63.2 bits (152), Expect = 7e-10
Identities = 99/457 (21%), Positives = 180/457 (39%), Gaps = 67/457 (14%)
Query: 96 KKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVSGS 155
KK+K S ST +DL A+ + + ++ +KS G + K++ +
Sbjct: 3 KKQKNKSEDSTKDDIDL-DALAAEIEGAGAAKEQEPQKSKGKKKKEKKKQDFDEDDILKE 61
Query: 156 SGELPLEDGGSHKSKK---MKPLYVNTETLTLREPDGLKMKLILSPKEKGSSSVDEESFQ 212
EL LE G ++ +KP N E T ++ K K K S D +S +
Sbjct: 62 LEELSLEAQGIKADRETVAVKPTENNEEEFTSKD------KKKKGQKGKKQSFDDNDSEE 115
Query: 213 YPSQQATVKKSSKKSARDEQGALLLGHELQSFLKTARK-KHKSSSDAHSSPGPEGCGSDA 271
+ + KK++K G+ + F K +K K K+ G E ++
Sbjct: 116 LEDKDSKSKKTAKPKVEMYSGS----DDDDDFNKLPKKAKGKAQKSNKKWDGSEEDEDNS 171
Query: 272 SQFAESHSANLD----------LSGLEPILVESDSSSGGELEAGELVIDDSYR----EIK 317
+ E N L + + G +E+G D S++ K
Sbjct: 172 KKIKERSRINSSGESGDESDEFLQSRKGQKKNQKNKPGPNIESGNEDDDASFKIKTVAQK 231
Query: 318 KKKKSKKSKKKKDKEKHK----------------EKRHSKSKRSLGLSAVPVGEVTVTSG 361
K +K ++ +KK+D+EK K + + +S+R V +VTV +G
Sbjct: 232 KAEKKERERKKRDEEKAKLRKLKEKEELETGKKDQSKQKESQRKFEEETVK-SKVTVDTG 290
Query: 362 PPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKKEEKDKERERGEKPKKKNMSAYQVFCKEY 421
P A+ P D + KKKK++K K+ E+ EK K+K + K
Sbjct: 291 VIP------ASEEKAETPTAAEDDNEGDKKKKDKKKKKGEKEEKEKEKKKGPSKATVKAM 344
Query: 422 RVTIV-----ADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAE----- 471
+ + + + E K+L E+ + E+++L +++ + Q ++ + E
Sbjct: 345 QEALAKLKEEEERQKREEEERIKRLEELEAKRKEEERLEQEKRERKKQKEKERKERLKKE 404
Query: 472 ---ATTVKRKA-SSSEGSMKVKASSVGVLSPQKKSPP 504
T +R+A + +E ++K+ + GV P K S P
Sbjct: 405 GKLLTKSQREARARAEATLKL-LQAQGVEVPSKDSLP 440
Score = 35.0 bits (79), Expect = 0.20
Identities = 88/432 (20%), Positives = 162/432 (37%), Gaps = 83/432 (19%)
Query: 25 AAGRSQREKKRSYKDFLREEEEIAAQVR-----NSSKKKLKDSELYFLGTDTHKKKRKH- 78
A G++Q+ K+ D E+E+ + +++ NSS + +S+ + KK +K+
Sbjct: 150 AKGKAQKSNKKW--DGSEEDEDNSKKIKERSRINSSGESGDESDEFLQSRKGQKKNQKNK 207
Query: 79 --------SSDDYYYGDISSLESSQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKT 130
+ DD I ++ + +KK+ + D L+ + K +T
Sbjct: 208 PGPNIESGNEDDDASFKIKTVAQKKAEKKERERKKRDEEKAKLRKLKE------KEELET 261
Query: 131 GEKSSGSSSHSESKKEHH--RKKVSGSSGELPLEDGGSHKSKKMKPLYVNTETLTLREPD 188
G+K S+ K E + KV+ +G +P + ET T E D
Sbjct: 262 GKKDQSKQKESQRKFEEETVKSKVTVDTGVIPASEE-------------KAETPTAAEDD 308
Query: 189 --GLKMKLILSPKEKGSSSVDEESFQYPSQQ---------ATVKKSSKKSARDEQGALLL 237
G K K K+ ++E + PS+ A +K+ ++ R+E+ +
Sbjct: 309 NEGDKKKKDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKR 368
Query: 238 GHELQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSS 297
EL++ K + + + Q + L G +L +S
Sbjct: 369 LEELEAKRKEEERLEQEKRERKK------------QKEKERKERLKKEG--KLLTKSQRE 414
Query: 298 SGGELEAGELVIDDSYREIKKKKK-SKKSKKKKDKEKHKEKRHSKSKR---SLGL-SAVP 352
+ EA ++ E+ K KK +DK++ K + +SK S+ L +AV
Sbjct: 415 ARARAEATLKLLQAQGVEVPSKDSLPKKRPIYEDKKRKKIPQQLESKEVSESMELCAAVE 474
Query: 353 VGEVTVTSG---PPPSIPYAGAAAPPLPLP---GLHTDGHSEK----------KKKKEEK 396
V E V PPP P L + +D +EK K+ EE+
Sbjct: 475 VMEQGVPEKEETPPPVEPEEEEDTEDAGLDDWEAMASDEETEKVEGNKVHIEVKENPEEE 534
Query: 397 DKERERGEKPKK 408
++E E E+ ++
Sbjct: 535 EEEEEEEEEDEE 546
Score = 34.3 bits (77), Expect = 0.34
Identities = 40/229 (17%), Positives = 91/229 (39%), Gaps = 14/229 (6%)
Query: 15 GDHTFEDIGLAAGRSQREKKRSYKDFL--REEEEIAAQVRNSSKKKLKDSELYFLGTDTH 72
GD + E + G+ + +K + + E+++ + +++ ++KK + E D
Sbjct: 187 GDESDEFLQSRKGQKKNQKNKPGPNIESGNEDDDASFKIKTVAQKKAEKKERERKKRDEE 246
Query: 73 KKKRKHSSDDYYYGDISSLESSQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTGE 132
K K + + ++ + + Q K+K+S + + + + + + S+ +T
Sbjct: 247 KAKLRKLKEKE---ELETGKKDQSKQKESQRKFEEETVKSKVTVDTGVIPASEEKAETPT 303
Query: 133 KSSGSSSHSESKKEHHRKKVSGSSGELPLEDGGSHKSKK-----MKPLYVNTETLTLREP 187
+ + + KK+ +KK E + G S + K + L E E
Sbjct: 304 AAEDDNEGDKKKKDKKKKKGEKEEKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEE 363
Query: 188 DGLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALL 236
+ +K L K K +++E + Q K+ +K ++G LL
Sbjct: 364 ERIKRLEELEAKRKEEERLEQEKRERKKQ----KEKERKERLKKEGKLL 408
>gi|194688135 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 61.2 bits (147), Expect = 3e-09
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 398 KERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWK 457
K +++ K+ SA+ +FC E+R I ++HPG+ G+ +KKL E+W + KDK ++
Sbjct: 86 KGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYE 145
Query: 458 QKAQYLQHKQNKAEATTVKRKASSSEG 484
QKA L+ K K + + K S G
Sbjct: 146 QKAAKLKEKYEK-DIAAYRAKGKSEAG 171
Score = 37.4 bits (85), Expect = 0.040
Identities = 38/137 (27%), Positives = 55/137 (40%), Gaps = 15/137 (10%)
Query: 405 KPKKKNMSAYQVFCKEYRVTIVADHP--GIDFGELSKKLAEVWKQLPEKDKLIWKQKAQY 462
KP+ K MS+Y F + R HP ++F E SKK +E WK + K+K ++ A
Sbjct: 8 KPRGK-MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA-- 64
Query: 463 LQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQKKSPPTTMLLPAS---PAKAPET 519
K +KA + +G K K K PP+ L S P E
Sbjct: 65 ---KSDKARYDREMKNYVPPKGDKKGKKKDPNA----PKRPPSAFFLFCSEHRPKIKSEH 117
Query: 520 EPIDVAAHLQLLGESLS 536
+ + + LGE S
Sbjct: 118 PGLSIGDTAKKLGEMWS 134
>gi|194688133 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 61.2 bits (147), Expect = 3e-09
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 398 KERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWK 457
K +++ K+ SA+ +FC E+R I ++HPG+ G+ +KKL E+W + KDK ++
Sbjct: 86 KGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYE 145
Query: 458 QKAQYLQHKQNKAEATTVKRKASSSEG 484
QKA L+ K K + + K S G
Sbjct: 146 QKAAKLKEKYEK-DIAAYRAKGKSEAG 171
Score = 37.4 bits (85), Expect = 0.040
Identities = 38/137 (27%), Positives = 55/137 (40%), Gaps = 15/137 (10%)
Query: 405 KPKKKNMSAYQVFCKEYRVTIVADHP--GIDFGELSKKLAEVWKQLPEKDKLIWKQKAQY 462
KP+ K MS+Y F + R HP ++F E SKK +E WK + K+K ++ A
Sbjct: 8 KPRGK-MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA-- 64
Query: 463 LQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQKKSPPTTMLLPAS---PAKAPET 519
K +KA + +G K K K PP+ L S P E
Sbjct: 65 ---KSDKARYDREMKNYVPPKGDKKGKKKDPNA----PKRPPSAFFLFCSEHRPKIKSEH 117
Query: 520 EPIDVAAHLQLLGESLS 536
+ + + LGE S
Sbjct: 118 PGLSIGDTAKKLGEMWS 134
>gi|11321591 high-mobility group box 2 [Homo sapiens]
Length = 209
Score = 61.2 bits (147), Expect = 3e-09
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 398 KERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWK 457
K +++ K+ SA+ +FC E+R I ++HPG+ G+ +KKL E+W + KDK ++
Sbjct: 86 KGKKKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLSIGDTAKKLGEMWSEQSAKDKQPYE 145
Query: 458 QKAQYLQHKQNKAEATTVKRKASSSEG 484
QKA L+ K K + + K S G
Sbjct: 146 QKAAKLKEKYEK-DIAAYRAKGKSEAG 171
Score = 37.4 bits (85), Expect = 0.040
Identities = 38/137 (27%), Positives = 55/137 (40%), Gaps = 15/137 (10%)
Query: 405 KPKKKNMSAYQVFCKEYRVTIVADHP--GIDFGELSKKLAEVWKQLPEKDKLIWKQKAQY 462
KP+ K MS+Y F + R HP ++F E SKK +E WK + K+K ++ A
Sbjct: 8 KPRGK-MSSYAFFVQTCREEHKKKHPDSSVNFAEFSKKCSERWKTMSAKEKSKFEDMA-- 64
Query: 463 LQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQKKSPPTTMLLPAS---PAKAPET 519
K +KA + +G K K K PP+ L S P E
Sbjct: 65 ---KSDKARYDREMKNYVPPKGDKKGKKKDPNA----PKRPPSAFFLFCSEHRPKIKSEH 117
Query: 520 EPIDVAAHLQLLGESLS 536
+ + + LGE S
Sbjct: 118 PGLSIGDTAKKLGEMWS 134
>gi|226246533 TOX high mobility group box family member 3 isoform 2
[Homo sapiens]
Length = 571
Score = 58.9 bits (141), Expect = 1e-08
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 359 TSGPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKKEEKDKERERGEKPK----------- 407
TS PP A +A P P ++ + E + EK + G+KPK
Sbjct: 193 TSPSPP----ASKSATPSPSSSINEEDADEANRAIGEKRAAPDSGKKPKTPKKKKKKDPN 248
Query: 408 --KKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQH 465
+K +SAY +F ++ + I +P FGE+SK +A +W L E+ K ++K+K + +
Sbjct: 249 EPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKK 308
Query: 466 KQNKA----EATTVKRKASSSEGSMKVKA-----SSVGVLSPQKKSPPTTM--LLPASPA 514
+ KA A+ V + A+ S + +++ +S + S + P + + ASP
Sbjct: 309 EYLKALAAYRASLVSKAAAESAEAQTIRSVQQTLASTNLTSSLLLNTPLSQHGTVSASPQ 368
Query: 515 KAPETEPIDVA 525
++ P +A
Sbjct: 369 TLQQSLPRSIA 379
>gi|226054295 TOX high mobility group box family member 3 isoform 1
[Homo sapiens]
Length = 576
Score = 58.9 bits (141), Expect = 1e-08
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 359 TSGPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKKEEKDKERERGEKPK----------- 407
TS PP A +A P P ++ + E + EK + G+KPK
Sbjct: 198 TSPSPP----ASKSATPSPSSSINEEDADEANRAIGEKRAAPDSGKKPKTPKKKKKKDPN 253
Query: 408 --KKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQH 465
+K +SAY +F ++ + I +P FGE+SK +A +W L E+ K ++K+K + +
Sbjct: 254 EPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDSLGEEQKQVYKRKTEAAKK 313
Query: 466 KQNKA----EATTVKRKASSSEGSMKVKA-----SSVGVLSPQKKSPPTTM--LLPASPA 514
+ KA A+ V + A+ S + +++ +S + S + P + + ASP
Sbjct: 314 EYLKALAAYRASLVSKAAAESAEAQTIRSVQQTLASTNLTSSLLLNTPLSQHGTVSASPQ 373
Query: 515 KAPETEPIDVA 525
++ P +A
Sbjct: 374 TLQQSLPRSIA 384
>gi|4504425 high-mobility group box 1 [Homo sapiens]
Length = 215
Score = 57.8 bits (138), Expect = 3e-08
Identities = 26/72 (36%), Positives = 42/72 (58%)
Query: 398 KERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWK 457
K++ + K+ SA+ +FC EYR I +HPG+ G+++KKL E+W DK ++
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYE 145
Query: 458 QKAQYLQHKQNK 469
+KA L+ K K
Sbjct: 146 KKAAKLKEKYEK 157
Score = 35.4 bits (80), Expect = 0.15
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 404 EKPKKKNMSAYQVFCKEYRVTIVADHP--GIDFGELSKKLAEVWKQLPEKDKLIWKQKAQ 461
+KP+ K MS+Y F + R HP ++F E SKK +E WK + K+K ++ A+
Sbjct: 7 KKPRGK-MSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAK 65
Query: 462 YLQHKQNKAEATTVKRKASSSE 483
+ + + T + K + +
Sbjct: 66 ADKARYEREMKTYIPPKGETKK 87
>gi|149408144 TOX high mobility group box family member 2 isoform a
[Homo sapiens]
Length = 506
Score = 57.4 bits (137), Expect = 4e-08
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 390 KKKKEEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLP 449
KK K K K+++ +P+K +SAY +F ++ + I +P FG++SK +A +W L
Sbjct: 230 KKAKNPKKKKKKDPNEPQKP-VSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLG 288
Query: 450 EKDKLIWKQKAQYLQHKQNKAEA---TTVKRKASSSEGSMKVKASSVGVLSPQKKSPPTT 506
E+ K +K+K + + + KA A ++ K+S +G K + +PP
Sbjct: 289 EEQKQAYKRKTEAAKKEYLKALAAYRASLVSKSSPDQGETK----------STQANPPAK 338
Query: 507 MLLPASPAKA 516
ML P P A
Sbjct: 339 MLPPKQPMYA 348
>gi|149408141 TOX high mobility group box family member 2 isoform c
[Homo sapiens]
Length = 464
Score = 57.4 bits (137), Expect = 4e-08
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 390 KKKKEEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLP 449
KK K K K+++ +P+K +SAY +F ++ + I +P FG++SK +A +W L
Sbjct: 188 KKAKNPKKKKKKDPNEPQKP-VSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLG 246
Query: 450 EKDKLIWKQKAQYLQHKQNKAEA---TTVKRKASSSEGSMKVKASSVGVLSPQKKSPPTT 506
E+ K +K+K + + + KA A ++ K+S +G K + +PP
Sbjct: 247 EEQKQAYKRKTEAAKKEYLKALAAYRASLVSKSSPDQGETK----------STQANPPAK 296
Query: 507 MLLPASPAKA 516
ML P P A
Sbjct: 297 MLPPKQPMYA 306
>gi|14249636 TOX high mobility group box family member 2 isoform c
[Homo sapiens]
Length = 464
Score = 57.4 bits (137), Expect = 4e-08
Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 390 KKKKEEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLP 449
KK K K K+++ +P+K +SAY +F ++ + I +P FG++SK +A +W L
Sbjct: 188 KKAKNPKKKKKKDPNEPQKP-VSAYALFFRDTQAAIKGQNPSATFGDVSKIVASMWDSLG 246
Query: 450 EKDKLIWKQKAQYLQHKQNKAEA---TTVKRKASSSEGSMKVKASSVGVLSPQKKSPPTT 506
E+ K +K+K + + + KA A ++ K+S +G K + +PP
Sbjct: 247 EEQKQAYKRKTEAAKKEYLKALAAYRASLVSKSSPDQGETK----------STQANPPAK 296
Query: 507 MLLPASPAKA 516
ML P P A
Sbjct: 297 MLPPKQPMYA 306
>gi|19923236 nuclear antigen Sp100 isoform 2 [Homo sapiens]
Length = 879
Score = 57.0 bits (136), Expect = 5e-08
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 14/117 (11%)
Query: 386 HSEKKKK-----KEEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKK 440
H E++ K K EK K+ + PK+ + A+ +FC EYR I +HPG+ ++ KK
Sbjct: 744 HYEREMKTYIPPKGEKKKKFKDPNAPKRPPL-AFFLFCSEYRPKIKGEHPGLSIDDVVKK 802
Query: 441 LAEVWKQLPEKDKLIWKQKAQYLQHK--------QNKAEATTVKRKASSSEGSMKVK 489
LA +W DK +++KA L+ K + K + + K++ +E S K K
Sbjct: 803 LAGMWNNTAAADKQFYEKKAAKLKEKYKKDIAAYRAKGKPNSAKKRVVKAEKSKKKK 859
>gi|56806673 high-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 55.8 bits (133), Expect = 1e-07
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 12/119 (10%)
Query: 386 HSEKKKKK----EEKDKERERGEKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKL 441
H E++ K + + K++ + K+ SA+ +FC EY I +HPG+ G+++KKL
Sbjct: 70 HYERQMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLSIGDVAKKL 129
Query: 442 AEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQK 500
E+W DK ++KA L+ K K A A ++G K +A+ GV+ +K
Sbjct: 130 GEMWNNTAADDKQPGEKKAAKLKEKYEKDIA------AYQAKG--KPEAAKKGVVKAEK 180
Score = 30.0 bits (66), Expect = 6.4
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 404 EKPKKKNMSAYQVFCKEYRVTIVADHP--GIDFGELSKKLAEVWKQLPEKDK 453
+KP+ K MS+Y F + R H ++F E S K +E WK + K+K
Sbjct: 7 KKPRGK-MSSYAFFVQTCREEHKKKHSDASVNFSEFSNKCSERWKTMSAKEK 57
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 55.5 bits (132), Expect = 1e-07
Identities = 36/108 (33%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 393 KEEKDKERERGEKPKK------KNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWK 446
+E KD +G K KK + S + +FC E+R I + +PGI G+++KKL E+W
Sbjct: 73 REMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWN 132
Query: 447 QLPEKDKLIWKQKAQYLQHKQNKAEAT-TVKRKASSSEGSMKVKASSV 493
L + +K + KA L+ K K A K K ++G KV V
Sbjct: 133 NLNDSEKQPYITKAAKLKEKYEKDVADYKSKGKFDGAKGPAKVARKKV 180
Score = 35.0 bits (79), Expect = 0.20
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 17/135 (12%)
Query: 404 EKPKKKNMSAYQVFCKEYRVTIVADHPGI--DFGELSKKLAEVWKQLPEKDKLIWKQKAQ 461
+KPK K MSAY F + R +P + +F E SKK +E WK + K+K + + A
Sbjct: 7 KKPKGK-MSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMA- 64
Query: 462 YLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQKKSPPTTMLLPASP--AKAPET 519
K +K + ++G K K + K PP+ L S K T
Sbjct: 65 ----KADKVRYDREMKDYGPAKGGKKKKDPNA------PKRPPSGFFLFCSEFRPKIKST 114
Query: 520 EP-IDVAAHLQLLGE 533
P I + + LGE
Sbjct: 115 NPGISIGDVAKKLGE 129
>gi|7662322 thymus high mobility group box protein TOX [Homo
sapiens]
Length = 526
Score = 53.9 bits (128), Expect = 4e-07
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 367 PYAGAAAPPLPLPGLHTD-GHSEKKKKKEEKDKERERGEKPK-------------KKNMS 412
P +A P P +H D G K EK + G+KPK +K +S
Sbjct: 207 PPGSKSATPSPSSSVHEDEGDDTSKINGGEKRPASDMGKKPKTPKKKKKKDPNEPQKPVS 266
Query: 413 AYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQ 461
AY +F ++ + I +P FGE+SK +A +W L E+ K ++K+K +
Sbjct: 267 AYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTE 315
>gi|169184027 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 53.5 bits (127), Expect = 5e-07
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 393 KEEKDKERERGEKPKKKNM-----SAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQ 447
+E KD +G K K N S + +FC E+R I + +PGI G+++KKL E+W
Sbjct: 73 REMKDYGPAKGGKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNN 132
Query: 448 LPEKDKLIWKQKAQYLQHKQNK 469
L + +K + KA L+ K K
Sbjct: 133 LNDSEKQPYVTKAAKLKEKYEK 154
Score = 30.0 bits (66), Expect = 6.4
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 11/64 (17%)
Query: 404 EKPKKKNMSAY----QVFCKEYRVTIVADHPGI--DFGELSKKLAEVWKQLPEKDKLIWK 457
+KP+ K MSAY Q CKE++ +P + +F E SKK + WK + K+K +
Sbjct: 7 KKPQGK-MSAYAFSVQTCCKEHK----KKNPEVLVNFAEFSKKCSGRWKTMSSKEKFKFG 61
Query: 458 QKAQ 461
+ A+
Sbjct: 62 EMAK 65
>gi|113421073 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 53.5 bits (127), Expect = 5e-07
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 393 KEEKDKERERGEKPKKKNM-----SAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQ 447
+E KD +G K K N S + +FC E+R I + +PGI G+++KKL E+W
Sbjct: 73 REMKDYGPAKGGKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNN 132
Query: 448 LPEKDKLIWKQKAQYLQHKQNK 469
L + +K + KA L+ K K
Sbjct: 133 LNDSEKQPYVTKAAKLKEKYEK 154
Score = 30.4 bits (67), Expect = 4.9
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 404 EKPKKKNMSAY----QVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQK 459
+KP+ K MSAY Q CKE++ ++F E SKK + WK + K+K + +
Sbjct: 7 KKPQGK-MSAYAFSVQTCCKEHKKK--NPEVPVNFAEFSKKCSGRWKTMSSKEKFKFGEM 63
Query: 460 AQ 461
A+
Sbjct: 64 AK 65
>gi|113420668 PREDICTED: similar to high mobility group box 3 [Homo
sapiens]
Length = 208
Score = 53.5 bits (127), Expect = 5e-07
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 393 KEEKDKERERGEKPKKKNM-----SAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQ 447
+E KD +G K K N S + +FC E+R I + +PGI G+++KKL E+W
Sbjct: 73 REMKDYGPAKGGKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNN 132
Query: 448 LPEKDKLIWKQKAQYLQHKQNK 469
L + +K + KA L+ K K
Sbjct: 133 LNDSEKQPYVTKAAKLKEKYEK 154
Score = 30.4 bits (67), Expect = 4.9
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 404 EKPKKKNMSAY----QVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQK 459
+KP+ K MSAY Q CKE++ ++F E SKK + WK + K+K + +
Sbjct: 7 KKPQGK-MSAYAFSVQTCCKEHKKK--NPEVPVNFAEFSKKCSGRWKTMSSKEKFKFGEM 63
Query: 460 AQ 461
A+
Sbjct: 64 AK 65
>gi|169217198 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 53.1 bits (126), Expect = 7e-07
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 393 KEEKDKERERGEKPK-----KKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQ 447
+E KD G K K K+ +S + +FC E+ I + +PGI G+++KKL E+W
Sbjct: 73 QEMKDNGPVEGGKKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWIN 132
Query: 448 LPEKDKLIWKQKAQYLQHKQNKAEAT-TVKRKASSSEGSMKV 488
+++K + KA L+ K K A K K S++G K+
Sbjct: 133 YSDREKQPYITKAADLKEKYEKDVADYKSKGKFDSAKGPTKI 174
Score = 29.6 bits (65), Expect = 8.3
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 21/112 (18%)
Query: 404 EKPKKKNMSAYQVFCKEYRVTIVADHPGI--DFGELSKKLAEVWKQLPEKDKLIWKQ--- 458
+KPK K MSAY F + R +P + +F E SKK +E K + K+K + +
Sbjct: 7 KKPKGK-MSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMAK 65
Query: 459 --KAQYLQHKQN--------KAEATTVKRKASS-----SEGSMKVKASSVGV 495
K Y Q ++ K + +KR S SE K+K+++ G+
Sbjct: 66 VDKVHYDQEMKDNGPVEGGKKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGI 117
>gi|169216377 PREDICTED: similar to hCG1644442 [Homo sapiens]
Length = 201
Score = 53.1 bits (126), Expect = 7e-07
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 393 KEEKDKERERGEKPK-----KKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQ 447
+E KD G K K K+ +S + +FC E+ I + +PGI G+++KKL E+W
Sbjct: 73 QEMKDNGPVEGGKKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWIN 132
Query: 448 LPEKDKLIWKQKAQYLQHKQNKAEAT-TVKRKASSSEGSMKV 488
+++K + KA L+ K K A K K S++G K+
Sbjct: 133 YSDREKQPYITKAADLKEKYEKDVADYKSKGKFDSAKGPTKI 174
Score = 29.6 bits (65), Expect = 8.3
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 21/112 (18%)
Query: 404 EKPKKKNMSAYQVFCKEYRVTIVADHPGI--DFGELSKKLAEVWKQLPEKDKLIWKQ--- 458
+KPK K MSAY F + R +P + +F E SKK +E K + K+K + +
Sbjct: 7 KKPKGK-MSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMAK 65
Query: 459 --KAQYLQHKQN--------KAEATTVKRKASS-----SEGSMKVKASSVGV 495
K Y Q ++ K + +KR S SE K+K+++ G+
Sbjct: 66 VDKVHYDQEMKDNGPVEGGKKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGI 117
>gi|169216609 PREDICTED: hypothetical protein LOC203510 [Homo
sapiens]
Length = 201
Score = 53.1 bits (126), Expect = 7e-07
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 393 KEEKDKERERGEKPK-----KKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQ 447
+E KD G K K K+ +S + +FC E+ I + +PGI G+++KKL E+W
Sbjct: 73 QEMKDNGPVEGGKKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGISIGDMAKKLGEMWIN 132
Query: 448 LPEKDKLIWKQKAQYLQHKQNKAEAT-TVKRKASSSEGSMKV 488
+++K + KA L+ K K A K K S++G K+
Sbjct: 133 YSDREKQPYITKAADLKEKYEKDVADYKSKGKFDSAKGPTKI 174
Score = 29.6 bits (65), Expect = 8.3
Identities = 32/112 (28%), Positives = 51/112 (45%), Gaps = 21/112 (18%)
Query: 404 EKPKKKNMSAYQVFCKEYRVTIVADHPGI--DFGELSKKLAEVWKQLPEKDKLIWKQ--- 458
+KPK K MSAY F + R +P + +F E SKK +E K + K+K + +
Sbjct: 7 KKPKGK-MSAYAFFAQTCREEHKKKNPEVPVNFVEFSKKCSEKRKTMSGKEKTKFDEMAK 65
Query: 459 --KAQYLQHKQN--------KAEATTVKRKASS-----SEGSMKVKASSVGV 495
K Y Q ++ K + +KR S SE K+K+++ G+
Sbjct: 66 VDKVHYDQEMKDNGPVEGGKKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGI 117
>gi|41281917 polybromo 1 isoform 4 [Homo sapiens]
Length = 1582
Score = 52.4 bits (124), Expect = 1e-06
Identities = 60/194 (30%), Positives = 80/194 (41%), Gaps = 26/194 (13%)
Query: 375 PLPLPGLHTDGHSE---------KKKKKEEKDKERERGEKPKKKNMSAYQVFCKEYRVTI 425
P LP L T SE + K K ++ G K +K NMS Y +F E R I
Sbjct: 1339 PPSLPQLQTPLASELDLMPYTPPQSTPKSAKGSAKKEGSK-RKINMSGYILFSSEMRAVI 1397
Query: 426 VADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRKASSSEGS 485
A HP FGELS+ + W+ L +KA+Y + N+ A V A
Sbjct: 1398 KAQHPDYSFGELSRLVGTEWRNLET------AKKAEY-EGVMNQGVAPMVGTPAPGG--- 1447
Query: 486 MKVKASSVGVLSP--QKKSPPTTMLLPASPAKAPE-TEPIDVAAHLQLLGESLSLIGHRL 542
VGVL P Q+ PP PA P + T P+ VA + + L L
Sbjct: 1448 -SPYGQQVGVLGPPGQQAPPPYPGPHPAGPPVIQQPTTPMFVAPPPKT--QRLLHSEAYL 1504
Query: 543 QETEGMVAVSGSLS 556
+ EG+ A S S+S
Sbjct: 1505 KYIEGLSAESNSIS 1518
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
Length = 1758
Score = 51.6 bits (122), Expect = 2e-06
Identities = 87/404 (21%), Positives = 145/404 (35%), Gaps = 63/404 (15%)
Query: 29 SQREKKRSYKDFLREEEEIAAQVRNSSKKKLKDSELYFLG------TDTHKKKRKHSSDD 82
S + +K S D L E+ + ++S + + D T KK + + +
Sbjct: 1388 STQPEKESNLDRLNEQGNFKSLSQSSKEARTSDKHDSTRASSNKDFTPNRDKKTDYDTRE 1447
Query: 83 YYYGDISSLESSQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSSGSSSHSE 142
Y ++ ++K S ++ D+A P P K TG+ +SS S
Sbjct: 1448 YSSSKRRDEKNELTRRKDSPSRNKDSASGQKN---KPREERDLPKKGTGDSKKSNSSPSR 1504
Query: 143 SKKEHHRKKVSGSSGELPLEDGGSHKSKKMKPLYVNT-ETLTLREPDGLKMKLILSP--- 198
+K H K + + P E+ S K + E +E G K+ IL+P
Sbjct: 1505 DRKPHDHKATYDT--KRPNEETKSVDKNPCKDREKHVLEARNNKESSGNKLLYILNPPET 1562
Query: 199 ---KEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLG--HELQSFLKTARKKHK 253
KE+ + +D+ + + Q + + S R+ A +E S + K+ +
Sbjct: 1563 QVEKEQITGQIDKSTVKPKPQLSHSSRLSSDLTRETDEAAFEPDYNESDSESNVSVKEEE 1622
Query: 254 SSS-------DAHSSPGPEGCGSDAS-QFAESHSANLDLSGLEPILVESDSSSGGELEAG 305
SS D E + A Q S + + + P S S S +
Sbjct: 1623 SSGNISKDLKDKIVEKAKESLDTAAVVQVGISRNQSHSSPSVSPSRSHSPSGSQTRSHSS 1682
Query: 306 ELVIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPS 365
+S KKKKK +K K KK K+ K K+H+ ++ L S
Sbjct: 1683 SASSAESQDSKKKKKKKEKKKHKKHKKHKKHKKHAGTEVELEKS---------------- 1726
Query: 366 IPYAGAAAPPLPLPGLHTDGHSEKKKK-KEEKDKERERGEKPKK 408
H KKKK K+ KDKE+E+ + +K
Sbjct: 1727 ------------------QKHKHKKKKSKKNKDKEKEKEKDDQK 1752
Score = 47.0 bits (110), Expect = 5e-05
Identities = 93/418 (22%), Positives = 157/418 (37%), Gaps = 67/418 (16%)
Query: 30 QREKKRSYKDFLREEEEIAAQVRNSSKKKLKDSELYFLGTDTHKKKR------KHSSDDY 83
Q+ K + ++ E + + +S K K KD + L + +K++ K S+ D
Sbjct: 1340 QKFTKDVSHEIIQHEVKSSKNSASSEKGKTKDRDYSVLEKENPEKRKNSTQPEKESNLDR 1399
Query: 84 Y--YGDISSLESSQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTG--EKSSGSSS 139
G+ SL S K+ + S + A +S KKT + SS
Sbjct: 1400 LNEQGNFKSLSQSSKEARTSDKHDSTRA-------SSNKDFTPNRDKKTDYDTREYSSSK 1452
Query: 140 HSESKKEHHRKKVSGSSG-------------ELPLEDGGSHKSKKMKPLYVNTETLTLRE 186
+ K E R+K S S E L G+ SKK N+ R+
Sbjct: 1453 RRDEKNELTRRKDSPSRNKDSASGQKNKPREERDLPKKGTGDSKKS-----NSSPSRDRK 1507
Query: 187 PDGLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHELQSFLK 246
P K + + SVD+ + + +++K+S+ ++ +L E Q
Sbjct: 1508 PHDHKATYDTKRPNEETKSVDKNPCKDREKHVLEARNNKESSGNKLLYILNPPETQ---- 1563
Query: 247 TARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGGELEAGE 306
K+ + S+ P+ S +S+ + + D + EP ESDS S
Sbjct: 1564 -VEKEQITGQIDKSTVKPKPQLSHSSRLSSDLTRETDEAAFEPDYNESDSESN------- 1615
Query: 307 LVIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAV-PVGEVTVTSGPPPS 365
+ K++ KD K+K K+K SL +AV VG S PS
Sbjct: 1616 ---------VSVKEEESSGNISKDL---KDKIVEKAKESLDTAAVVQVGISRNQSHSSPS 1663
Query: 366 IPYAGAAAPPLPLPGLHTDG-------HSEKKKKKEEKDKERERGEKPKKKNMSAYQV 416
+ + + +P H+ S+KKKKK+EK K ++ + K K + +V
Sbjct: 1664 VSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKKKEKKKHKKHKKHKKHKKHAGTEV 1721
Score = 40.4 bits (93), Expect = 0.005
Identities = 45/219 (20%), Positives = 79/219 (36%), Gaps = 31/219 (14%)
Query: 119 PLAAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVSGSSGELPLEDGGSHKSKKMKPLYVN 178
P A G K +K + + + ++KV G P + K+K+ P N
Sbjct: 978 PKAKGDKTKRKNDGSAVSKKENIVKPAKGPQEKVDGERERSPRSEPPIKKAKEETPKTDN 1037
Query: 179 TETLTLREPDGLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLG 238
T++ + + D K+ +P++ S S E P ++ VKK K + E
Sbjct: 1038 TKSSSSSQKD---EKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDVKSE------- 1087
Query: 239 HELQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSS 298
K K+ K+ + + G + E + D ES S
Sbjct: 1088 -------KLTTKEEKAKKPNEKNKPLDNKGEKRKRKTEEKGVDKDF--------ESSSMK 1132
Query: 299 GGELEAGELVIDDSYREIKKKKKSKKSKKKKDKEKHKEK 337
+LE E+V + K+K + +K D+ K+K
Sbjct: 1133 ISKLEVTEIV------KPSPKRKMEPDTEKMDRTPEKDK 1165
Score = 37.7 bits (86), Expect = 0.031
Identities = 89/379 (23%), Positives = 136/379 (35%), Gaps = 94/379 (24%)
Query: 164 GGSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKS 223
G SH+S+ + Y E L+ R DG K KEK S + + + K
Sbjct: 852 GQSHRSRNIGSNY--PEKLSAR--DGHNQKDNTKSKEKESENAPGDG------KGNKHKK 901
Query: 224 SKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLD 283
+K + E+ L EL L+T+RK + + G E +D+ S
Sbjct: 902 HRKRRKGEESEGFLNPEL---LETSRKSREPT-------GVEENKTDSLFVLPSRDDATP 951
Query: 284 LSGLEPILVESDSSSGGELEAGELVIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSK 343
+ EP+ ES I K S+K K+++DK K K K+K
Sbjct: 952 VRD-EPMDAES---------------------ITFKSVSEKDKRERDKPKAKG---DKTK 986
Query: 344 RSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKKEEKDKERERG 403
R SAV E V P P DG E+ + E K+ +
Sbjct: 987 RKNDGSAVSKKENIVK---------------PAKGPQEKVDGERERSPRSEPPIKKAKE- 1030
Query: 404 EKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQ----- 458
E PK N + K+ ++T G SK E + P K++ + K
Sbjct: 1031 ETPKTDNTKSSSSSQKDEKIT------GTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1084
Query: 459 KAQYLQHKQNKAEATTVKRKASSSEG-------------------SMKVKASSVGVL--- 496
K++ L K+ KA+ K K ++G SMK+ V +
Sbjct: 1085 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRKTEEKGVDKDFESSSMKISKLEVTEIVKP 1144
Query: 497 SPQKKSPPTTMLLPASPAK 515
SP++K P T + +P K
Sbjct: 1145 SPKRKMEPDTEKMDRTPEK 1163
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
Length = 1792
Score = 51.6 bits (122), Expect = 2e-06
Identities = 87/404 (21%), Positives = 145/404 (35%), Gaps = 63/404 (15%)
Query: 29 SQREKKRSYKDFLREEEEIAAQVRNSSKKKLKDSELYFLG------TDTHKKKRKHSSDD 82
S + +K S D L E+ + ++S + + D T KK + + +
Sbjct: 1422 STQPEKESNLDRLNEQGNFKSLSQSSKEARTSDKHDSTRASSNKDFTPNRDKKTDYDTRE 1481
Query: 83 YYYGDISSLESSQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSSGSSSHSE 142
Y ++ ++K S ++ D+A P P K TG+ +SS S
Sbjct: 1482 YSSSKRRDEKNELTRRKDSPSRNKDSASGQKN---KPREERDLPKKGTGDSKKSNSSPSR 1538
Query: 143 SKKEHHRKKVSGSSGELPLEDGGSHKSKKMKPLYVNT-ETLTLREPDGLKMKLILSP--- 198
+K H K + + P E+ S K + E +E G K+ IL+P
Sbjct: 1539 DRKPHDHKATYDT--KRPNEETKSVDKNPCKDREKHVLEARNNKESSGNKLLYILNPPET 1596
Query: 199 ---KEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLG--HELQSFLKTARKKHK 253
KE+ + +D+ + + Q + + S R+ A +E S + K+ +
Sbjct: 1597 QVEKEQITGQIDKSTVKPKPQLSHSSRLSSDLTRETDEAAFEPDYNESDSESNVSVKEEE 1656
Query: 254 SSS-------DAHSSPGPEGCGSDAS-QFAESHSANLDLSGLEPILVESDSSSGGELEAG 305
SS D E + A Q S + + + P S S S +
Sbjct: 1657 SSGNISKDLKDKIVEKAKESLDTAAVVQVGISRNQSHSSPSVSPSRSHSPSGSQTRSHSS 1716
Query: 306 ELVIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPS 365
+S KKKKK +K K KK K+ K K+H+ ++ L S
Sbjct: 1717 SASSAESQDSKKKKKKKEKKKHKKHKKHKKHKKHAGTEVELEKS---------------- 1760
Query: 366 IPYAGAAAPPLPLPGLHTDGHSEKKKK-KEEKDKERERGEKPKK 408
H KKKK K+ KDKE+E+ + +K
Sbjct: 1761 ------------------QKHKHKKKKSKKNKDKEKEKEKDDQK 1786
Score = 47.0 bits (110), Expect = 5e-05
Identities = 93/418 (22%), Positives = 157/418 (37%), Gaps = 67/418 (16%)
Query: 30 QREKKRSYKDFLREEEEIAAQVRNSSKKKLKDSELYFLGTDTHKKKR------KHSSDDY 83
Q+ K + ++ E + + +S K K KD + L + +K++ K S+ D
Sbjct: 1374 QKFTKDVSHEIIQHEVKSSKNSASSEKGKTKDRDYSVLEKENPEKRKNSTQPEKESNLDR 1433
Query: 84 Y--YGDISSLESSQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTG--EKSSGSSS 139
G+ SL S K+ + S + A +S KKT + SS
Sbjct: 1434 LNEQGNFKSLSQSSKEARTSDKHDSTRA-------SSNKDFTPNRDKKTDYDTREYSSSK 1486
Query: 140 HSESKKEHHRKKVSGSSG-------------ELPLEDGGSHKSKKMKPLYVNTETLTLRE 186
+ K E R+K S S E L G+ SKK N+ R+
Sbjct: 1487 RRDEKNELTRRKDSPSRNKDSASGQKNKPREERDLPKKGTGDSKKS-----NSSPSRDRK 1541
Query: 187 PDGLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHELQSFLK 246
P K + + SVD+ + + +++K+S+ ++ +L E Q
Sbjct: 1542 PHDHKATYDTKRPNEETKSVDKNPCKDREKHVLEARNNKESSGNKLLYILNPPETQ---- 1597
Query: 247 TARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGGELEAGE 306
K+ + S+ P+ S +S+ + + D + EP ESDS S
Sbjct: 1598 -VEKEQITGQIDKSTVKPKPQLSHSSRLSSDLTRETDEAAFEPDYNESDSESN------- 1649
Query: 307 LVIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAV-PVGEVTVTSGPPPS 365
+ K++ KD K+K K+K SL +AV VG S PS
Sbjct: 1650 ---------VSVKEEESSGNISKDL---KDKIVEKAKESLDTAAVVQVGISRNQSHSSPS 1697
Query: 366 IPYAGAAAPPLPLPGLHTDG-------HSEKKKKKEEKDKERERGEKPKKKNMSAYQV 416
+ + + +P H+ S+KKKKK+EK K ++ + K K + +V
Sbjct: 1698 VSPSRSHSPSGSQTRSHSSSASSAESQDSKKKKKKKEKKKHKKHKKHKKHKKHAGTEV 1755
Score = 40.4 bits (93), Expect = 0.005
Identities = 45/219 (20%), Positives = 79/219 (36%), Gaps = 31/219 (14%)
Query: 119 PLAAGSKPSKKTGEKSSGSSSHSESKKEHHRKKVSGSSGELPLEDGGSHKSKKMKPLYVN 178
P A G K +K + + + ++KV G P + K+K+ P N
Sbjct: 1012 PKAKGDKTKRKNDGSAVSKKENIVKPAKGPQEKVDGERERSPRSEPPIKKAKEETPKTDN 1071
Query: 179 TETLTLREPDGLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLG 238
T++ + + D K+ +P++ S S E P ++ VKK K + E
Sbjct: 1072 TKSSSSSQKD---EKITGTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDVKSE------- 1121
Query: 239 HELQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSS 298
K K+ K+ + + G + E + D ES S
Sbjct: 1122 -------KLTTKEEKAKKPNEKNKPLDNKGEKRKRKTEEKGVDKDF--------ESSSMK 1166
Query: 299 GGELEAGELVIDDSYREIKKKKKSKKSKKKKDKEKHKEK 337
+LE E+V + K+K + +K D+ K+K
Sbjct: 1167 ISKLEVTEIV------KPSPKRKMEPDTEKMDRTPEKDK 1199
Score = 37.7 bits (86), Expect = 0.031
Identities = 89/379 (23%), Positives = 136/379 (35%), Gaps = 94/379 (24%)
Query: 164 GGSHKSKKMKPLYVNTETLTLREPDGLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKS 223
G SH+S+ + Y E L+ R DG K KEK S + + + K
Sbjct: 886 GQSHRSRNIGSNY--PEKLSAR--DGHNQKDNTKSKEKESENAPGDG------KGNKHKK 935
Query: 224 SKKSARDEQGALLLGHELQSFLKTARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLD 283
+K + E+ L EL L+T+RK + + G E +D+ S
Sbjct: 936 HRKRRKGEESEGFLNPEL---LETSRKSREPT-------GVEENKTDSLFVLPSRDDATP 985
Query: 284 LSGLEPILVESDSSSGGELEAGELVIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSK 343
+ EP+ ES I K S+K K+++DK K K K+K
Sbjct: 986 VRD-EPMDAES---------------------ITFKSVSEKDKRERDKPKAKG---DKTK 1020
Query: 344 RSLGLSAVPVGEVTVTSGPPPSIPYAGAAAPPLPLPGLHTDGHSEKKKKKEEKDKERERG 403
R SAV E V P P DG E+ + E K+ +
Sbjct: 1021 RKNDGSAVSKKENIVK---------------PAKGPQEKVDGERERSPRSEPPIKKAKE- 1064
Query: 404 EKPKKKNMSAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQLPEKDKLIWKQ----- 458
E PK N + K+ ++T G SK E + P K++ + K
Sbjct: 1065 ETPKTDNTKSSSSSQKDEKIT------GTPRKAHSKSAKEHQETKPVKEEKVKKDYSKDV 1118
Query: 459 KAQYLQHKQNKAEATTVKRKASSSEG-------------------SMKVKASSVGVL--- 496
K++ L K+ KA+ K K ++G SMK+ V +
Sbjct: 1119 KSEKLTTKEEKAKKPNEKNKPLDNKGEKRKRKTEEKGVDKDFESSSMKISKLEVTEIVKP 1178
Query: 497 SPQKKSPPTTMLLPASPAK 515
SP++K P T + +P K
Sbjct: 1179 SPKRKMEPDTEKMDRTPEK 1197
>gi|117553584 adaptor-related protein complex 3, delta 1 subunit
isoform 1 [Homo sapiens]
Length = 1112
Score = 51.2 bits (121), Expect = 3e-06
Identities = 84/396 (21%), Positives = 148/396 (37%), Gaps = 83/396 (20%)
Query: 187 PDGLKMKLILSPKEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHELQSFLK 246
P+GL + ++ S S DE ++ + + S DE+ EL +
Sbjct: 527 PEGLDLDAWINEPLSDSESEDERPRAVFHEEEQRRPKHRPSEADEE-------ELAR-RR 578
Query: 247 TARKKHKSSSDAH--SSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGGELEA 304
ARK+ ++++ + SSP P+ D +DLS P+ V G +
Sbjct: 579 EARKQEQANNPFYIKSSPSPQKRYQDTPGVEHIPVVQIDLS--VPLKVP-----GLPMSD 631
Query: 305 GELVIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTS---- 360
+ +++ R +K +K K+ KK+K+KEK ++RHS P +V + +
Sbjct: 632 QYVKLEEERRHRQKLEKDKRRKKRKEKEKKGKRRHSSLPTESDEDIAPAQQVDIVTEEMP 691
Query: 361 ---------GPPPSIPYAG-------------------------AAAPPLPLPGLHTDGH 386
P+ PY + +P +P +
Sbjct: 692 ENALPSDEDDKDPNDPYRALDIDLDKPLADSEKLPIQKHRNTETSKSPEKDVPMVEKKSK 751
Query: 387 SEKKKKKEEKDKERERGEKPKKKNMSAYQVFCKEYR-----VTIVADHPGIDFGELSKKL 441
KKK+K+ K+KER++ +K +K+ + F A P D E +K
Sbjct: 752 KPKKKEKKHKEKERDKEKKKEKEKKAEDLDFWLSTTPPPAPAPAPAPVPSTDECEDAKTE 811
Query: 442 AEVWKQLPE-KDKLIWKQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQK 500
A+ + E +D+ K + +H++ K E T K+K+ K
Sbjct: 812 AQGEEDDAEGQDQDKKSPKPKKKKHRKEKEERTKGKKKS--------------------K 851
Query: 501 KSPPTTMLLPASPAK--APETEPIDVAAHLQLLGES 534
K PP + P + APE E + + LL E+
Sbjct: 852 KQPPGSEEAAGEPVQNGAPEEEQLPPESSYSLLAEN 887
Score = 30.8 bits (68), Expect = 3.7
Identities = 67/360 (18%), Positives = 124/360 (34%), Gaps = 44/360 (12%)
Query: 25 AAGRSQREKKRSYKDFLREEEEIAAQVRNSSKKKLKDSELYFLGTDTHKKKRKHSSDDYY 84
A + +++ ++ +EEE+A R ++K+ + + +++ + +KR +
Sbjct: 552 AVFHEEEQRRPKHRPSEADEEELAR--RREARKQEQANNPFYIKSSPSPQKRYQDTPGVE 609
Query: 85 YGDISSLESSQKKKKKSSPQSTD-TAMDLLKAITSPLAAGSKPSKKTGEKSSGSSSHSES 143
+ + ++ S K P S ++ + L + K+ ++ G HS
Sbjct: 610 HIPVVQIDLSVPLKVPGLPMSDQYVKLEEERRHRQKLEKDKRRKKRKEKEKKGKRRHSSL 669
Query: 144 KKEHHR-----KKVSGSSGELPLEDGGSHKSKKMKPLYVNTETLTLREPDGLKMKLILSP 198
E ++V + E+P S + K + L +P KL +
Sbjct: 670 PTESDEDIAPAQQVDIVTEEMPENALPSDEDDKDPNDPYRALDIDLDKPLADSEKLPIQK 729
Query: 199 KEKGSSSVDEESFQYPSQQATVKKSSKKSARDEQGALLLGHELQSFLKTARKKHKSSSDA 258
+S E P + KK KK + ++ E K ++K D
Sbjct: 730 HRNTETSKSPEK-DVPMVEKKSKKPKKKEKKHKE------KERDKEKKKEKEKKAEDLDF 782
Query: 259 HSS----PGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSYR 314
S P P + E A + G E D + G D +
Sbjct: 783 WLSTTPPPAPAPAPAPVPSTDECEDAKTEAQG------EEDDAEG----------QDQDK 826
Query: 315 EIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTSGP-----PPSIPYA 369
+ K KK K K+K+++ K K+ KSK+ S GE P PP Y+
Sbjct: 827 KSPKPKKKKHRKEKEERTKGKK----KSKKQPPGSEEAAGEPVQNGAPEEEQLPPESSYS 882
>gi|169212060 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 51.2 bits (121), Expect = 3e-06
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 393 KEEKDKERERGEKPKKKNM-----SAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQ 447
+E KD +G K K N S + +FC E+ + +PGI G+++KKL E+WK
Sbjct: 73 QEIKDYGPAKGGKKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKN 132
Query: 448 LPEKDKLIWKQKAQYLQHKQNKAEAT-TVKRKASSSEGSMKVKASSV 493
L + +K + +A L+ K K A K K+ ++G KV V
Sbjct: 133 LNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSDGAKGPAKVAQKKV 179
Score = 35.8 bits (81), Expect = 0.12
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 404 EKPKKKNMSAYQVFCKEYRVTIVADHPG--IDFGELSKKLAEVWKQLPEKDK-----LIW 456
+KPK K MSAY F + R +P I+F E SKK +E WK + +K+K L
Sbjct: 7 KKPKGK-MSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAK 65
Query: 457 KQKAQYLQHKQNKAEATTVKRK 478
K Y Q ++ A K+K
Sbjct: 66 ADKVHYDQEIKDYGPAKGGKKK 87
>gi|239745831 PREDICTED: high mobility group protein B3-like
protein-like [Homo sapiens]
Length = 207
Score = 51.2 bits (121), Expect = 3e-06
Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 393 KEEKDKERERGEKPKKKNM-----SAYQVFCKEYRVTIVADHPGIDFGELSKKLAEVWKQ 447
+E KD +G K K N S + +FC E+ + +PGI G+++KKL E+WK
Sbjct: 73 QEIKDYGPAKGGKKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGIPIGDVAKKLGEMWKN 132
Query: 448 LPEKDKLIWKQKAQYLQHKQNKAEAT-TVKRKASSSEGSMKVKASSV 493
L + +K + +A L+ K K A K K+ ++G KV V
Sbjct: 133 LNDSEKQPYITQAAKLKEKYEKDVAVYKSKGKSDGAKGPAKVAQKKV 179
Score = 35.8 bits (81), Expect = 0.12
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 404 EKPKKKNMSAYQVFCKEYRVTIVADHPG--IDFGELSKKLAEVWKQLPEKDK-----LIW 456
+KPK K MSAY F + R +P I+F E SKK +E WK + +K+K L
Sbjct: 7 KKPKGK-MSAYAFFVQTCREEHKKKNPKVPINFAEFSKKCSERWKTMSKKEKSKFNELAK 65
Query: 457 KQKAQYLQHKQNKAEATTVKRK 478
K Y Q ++ A K+K
Sbjct: 66 ADKVHYDQEIKDYGPAKGGKKK 87
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 51.2 bits (121), Expect = 3e-06
Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 39/173 (22%)
Query: 246 KTARKKHKSSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGGELEAG 305
K +K+HKSSS + SS SD+ ++S SDS S E
Sbjct: 185 KEEKKRHKSSSSSSSSSSDSDSSSDSQSSSDS----------------SDSESATE---- 224
Query: 306 ELVIDDSYREIKKKKKSKKSKKKKDKEKHKEKRHSKSKRS--LGLSAVPVGEVTVTSGPP 363
+ ++ KKK + K KK+K+K K+ + S S S L A P V PP
Sbjct: 225 -----EKSKKRKKKHRKNSRKHKKEKKKRKKSKKSASSESEAENLEAQPQSTVRPEEIPP 279
Query: 364 -PSIPYAGAAAPPLPLPGLHTDGHSEKKKKKEEKDKERERGEKPKKKNMSAYQ 415
P + +PP +K+++ +++ERER P ++YQ
Sbjct: 280 IPENRFLMRKSPP-----------KADEKERKNRERERERECNPPNSQPASYQ 321
Score = 35.4 bits (80), Expect = 0.15
Identities = 74/406 (18%), Positives = 145/406 (35%), Gaps = 64/406 (15%)
Query: 89 SSLESSQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSS---------GSSS 139
S ++ +KK+ KSS S+ ++ D + S ++ S S+ E+ S S
Sbjct: 181 SKVKKEEKKRHKSSSSSSSSSSDSDSSSDSQSSSDSSDSESATEEKSKKRKKKHRKNSRK 240
Query: 140 HSESKKEHHRKKVSGSS----GELPLEDGGSHKSKKMKPLYVNTETLTLREPDGLKMKLI 195
H + KK+ + K S SS L + + + +++ P+ N + P
Sbjct: 241 HKKEKKKRKKSKKSASSESEAENLEAQPQSTVRPEEIPPIPENRFLMRKSPPKA------ 294
Query: 196 LSPKEKGSSSVDEESFQYP--SQQATVKKSSKKSARDEQGALLLGHELQSFLKTARKKHK 253
KE+ + + E P SQ A+ + ++ G + G + + +R + +
Sbjct: 295 -DEKERKNRERERERECNPPNSQPASYQ---RRLLVTRSGRKIKGRGPRRYRTPSRSRSR 350
Query: 254 SSSDAHSSPGPEGCGSDASQFAESHSANLDLSGLEPILVESDSSSGGELEAGELVIDDSY 313
+P +Q S + G + L E + + E I D +
Sbjct: 351 DRFRRSETPPHWRQEMQRAQRMRVSSGERWIKGDKSELNEIKENQRSPVRVKERKITD-H 409
Query: 314 REIKKKKKSKKSKKKKDKEKHKEKRHSKSKRSLGLSAVPVGEVTVTSGPPPSIPYAGAAA 373
R + + K K+KK K+ + +R+
Sbjct: 410 RNVSESPNRKNEKEKKVKDHKSNSKERDIRRN---------------------------- 441
Query: 374 PPLPLPGLHTDGHSEKKKKKEEKDKERERG-EKPKKKNMSAYQVFCKEYRVTIVADHPGI 432
D + K KK K K R + EK K K + +E R+ + G
Sbjct: 442 -------SEKDDKYKNKVKKRAKSKSRSKSKEKSKSKERDSKHNRNEEKRMR--SRSKGR 492
Query: 433 DFGELSKKLAEVWKQLPEKDKLIWKQKAQYLQHKQNKAEATTVKRK 478
D + +K + + ++++ K+K++ L+ K N+ + + K K
Sbjct: 493 DHENVKEKEKQSDSKGKDQERSRSKEKSKQLESKSNEHDHSKSKEK 538
Score = 32.3 bits (72), Expect = 1.3
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 11/131 (8%)
Query: 27 GRSQREKKRSYKDFLREEEEIAAQVRNSSKKKLKDSELYFLGTDTHKKKRKHSSDDYYYG 86
GRS+ + +R + R E +Q RN K + ++S+ ++ +KR +S +
Sbjct: 614 GRSRSKDRRRRRRDSRSSEREESQSRNKDKYRNQESKSSHRKENSESEKRMYSKSRDHNS 673
Query: 87 DISSLE------SSQKKKKKSSPQSTDTAMDLLKAITSPLAAGSKPSKKTGEKSSGSSS- 139
+S E S K K S Q + +LK S +K +KS G +
Sbjct: 674 SNNSREKKADRDQSPFSKIKQSSQDNELKSSMLKNKEDEKIRSS--VEKENQKSKGQEND 731
Query: 140 --HSESKKEHH 148
H ++KK H
Sbjct: 732 HVHEKNKKFDH 742
Score = 29.6 bits (65), Expect = 8.3
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 457 KQKAQYLQHKQNKAEATTVKRKASSSEGSMKVKASSVGVLSPQK--KSPPTTMLLPASPA 514
K + +HK+ K + K+ ASS + ++A + P++ P L+ SP
Sbjct: 233 KHRKNSRKHKKEKKKRKKSKKSASSESEAENLEAQPQSTVRPEEIPPIPENRFLMRKSPP 292
Query: 515 KAPETE 520
KA E E
Sbjct: 293 KADEKE 298
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.306 0.124 0.339
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,389,176
Number of Sequences: 37866
Number of extensions: 1305924
Number of successful extensions: 14312
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 472
Number of HSP's that attempted gapping in prelim test: 8830
Number of HSP's gapped (non-prelim): 3913
length of query: 601
length of database: 18,247,518
effective HSP length: 108
effective length of query: 493
effective length of database: 14,157,990
effective search space: 6979889070
effective search space used: 6979889070
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.