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Search of human proteins with 5032243
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5032243 makorin ring finger protein 3 [Homo sapiens]
(507 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5032243 makorin ring finger protein 3 [Homo sapiens] 1065 0.0
gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens] 472 e-133
gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens] 322 7e-88
gi|32880199 makorin ring finger protein 2 [Homo sapiens] 291 1e-78
gi|126116565 MYC binding protein 2 [Homo sapiens] 43 8e-04
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ... 42 0.002
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ... 42 0.002
gi|5902054 ring finger protein 5 [Homo sapiens] 41 0.003
gi|73747840 LON peptidase N-terminal domain and ring finger 3 is... 40 0.005
gi|37622896 LON peptidase N-terminal domain and ring finger 3 is... 40 0.005
gi|118150660 erythropoietin 4 immediate early response [Homo sap... 40 0.007
gi|21361493 ring finger protein 141 [Homo sapiens] 39 0.015
gi|110832843 TBP-associated factor 4 [Homo sapiens] 38 0.019
gi|112421127 tripartite motif-containing 58 [Homo sapiens] 38 0.019
gi|71043932 zinc finger, SWIM domain containing 2 [Homo sapiens] 38 0.025
gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens] 37 0.032
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 37 0.032
gi|46411174 muscleblind-like 1 isoform g [Homo sapiens] 37 0.042
gi|46411172 muscleblind-like 1 isoform f [Homo sapiens] 37 0.042
gi|46411166 muscleblind-like 1 isoform c [Homo sapiens] 37 0.042
gi|46411164 muscleblind-like 1 isoform b [Homo sapiens] 37 0.042
gi|41281591 muscleblind-like 1 isoform a [Homo sapiens] 37 0.042
gi|62548864 Rho guanine nucleotide exchange factor 10 [Homo sapi... 37 0.042
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 37 0.055
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 36 0.072
gi|117676384 splicing factor, arginine/serine-rich 2, interactin... 36 0.072
gi|188497705 BRCA1 associated protein [Homo sapiens] 36 0.072
gi|12232413 poly ADP-ribose polymerase 12 [Homo sapiens] 36 0.072
gi|154146199 sal-like 3 [Homo sapiens] 36 0.072
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens] 36 0.072
>gi|5032243 makorin ring finger protein 3 [Homo sapiens]
Length = 507
Score = 1065 bits (2753), Expect = 0.0
Identities = 507/507 (100%), Positives = 507/507 (100%)
Query: 1 MEEPAAPSEAHEAAGAQAGAEAAREGVSGPDLPVCEPSGESAAPDSALPHAARGWAPFPV 60
MEEPAAPSEAHEAAGAQAGAEAAREGVSGPDLPVCEPSGESAAPDSALPHAARGWAPFPV
Sbjct: 1 MEEPAAPSEAHEAAGAQAGAEAAREGVSGPDLPVCEPSGESAAPDSALPHAARGWAPFPV 60
Query: 61 APVPAHLRRGGLRPAPASGGGAWPSPLPSRSSGIWTKQIICRYYIHGQCKEGENCRYSHD 120
APVPAHLRRGGLRPAPASGGGAWPSPLPSRSSGIWTKQIICRYYIHGQCKEGENCRYSHD
Sbjct: 61 APVPAHLRRGGLRPAPASGGGAWPSPLPSRSSGIWTKQIICRYYIHGQCKEGENCRYSHD 120
Query: 121 LSGRKMATEGGVSPPGASAGGGPSTAAHIEPPTQEVAEAPPAASSLSLPVIGSAAERGFF 180
LSGRKMATEGGVSPPGASAGGGPSTAAHIEPPTQEVAEAPPAASSLSLPVIGSAAERGFF
Sbjct: 121 LSGRKMATEGGVSPPGASAGGGPSTAAHIEPPTQEVAEAPPAASSLSLPVIGSAAERGFF 180
Query: 181 EAERDNADRGAAGGAGVESWADAIEFVPGQPYRGRWVASAPEAPLQSSETERKQMAVGSG 240
EAERDNADRGAAGGAGVESWADAIEFVPGQPYRGRWVASAPEAPLQSSETERKQMAVGSG
Sbjct: 181 EAERDNADRGAAGGAGVESWADAIEFVPGQPYRGRWVASAPEAPLQSSETERKQMAVGSG 240
Query: 241 LRFCYYASRGVCFRGESCMYLHGDICDMCGLQTLHPMDAAQREEHMRACIEAHEKDMELS 300
LRFCYYASRGVCFRGESCMYLHGDICDMCGLQTLHPMDAAQREEHMRACIEAHEKDMELS
Sbjct: 241 LRFCYYASRGVCFRGESCMYLHGDICDMCGLQTLHPMDAAQREEHMRACIEAHEKDMELS 300
Query: 301 FAVQRGMDKVCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKS 360
FAVQRGMDKVCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKS
Sbjct: 301 FAVQRGMDKVCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKS 360
Query: 361 CPQCRVTSELVIPSEFWVEEEEEKQKLIQQYKEAMSNKACRYFAEGRGNCPFGDTCFYKH 420
CPQCRVTSELVIPSEFWVEEEEEKQKLIQQYKEAMSNKACRYFAEGRGNCPFGDTCFYKH
Sbjct: 361 CPQCRVTSELVIPSEFWVEEEEEKQKLIQQYKEAMSNKACRYFAEGRGNCPFGDTCFYKH 420
Query: 421 EYPEGWGDEPPGPGGGSFSAYWHQLVEPVRMGEGNMLYKSIKKELVVLRLASLLFKRFLS 480
EYPEGWGDEPPGPGGGSFSAYWHQLVEPVRMGEGNMLYKSIKKELVVLRLASLLFKRFLS
Sbjct: 421 EYPEGWGDEPPGPGGGSFSAYWHQLVEPVRMGEGNMLYKSIKKELVVLRLASLLFKRFLS 480
Query: 481 LRDELPFSEDQWDLLHYELEEYFNLIL 507
LRDELPFSEDQWDLLHYELEEYFNLIL
Sbjct: 481 LRDELPFSEDQWDLLHYELEEYFNLIL 507
>gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens]
Length = 482
Score = 472 bits (1215), Expect = e-133
Identities = 257/504 (50%), Positives = 318/504 (63%), Gaps = 39/504 (7%)
Query: 20 AEAAREGVSGPDLPVCEPSGESAAPDSALPHAARGWAPFPVAPVPAHLRRGGLRPAPASG 79
AEAA G + SG AA +A AA P P P+ GG + SG
Sbjct: 2 AEAATPGTTATT------SGAGAAAATA---AAASPTPIPTVTAPSLGAGGGGGGSDGSG 52
Query: 80 GGAWPSPLPSRSSGIWTKQIICRYYIHGQCKEGENCRYSHDLSGRKMATEGGVSPPGASA 139
GG WTKQ+ CRY++HG CKEG+NCRYSHDLS + G
Sbjct: 53 GG-------------WTKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCI 99
Query: 140 GGGPSTAAHIEPPTQEVAEAPP-------AASSLSLPVIGSAAERGFFEAERDNADRGAA 192
G H +P QE A A AASS ++G E EAE N++ A
Sbjct: 100 YGDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNF-AT 158
Query: 193 GGAGVESWADAIEFVPGQPYRGRWVASAPEAPLQSS----ETERKQMAVGSGLRFCYYAS 248
GAG E W +AIEFVPGQPY GR S EAPLQ S E+E++Q AV + + C YA+
Sbjct: 159 VGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAA 218
Query: 249 RGVCFRGESCMYLHGDICDMCGLQTLHPMDAAQREEHMRACIEAHEKDMELSFAVQRGMD 308
G C GE+C+YLHGD CDMCGLQ LHPMDAAQR +H+++CIEAHEKDMELSFAVQR D
Sbjct: 219 VGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKD 278
Query: 309 KVCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCPQCRVTS 368
VCGICMEVVYEKANP++RRFGILSNCNH++C++CIR+WRSA+QFE++I+KSCP+CR+TS
Sbjct: 279 MVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIKSCPECRITS 338
Query: 369 ELVIPSEFWVEEEEEKQKLIQQYKEAMSNKACRYFAEGRGNCPFGDTCFYKHEYPEGWGD 428
VIPSE+WVEE+EEKQKLI +YKEAMSNKACRYF EGRG+CPFG CFYKH YP+G +
Sbjct: 339 NFVIPSEYWVEEKEEKQKLILKYKEAMSNKACRYFDEGRGSCPFGGNCFYKHAYPDGRRE 398
Query: 429 EPPGPGGGSFSAYWHQ----LVEPVRMGEGNMLYKSIKKELVVLRLASLLFKRFLS-LRD 483
EP G+ S Y Q E + E + + + ++E+V L +L + D
Sbjct: 399 EPQRQKVGTSSRYRAQRRNHFWELIEERENSNPFDNDEEEVVTFELGEMLLMLLAAGGDD 458
Query: 484 ELPFSEDQWDLLHYELEEYFNLIL 507
EL SED+WDL H ELE++++L L
Sbjct: 459 ELTDSEDEWDLFHDELEDFYDLDL 482
>gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens]
Length = 329
Score = 322 bits (824), Expect = 7e-88
Identities = 178/351 (50%), Positives = 216/351 (61%), Gaps = 34/351 (9%)
Query: 20 AEAAREGVSGPDLPVCEPSGESAAPDSALPHAARGWAPFPVAPVPAHLRRGGLRPAPASG 79
AEAA G + SG AA +A AA P P P+ GG + SG
Sbjct: 2 AEAATPGTTATT------SGAGAAAATA---AAASPTPIPTVTAPSLGAGGGGGGSDGSG 52
Query: 80 GGAWPSPLPSRSSGIWTKQIICRYYIHGQCKEGENCRYSHDLSGRKMATEGGVSPPGASA 139
GG WTKQ+ CRY++HG CKEG+NCRYSHDLS + G
Sbjct: 53 GG-------------WTKQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCI 99
Query: 140 GGGPSTAAHIEPPTQEVAEAPP-------AASSLSLPVIGSAAERGFFEAERDNADRGAA 192
G H +P QE A A AASS ++G E EAE N++ A
Sbjct: 100 YGDRCRYEHSKPLKQEEATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNF-AT 158
Query: 193 GGAGVESWADAIEFVPGQPYRGRWVASAPEAPLQSS----ETERKQMAVGSGLRFCYYAS 248
GAG E W +AIEFVPGQPY GR S EAPLQ S E+E++Q AV + + C YA+
Sbjct: 159 VGAGSEDWVNAIEFVPGQPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETKKQLCPYAA 218
Query: 249 RGVCFRGESCMYLHGDICDMCGLQTLHPMDAAQREEHMRACIEAHEKDMELSFAVQRGMD 308
G C GE+C+YLHGD CDMCGLQ LHPMDAAQR +H+++CIEAHEKDMELSFAVQR D
Sbjct: 219 VGECRYGENCVYLHGDSCDMCGLQVLHPMDAAQRSQHIKSCIEAHEKDMELSFAVQRSKD 278
Query: 309 KVCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVK 359
VCGICMEVVYEKANP++RRFGILSNCNH++C++CIR+WRSA+QFE++I+K
Sbjct: 279 MVCGICMEVVYEKANPSERRFGILSNCNHTYCLKCIRKWRSAKQFESKIIK 329
Score = 37.4 bits (85), Expect = 0.032
Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 49/199 (24%)
Query: 244 CYYASRGVCFRGESCMYLH-------GDIC-----------DMCGLQTLHPMDAAQREEH 285
C Y GVC G++C Y H +C D C + P+ ++EE
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSKPL---KQEE- 116
Query: 286 MRACIEAHEKDMELSFAVQRGMDKVCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIR 345
A E + S A + + G +E+ +A + F + +
Sbjct: 117 ----ATATELTTKSSLAASSSLSSIVGPLVEMNTGEAESRNSNFATVGAGSED------- 165
Query: 346 RWRSARQFENRIVKSCPQCRVTS----ELVIPSEFWVEEEEEKQKLIQQYKEAMSNKACR 401
W +A +F V P C T+ E + EE E++Q ++ K+ C
Sbjct: 166 -WVNAIEF----VPGQPYCGRTAPSCTEAPLQGSVTKEESEKEQTAVETKKQL-----CP 215
Query: 402 YFAEGRGNCPFGDTCFYKH 420
Y A G C +G+ C Y H
Sbjct: 216 YAAVGE--CRYGENCVYLH 232
Score = 30.0 bits (66), Expect = 5.2
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 400 CRYFAEGRGNCPFGDTCFYKHEYP 423
C+YF RG C +GD C Y+H P
Sbjct: 90 CKYFQ--RGYCIYGDRCRYEHSKP 111
>gi|32880199 makorin ring finger protein 2 [Homo sapiens]
Length = 416
Score = 291 bits (744), Expect = 1e-78
Identities = 148/359 (41%), Positives = 208/359 (57%), Gaps = 22/359 (6%)
Query: 96 TKQIICRYYIHGQCKEGENCRYSHDLSGRKMAT-----EGGV-----------SPPGASA 139
TKQI CRY++HG C+EG C +SHDL+ K +T + G + P A+A
Sbjct: 3 TKQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDHTRPSAAA 62
Query: 140 GGGPSTAAHIEPPTQEVAEAPPAASSLSLPVIGSAAERGFFEAERDNADRGAAGGAGVES 199
GG T AH P + PP+ + S+ S + DR +G A ++
Sbjct: 63 GGAVGTMAHSVPSPAFHSPHPPSEVTASIVKTNSHEPGKREKRTLVLRDRNLSGMAERKT 122
Query: 200 WADAIEFVPG-----QPYRGRWVASAPEAPLQSSETERKQMAVGSGLRFCYYASRGVCFR 254
+ PG QP S +A + + + + C YA+ G C
Sbjct: 123 QPSMVSN-PGSCSDPQPSPEMKPHSYLDAIRSGLDDVEASSSYSNEQQLCPYAAAGECRF 181
Query: 255 GESCMYLHGDICDMCGLQTLHPMDAAQREEHMRACIEAHEKDMELSFAVQRGMDKVCGIC 314
G++C+YLHG++C++C LQ LHP D QR+ H + C+ E +ME +FA Q DKVC IC
Sbjct: 182 GDACVYLHGEVCEICRLQVLHPFDPEQRKAHEKICMLTFEHEMEKAFAFQASQDKVCSIC 241
Query: 315 MEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCPQCRVTSELVIPS 374
MEV+ EKA+ ++RRFGILSNCNH++C+ CIR+WR A+QFEN I+KSCP+CRV SE VIPS
Sbjct: 242 MEVILEKASASERRFGILSNCNHTYCLSCIRQWRCAKQFENPIIKSCPECRVISEFVIPS 301
Query: 375 EFWVEEEEEKQKLIQQYKEAMSNKACRYFAEGRGNCPFGDTCFYKHEYPEGWGDEPPGP 433
+WVE++ +K +LI+ +K+ M KAC+YF +G+G CPFG C Y+H YP+G EP P
Sbjct: 302 VYWVEDQNKKNELIEAFKQGMGKKACKYFEQGKGTCPFGSKCLYRHAYPDGRLAEPEKP 360
>gi|126116565 MYC binding protein 2 [Homo sapiens]
Length = 4640
Score = 42.7 bits (99), Expect = 8e-04
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 23/148 (15%)
Query: 275 HPMDAAQREEHMRACIEAHEKDMELSFAVQRGMDKVCGICMEVVYEKANPNDRRFGILSN 334
HP + EEH C+ +K + ++++ D +C IC A I +
Sbjct: 4357 HPCGGVKNEEHCLPCLHGCDKS---ATSLKQDADDMCMICFTEALSAAP------AIQLD 4407
Query: 335 CNHSFCIRCIRRWRSARQFENRIV---KSCPQCR------VTSELVIPSEFWVEEEEEKQ 385
C+H F ++C RR R RI SCP C+ V +L+ P + E+ K
Sbjct: 4408 CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLKDLLDPIKELYEDVRRKA 4467
Query: 386 KLIQQYK-----EAMSNKACRYFAEGRG 408
+ +Y+ EA++ R++ + G
Sbjct: 4468 LMRLEYEGLHKSEAITTPGVRFYNDPAG 4495
>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
sapiens]
Length = 258
Score = 41.6 bits (96), Expect = 0.002
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 22/97 (22%)
Query: 1 MEEPAAPSEAHEAAGAQAGAEAAREGVS---GPDLPVCEPS-GESAAPDSALPHAARGWA 56
+ AAP E EAA A + + G S G PV P G +A+P S +P
Sbjct: 62 LSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPG------ 115
Query: 57 PFPVAPVPAHLRRGGLRPAPASGGGA------WPSPL 87
P AP P+ G +PAP++G G+ WP PL
Sbjct: 116 --PPAPPPS----GDQQPAPSAGSGSTADLPEWPWPL 146
>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
sapiens]
Length = 258
Score = 41.6 bits (96), Expect = 0.002
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 22/97 (22%)
Query: 1 MEEPAAPSEAHEAAGAQAGAEAAREGVS---GPDLPVCEPS-GESAAPDSALPHAARGWA 56
+ AAP E EAA A + + G S G PV P G +A+P S +P
Sbjct: 62 LSSAAAPEEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPG------ 115
Query: 57 PFPVAPVPAHLRRGGLRPAPASGGGA------WPSPL 87
P AP P+ G +PAP++G G+ WP PL
Sbjct: 116 --PPAPPPS----GDQQPAPSAGSGSTADLPEWPWPL 146
>gi|5902054 ring finger protein 5 [Homo sapiens]
Length = 180
Score = 40.8 bits (94), Expect = 0.003
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 27/147 (18%)
Query: 311 CGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCPQCR--VTS 368
C IC+E E ++S C H +C C+ +W R + CP C+ ++
Sbjct: 27 CNICLETARE---------AVVSVCGHLYCWPCLHQWLETRPER----QECPVCKAGISR 73
Query: 369 ELVIPSEFWVEEEEEKQKLIQQYKEAMSNKACRYFAEGRGNC-PFGDTCFYKHEYPEGWG 427
E V+P ++ + +L K + R E RG PFGDT + + G G
Sbjct: 74 EKVVPLYGRGSQKPQDPRL----KTPPRPQGQRPAPESRGGFQPFGDTGGFHFSF--GVG 127
Query: 428 DEPPGPGGGSFSAYWHQLVEPVRMGEG 454
P G F+A+ EP R G G
Sbjct: 128 AFPFGFFTTVFNAH-----EPFRRGTG 149
>gi|73747840 LON peptidase N-terminal domain and ring finger 3
isoform 1 [Homo sapiens]
Length = 759
Score = 40.0 bits (92), Expect = 0.005
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 34/117 (29%)
Query: 297 MELSFAVQRGMDKVCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENR 356
+ L A D C +CM + YE + + C H+FC++C+ R
Sbjct: 453 LSLPLASFDASDLECALCMRLFYEP---------VTTPCGHTFCLKCLERCLDHN----- 498
Query: 357 IVKSCPQCR----------------VTSELVIPSEFWVEEEEEKQKLIQQYKEAMSN 397
CP C+ + EL+ ++F EE +E++KL ++ E +SN
Sbjct: 499 --AKCPLCKDGLSQCLASRKYSKNVIMEELI--AKFLPEELKERRKLYEEEMEELSN 551
>gi|37622896 LON peptidase N-terminal domain and ring finger 3
isoform 2 [Homo sapiens]
Length = 718
Score = 40.0 bits (92), Expect = 0.005
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 34/117 (29%)
Query: 297 MELSFAVQRGMDKVCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENR 356
+ L A D C +CM + YE + + C H+FC++C+ R
Sbjct: 412 LSLPLASFDASDLECALCMRLFYEP---------VTTPCGHTFCLKCLERCLDHN----- 457
Query: 357 IVKSCPQCR----------------VTSELVIPSEFWVEEEEEKQKLIQQYKEAMSN 397
CP C+ + EL+ ++F EE +E++KL ++ E +SN
Sbjct: 458 --AKCPLCKDGLSQCLASRKYSKNVIMEELI--AKFLPEELKERRKLYEEEMEELSN 510
>gi|118150660 erythropoietin 4 immediate early response [Homo
sapiens]
Length = 426
Score = 39.7 bits (91), Expect = 0.007
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 91 SSGIWTKQIICRYYIHGQCKEGENCRYSHDLS 122
S G K ++C ++ GQC +G+ C++SHDL+
Sbjct: 95 SKGADPKSVVCAFFKQGQCTKGDKCKFSHDLT 126
>gi|21361493 ring finger protein 141 [Homo sapiens]
Length = 230
Score = 38.5 bits (88), Expect = 0.015
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 19/92 (20%)
Query: 308 DKVCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCPQCRVT 367
++ C ICM D R ++ C HSFC +CI +W ++CP CR+
Sbjct: 152 EEECCICM----------DGRADLILPCAHSFCQKCIDKWSDRH-------RNCPICRL- 193
Query: 368 SELVIPSEFWVEEEEEKQKLIQQYKEAMSNKA 399
++ +E WV + + + Y M+++A
Sbjct: 194 -QMTGANESWVVSDAPTEDDMANYILNMADEA 224
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 38.1 bits (87), Expect = 0.019
Identities = 76/289 (26%), Positives = 94/289 (32%), Gaps = 73/289 (25%)
Query: 4 PAAPSE-AHEAAGAQAGAEAAREGVSGPDLP-----------------------VCEPSG 39
PAAP+E A AA A AR G GP P E S
Sbjct: 75 PAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSA 134
Query: 40 ESAAPDSALPHAARGWAPFPVAPV----PAHLR-RGGLRPAPASGGGAWPSPLPSRSSGI 94
S AP A A G P P P PA L R G P P G G P P P + +G
Sbjct: 135 GSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAG--PGPGPGPGPGPGPGPGKPAGP 192
Query: 95 WTKQ-------IICRYYIHGQCKEGENCRYSHDLSGRKMATEGGV--------------- 132
Q ++ ++ N + L K A G V
Sbjct: 193 GAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAP 252
Query: 133 ---SPPGASAGGGPSTAAHIEPPTQEVAEAP---PAASSLSLPVI--GSAAERGFFEAER 184
SPP A A P+ A PP P PA + P + +AA+ G
Sbjct: 253 AAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAA 312
Query: 185 DNADRGAAGGAGVESWADAIEFVPGQPYRGRWVASAPEAPLQSSETERK 233
A G AGV GQP G A+A AP +E+ ++
Sbjct: 313 PAPAPAAGGPAGVS----------GQP--GPGAAAAAPAPGVKAESPKR 349
>gi|112421127 tripartite motif-containing 58 [Homo sapiens]
Length = 486
Score = 38.1 bits (87), Expect = 0.019
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 9/58 (15%)
Query: 308 DKVCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCPQCR 365
D C +C++ + E + + C HSFC+RCI + V +CPQCR
Sbjct: 13 DARCPVCLDFLQEPVSVD---------CGHSFCLRCISEFCEKSDGAQGGVYACPQCR 61
>gi|71043932 zinc finger, SWIM domain containing 2 [Homo sapiens]
Length = 633
Score = 37.7 bits (86), Expect = 0.025
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 308 DKVCGICMEVVYEKANP-NDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCPQCRV 366
+ +C IC E++ EK P RFG C +S I+C++ + + N + CP CR
Sbjct: 144 EDICSICQELLLEKKLPVTFCRFG----CGNSIHIKCMKILANYQSTSNTSMLKCPLCR- 198
Query: 367 TSELVIPSEFWVEEEEEKQKLI 388
+ P + +EE + KL+
Sbjct: 199 --KEFAPLKLILEEFKNSSKLV 218
>gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens]
Length = 434
Score = 37.4 bits (85), Expect = 0.032
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 72 LRPAPASGGGAWPSPLPSRSSGIWTKQIICRYYIHGQCKEGENCRYSHDLSGRKMATEGG 131
LR A+G G P+ LP+ + ICR ++ G C+ G C++ H + GG
Sbjct: 115 LRQKVAAGLGLSPADLPNGKEEV----PICRDFLKGDCQRGAKCKFRHLQRDFEFDARGG 170
Query: 132 VSPPGASAG 140
G S G
Sbjct: 171 GGTGGGSTG 179
Score = 34.3 bits (77), Expect = 0.27
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 79 GGGAWPSPLPSRSSGIWTKQIICRYYIHGQCKEGENCRYSH 119
GGG+ + SG + ICR ++ CK G+ CRY H
Sbjct: 20 GGGSEEASGAGVGSGGASSDAICRDFLRNVCKRGKRCRYRH 60
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 37.4 bits (85), Expect = 0.032
Identities = 10/24 (41%), Positives = 20/24 (83%)
Query: 98 QIICRYYIHGQCKEGENCRYSHDL 121
++IC+Y++ G+C G++C +SHD+
Sbjct: 393 KVICKYFVEGRCTWGDHCNFSHDI 416
Score = 32.0 bits (71), Expect = 1.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 97 KQIICRYYIHGQCKEGENCRYSH 119
K+ +C++YI G C ENC Y H
Sbjct: 421 KRELCKFYITGFCARAENCPYMH 443
Score = 30.0 bits (66), Expect = 5.2
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 390 QYKEAMSNKACRYFAEGRGNCPFGDTCFYKHE 421
Q + C+YF EGR C +GD C + H+
Sbjct: 386 QQSDKKGKVICKYFVEGR--CTWGDHCNFSHD 415
Score = 29.3 bits (64), Expect = 8.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 244 CYYASRGVCFRGESCMYLHGD 264
C + G C R E+C Y+HGD
Sbjct: 425 CKFYITGFCARAENCPYMHGD 445
>gi|46411174 muscleblind-like 1 isoform g [Homo sapiens]
Length = 342
Score = 37.0 bits (84), Expect = 0.042
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 41 SAAPDSALPHAARGWAPF--PVAP--VPAHLRRGGLRPAPASGGGAWPSPLPSRSSGIWT 96
S AP A +A + P+ PV+P VPA + L AP G P+P+ ++
Sbjct: 119 SVAPSLATNASAAAFNPYLGPVSPSLVPAEI----LPTAPMLVTGNPGVPVPAAAAAAAQ 174
Query: 97 KQI------ICRYYIHGQCKEGEN-CRYSH 119
K + +CR Y G C GEN CR++H
Sbjct: 175 KLMRTDRLEVCREYQRGNCNRGENDCRFAH 204
>gi|46411172 muscleblind-like 1 isoform f [Homo sapiens]
Length = 340
Score = 37.0 bits (84), Expect = 0.042
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 41 SAAPDSALPHAARGWAPF--PVAP--VPAHLRRGGLRPAPASGGGAWPSPLPSRSSGIWT 96
S AP A +A + P+ PV+P VPA + L AP G P+P+ ++
Sbjct: 119 SVAPSLATNASAAAFNPYLGPVSPSLVPAEI----LPTAPMLVTGNPGVPVPAAAAAAAQ 174
Query: 97 KQI------ICRYYIHGQCKEGEN-CRYSH 119
K + +CR Y G C GEN CR++H
Sbjct: 175 KLMRTDRLEVCREYQRGNCNRGENDCRFAH 204
>gi|46411166 muscleblind-like 1 isoform c [Homo sapiens]
Length = 388
Score = 37.0 bits (84), Expect = 0.042
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 41 SAAPDSALPHAARGWAPF--PVAP--VPAHLRRGGLRPAPASGGGAWPSPLPSRSSGIWT 96
S AP A +A + P+ PV+P VPA + L AP G P+P+ ++
Sbjct: 119 SVAPSLATNASAAAFNPYLGPVSPSLVPAEI----LPTAPMLVTGNPGVPVPAAAAAAAQ 174
Query: 97 KQI------ICRYYIHGQCKEGEN-CRYSH 119
K + +CR Y G C GEN CR++H
Sbjct: 175 KLMRTDRLEVCREYQRGNCNRGENDCRFAH 204
>gi|46411164 muscleblind-like 1 isoform b [Homo sapiens]
Length = 370
Score = 37.0 bits (84), Expect = 0.042
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 41 SAAPDSALPHAARGWAPF--PVAP--VPAHLRRGGLRPAPASGGGAWPSPLPSRSSGIWT 96
S AP A +A + P+ PV+P VPA + L AP G P+P+ ++
Sbjct: 119 SVAPSLATNASAAAFNPYLGPVSPSLVPAEI----LPTAPMLVTGNPGVPVPAAAAAAAQ 174
Query: 97 KQI------ICRYYIHGQCKEGEN-CRYSH 119
K + +CR Y G C GEN CR++H
Sbjct: 175 KLMRTDRLEVCREYQRGNCNRGENDCRFAH 204
>gi|41281591 muscleblind-like 1 isoform a [Homo sapiens]
Length = 382
Score = 37.0 bits (84), Expect = 0.042
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 41 SAAPDSALPHAARGWAPF--PVAP--VPAHLRRGGLRPAPASGGGAWPSPLPSRSSGIWT 96
S AP A +A + P+ PV+P VPA + L AP G P+P+ ++
Sbjct: 119 SVAPSLATNASAAAFNPYLGPVSPSLVPAEI----LPTAPMLVTGNPGVPVPAAAAAAAQ 174
Query: 97 KQI------ICRYYIHGQCKEGEN-CRYSH 119
K + +CR Y G C GEN CR++H
Sbjct: 175 KLMRTDRLEVCREYQRGNCNRGENDCRFAH 204
>gi|62548864 Rho guanine nucleotide exchange factor 10 [Homo
sapiens]
Length = 1344
Score = 37.0 bits (84), Expect = 0.042
Identities = 46/185 (24%), Positives = 66/185 (35%), Gaps = 20/185 (10%)
Query: 2 EEPAAPSEAHEAAGAQAGAEAAREGVSGPDLPVCEPSGESAAPDSALPHAARGWAPF--- 58
+ P+AP A +G PV EP+ + P P++ PF
Sbjct: 45 QAPSAPETGGAGASEAPAPTGGEDGAGAETTPVAEPT-KLVLPMKVNPYSVIDITPFQED 103
Query: 59 -PVAPVPA--------HLRRGGLRPAPASGGGAWPSPLPSRSSGIWTKQIICRYYI-HGQ 108
P PVP+ H+ G L P P G A PS LP + IIC + +
Sbjct: 104 QPPTPVPSAEEENVGLHVPCGYLVPVPC--GYAVPSNLPLLLPAYSSPVIICATSLDEEE 161
Query: 109 CKEGENCRYSHDLSGRKMATE----GGVSPPGASAGGGPSTAAHIEPPTQEVAEAPPAAS 164
E R + LS + T G A P+ A +E P + + + P +
Sbjct: 162 TPEVTEDRQPNSLSSEEPPTSEDQVGREDSALARWAADPANTAWMENPEEAIYDDVPREN 221
Query: 165 SLSLP 169
S S P
Sbjct: 222 SDSEP 226
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 36.6 bits (83), Expect = 0.055
Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 13/91 (14%)
Query: 101 CRYYIHGQCKEGENCRYSH----DLSGRKMATEGGVSPPGASAGGGPSTAAHIE----PP 152
CR+++ G C G NCR+ H D + T+ PP + GP P
Sbjct: 224 CRFFMKGNCTWGMNCRFIHPGVNDKGNYSLITKADPFPPNGAPPLGPHPLMPANPWGGPV 283
Query: 153 TQEVAEAPPAASSLSLPVIGSAAERGFFEAE 183
E+ PP P SA ERG A+
Sbjct: 284 VDEILPPPPPE-----PPTESAWERGLRHAK 309
Score = 30.0 bits (66), Expect = 5.2
Identities = 51/225 (22%), Positives = 75/225 (33%), Gaps = 30/225 (13%)
Query: 4 PAAPSEAHEAAGAQAGAEAAREGVSGPDLPVCEPSGESAAPDSALPHAARGWAPFPVAPV 63
P+ H + G A G +G E S + AP A P A + AP P
Sbjct: 608 PSPTPSPHRPSIRTKGEPAPPPGKAG------EKSVKKPAPPPAPPQATKTTAPVPEPTK 661
Query: 64 PAHLRRGGLRPAPASGGGAWPSPLPSRSSGIWTKQIICRYYIHGQCKEGENCRYSHDLSG 123
P R + PA P SG + G G + R S LS
Sbjct: 662 PGDPREARRKERPAR-----TPPRRRTLSGSGSGS--------GSSYSGSSSR-SRSLSV 707
Query: 124 RKMATEGGVSPPGASAGGGPS--TAAHIEPPTQEVAEAPPAASSLSLPVIGSAAERGFFE 181
+++ + +SA S A + P + PA + S E G E
Sbjct: 708 SSVSSVSSATSSSSSAHSVDSEDMYADLASPVSSASSRSPAPAQTRKEKGKSKKEDGVKE 767
Query: 182 AER--------DNADRGAAGGAGVESWADAIEFVPGQPYRGRWVA 218
+R + + AGG + + + PGQP +G +VA
Sbjct: 768 EKRKRDSSTQPPKSAKPPAGGKSSQQPSTPQQAPPGQPQQGTFVA 812
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 36.2 bits (82), Expect = 0.072
Identities = 50/181 (27%), Positives = 60/181 (33%), Gaps = 27/181 (14%)
Query: 4 PAAPSEAHEAAGAQAGAEAAREGVSGPDLPVCEP-----SGESAAPDSALPHAARGWAPF 58
P+A A AG +A +S D P+ P AA S P ARG
Sbjct: 895 PSAGVAATTIAGFGHFHKALGGSLSSSDSPLLTPLQPGARSPQAAQPSPAPPGARGGLGL 954
Query: 59 P--VAPVPAHLRRGGLRPAPASGGGAWPSPLPSRSSGIWTKQIICRYYIHGQCKEGENCR 116
P P P R +P+S G P S G+ T G E
Sbjct: 955 PEHFLPPPPSSR------SPSSSPGQLGQPPGELSLGLAT----------GPLSTPETPP 998
Query: 117 YSHDLSGRKMATEGGVSPPGASAGGGPSTAAHIEPPTQEVAEAPPAAS----SLSLPVIG 172
+ GG SP G + GG S H P + APP AS SL LP
Sbjct: 999 RQPEPPSLVAGASGGASPVGFTPRGGLSPPGHSPGPPRTFPSAPPRASGSHGSLLLPPAS 1058
Query: 173 S 173
S
Sbjct: 1059 S 1059
>gi|117676384 splicing factor, arginine/serine-rich 2, interacting
protein [Homo sapiens]
Length = 1463
Score = 36.2 bits (82), Expect = 0.072
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 15/88 (17%)
Query: 311 CGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVKSCPQCRVTSEL 370
C IC+ + EK G +CNH FC+ CI +W + SCP R +
Sbjct: 41 CPICLNCLLEK------EVGFPESCNHVFCMTCILKWAET-------LASCPIDRKPFQA 87
Query: 371 VIPSEFWVEEEEEKQKLIQQYKEAMSNK 398
V +F E K ++ +Q +E K
Sbjct: 88 VF--KFSALEGYVKVQVKKQLRETKDKK 113
>gi|188497705 BRCA1 associated protein [Homo sapiens]
Length = 592
Score = 36.2 bits (82), Expect = 0.072
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 16/56 (28%)
Query: 311 CGICMEVVYEKANPNDRRFGILSN-CNHSFCIRCIRRWRSARQFENRIVKSCPQCR 365
C +C+E + E N GIL+ CNHSF +C++RW +CP CR
Sbjct: 264 CTVCLERMDESVN------GILTTLCNHSFHSQCLQRWDDT---------TCPVCR 304
>gi|12232413 poly ADP-ribose polymerase 12 [Homo sapiens]
Length = 701
Score = 36.2 bits (82), Expect = 0.072
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 100 ICRYYIHGQCKEGENCRYSHDLS 122
IC+Y++ G+CK G +C+ SHD S
Sbjct: 180 ICQYFLQGECKFGTSCKRSHDFS 202
Score = 32.0 bits (71), Expect = 1.4
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 93 GIWTKQIICRYYIHGQCK---EGENCRYSHDLS 122
G+ + +CR+ ++G CK G+NCR SH L+
Sbjct: 87 GLCAQLHLCRFMVYGACKFLRAGKNCRNSHSLT 119
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 36.2 bits (82), Expect = 0.072
Identities = 39/148 (26%), Positives = 54/148 (36%), Gaps = 45/148 (30%)
Query: 3 EPAAPSEAHEAAGAQAGAEAAREGVSGPDLPV---CEPSGESAAPDSALPHAARGWAPFP 59
EP+ S E A ++A EA EG G PV EP A D+ P P P
Sbjct: 96 EPSPASSPSERAESEAAEEAGAEGAEGEARPVEKEAEPMDAEPAGDTRAPR------PPP 149
Query: 60 VAPVPAHLRRGGLRPAPASGGGAWPSPLPSRSSGIWTKQIICRYYIHGQCKEGENCRYSH 119
AP P P PA G PS + + + TK + ++
Sbjct: 150 AAPAP---------PTPAYGA---PSTNVTLEALLSTKVAVAQF---------------- 181
Query: 120 DLSGRKMATEGGVSPPGASAGGGPSTAA 147
++G + G+ AGGG + AA
Sbjct: 182 --------SQGARAAGGSGAGGGVAAAA 201
Score = 32.7 bits (73), Expect = 0.80
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 15/83 (18%)
Query: 5 AAPSEAHEAAGAQAGAEAAREG---VSGPDLPVCEPSGESAAPDSALPHAARGWAPFPVA 61
+A + A AG+ A AA EG +S P+ P G + A P AA P P A
Sbjct: 267 SAGAPAAAIAGSGPAAPAAFEGAQPLSRPESGASTPGGPAEPSAPAAPSAA----PAPAA 322
Query: 62 PVPAHLRRGGLRPAPASGGGAWP 84
P PA PAP S + P
Sbjct: 323 PAPA--------PAPQSAASSQP 337
>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens]
Length = 744
Score = 36.2 bits (82), Expect = 0.072
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 303 VQRGMDK---VCGICMEVVYEKANPNDRRFGILSNCNHSFCIRCIRRWRSARQFENRIVK 359
V R +DK +C IC+E NP + C H+FC RC++ + A + +
Sbjct: 12 VVRQIDKQFLICSICLE---RYKNPK------VLPCLHTFCERCLQNYIPA----HSLTL 58
Query: 360 SCPQCRVTSEL 370
SCP CR TS L
Sbjct: 59 SCPVCRQTSIL 69
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,141,857
Number of Sequences: 37866
Number of extensions: 1349397
Number of successful extensions: 7782
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 383
Number of HSP's that attempted gapping in prelim test: 7122
Number of HSP's gapped (non-prelim): 1009
length of query: 507
length of database: 18,247,518
effective HSP length: 107
effective length of query: 400
effective length of database: 14,195,856
effective search space: 5678342400
effective search space used: 5678342400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.