Guide to the Human Genome
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Name: YIPF3 Sequence: fasta or formatted (350aa) NCBI GI: 49472828
Description:

natural killer cell-specific antigen KLIP1

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         38           4
 C cysteine            1.1          4           1
 D aspartate           4.0         14           2
 E glutamate           5.4         19           3
 F phenylalanine       4.9         17           1
 G glycine             9.4         33           3
 H histidine           2.6          9           1
 I isoleucine          5.7         20           2
 K lysine              2.3          8           1
 L leucine            13.4         47           3
 M methionine          4.6         16           1
 N asparagine          2.6          9           1
 P proline             4.3         15           2
 Q glutamine           4.0         14           1
 R arginine            4.6         16           1
 S serine              4.3         15           2
 T threonine           5.7         20           2
 V valine              6.0         21           2
 W tryptophan          1.1          4           1
 Y tyrosine            3.1         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   natural killer cell-specific antigen KLIP1 
YIPF1                 0.021   Yip1 domain family, member 1 
YIPF2                 0.016   Yip1 domain family, member 2 
HAUS3                 0.012   HAUS augmin-like complex, subunit 3 
CLDN2                 0.010   claudin 2 
YIPF4                 0.010   Yip1 domain family, member 4 
DAPK3                 0.010   death-associated protein kinase 3 
NRD1                  0.009   nardilysin isoform b 
NRD1                  0.009   nardilysin isoform a 
PHRF1                 0.009   PHD and ring finger domains 1 
AEBP2                 0.009   AE binding protein 2 isoform b 
AEBP2                 0.009   AE binding protein 2 isoform a 
LOC123855             0.007   PREDICTED: similar to hCG2042536 
LOC123855             0.007   PREDICTED: similar to hCG2042536 
LOC100293014          0.007   PREDICTED: hypothetical protein 
OR10J1                0.007   olfactory receptor, family 10, subfamily J, member 1 ...
NOL11                 0.007   nucleolar protein 11 
OR2T6                 0.007   olfactory receptor, family 2, subfamily T, member 6 ...
KIAA1731              0.007   hypothetical protein LOC85459 
CASZ1                 0.006   castor homolog 1, zinc finger isoform a 
CASZ1                 0.006   castor homolog 1, zinc finger isoform b 
MAK16                 0.006   MAK16 homolog 
OR51E2                0.006   olfactory receptor, family 51, subfamily E, member 2...
BIN2                  0.006   bridging integrator 2 
KIAA1529              0.006   hypothetical protein LOC57653 
SLC15A1               0.006   solute carrier family 15 (oligopeptide transporter), ...
MYST3                 0.006   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.006   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.006   MYST histone acetyltransferase (monocytic leukemia)...
HIVEP2                0.006   human immunodeficiency virus type I enhancer bindin...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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