Guide to the Human Genome
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Name: YIPF1 Sequence: fasta or formatted (306aa) NCBI GI: 10092643
Description:

Yip1 domain family, member 1

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         28           3
 C cysteine            1.0          3           1
 D aspartate           5.2         16           2
 E glutamate           4.6         14           2
 F phenylalanine       5.9         18           2
 G glycine             5.6         17           1
 H histidine           1.6          5           1
 I isoleucine          7.5         23           2
 K lysine              3.6         11           2
 L leucine            10.5         32           2
 M methionine          2.3          7           1
 N asparagine          3.9         12           1
 P proline             5.9         18           1
 Q glutamine           2.3          7           1
 R arginine            3.6         11           2
 S serine              6.5         20           2
 T threonine           6.9         21           3
 V valine              6.9         21           1
 W tryptophan          2.6          8           1
 Y tyrosine            4.6         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Yip1 domain family, member 1 
YIPF2                 0.449   Yip1 domain family, member 2 
MOSC2                 0.027   MOCO sulphurase C-terminal domain containing 2 [Homo...
SLC22A4               0.025   solute carrier family 22 member 4 
YIPF3                 0.023   natural killer cell-specific antigen KLIP1 
YIPF4                 0.023   Yip1 domain family, member 4 
OR8K1                 0.018   olfactory receptor, family 8, subfamily K, member 1 ...
OR5B2                 0.018   olfactory receptor, family 5, subfamily B, member 2 ...
OR6C65                0.017   olfactory receptor, family 6, subfamily C, member 65...
OR5B17                0.013   olfactory receptor, family 5, subfamily B, member 17...
ND4                   0.012   NADH dehydrogenase subunit 4 
ND4                   0.012   NADH dehydrogenase subunit 4 
OR6C74                0.012   olfactory receptor, family 6, subfamily C, member 74...
ABLIM1                0.012   actin-binding LIM protein 1 isoform s 
ABLIM1                0.012   actin-binding LIM protein 1 isoform c 
ABLIM1                0.012   actin-binding LIM protein 1 isoform b 
ABLIM1                0.012   actin-binding LIM protein 1 isoform a 
OR8I2                 0.012   olfactory receptor, family 8, subfamily I, member 2 ...
OR5P2                 0.012   olfactory receptor, family 5, subfamily P, member 2 ...
ANKAR                 0.010   ankyrin and armadillo repeat containing 
OR1Q1                 0.010   olfactory receptor, family 1, subfamily Q, member 1 ...
HCRTR1                0.008   orexin receptor 1 
MRC1                  0.008   mannose receptor C type 1 precursor 
MRC1L1                0.008   mannose receptor, C type 1-like 1 
EMR1                  0.008   egf-like module containing, mucin-like, hormone rece...
EBPL                  0.008   emopamil binding related protein, delta8-delta7 ster...
FGD6                  0.008   FYVE, RhoGEF and PH domain containing 6 
NPY1R                 0.007   neuropeptide Y receptor Y1 
ABCB4                 0.007   ATP-binding cassette, subfamily B, member 4 isoform C...
ZNF608                0.007   zinc finger protein 608 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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