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Search of human proteins with 48717269
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|48717269 transmembrane protein 16G isoform NGEP short [Homo
sapiens]
(179 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|48717269 transmembrane protein 16G isoform NGEP short [Homo s... 375 e-104
gi|145207958 transmembrane protein 16G isoform NGEP long [Homo s... 318 1e-87
gi|239752866 PREDICTED: similar to hCG1997308 [Homo sapiens] 32 0.38
gi|239747418 PREDICTED: hypothetical protein XP_002346694 [Homo ... 32 0.38
gi|239741243 PREDICTED: hypothetical protein XP_002342142 [Homo ... 32 0.38
gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo ... 31 0.50
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 31 0.65
gi|239754714 PREDICTED: hypothetical protein [Homo sapiens] 30 0.85
gi|239749263 PREDICTED: hypothetical protein [Homo sapiens] 30 0.85
gi|239743359 PREDICTED: hypothetical protein XP_002342827 [Homo ... 30 0.85
gi|239509052 PREDICTED: hypothetical protein [Homo sapiens] 30 0.85
gi|162809334 pregnancy-zone protein [Homo sapiens] 30 1.1
gi|47078281 hypothetical protein LOC9679 [Homo sapiens] 30 1.1
gi|5032243 makorin ring finger protein 3 [Homo sapiens] 30 1.4
gi|219842343 glutamate receptor, metabotropic 5 isoform a precur... 29 2.5
gi|4504143 glutamate receptor, metabotropic 5 isoform b precurso... 29 2.5
gi|169163942 PREDICTED: hypothetical protein [Homo sapiens] 29 2.5
gi|169164134 PREDICTED: hypothetical protein [Homo sapiens] 29 2.5
gi|169163165 PREDICTED: hypothetical protein [Homo sapiens] 29 2.5
gi|31652259 melanoma ubiquitous mutated protein [Homo sapiens] 28 3.2
gi|14149716 protein phosphatase 1, regulatory subunit 12C [Homo ... 28 3.2
gi|150378549 tangerin [Homo sapiens] 28 3.2
gi|7661860 leucine rich repeat containing 14 [Homo sapiens] 28 3.2
gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo ... 28 4.2
gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo ... 28 4.2
gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo ... 28 4.2
gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo sa... 28 4.2
gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo s... 28 4.2
gi|50428940 mediator complex subunit 25 [Homo sapiens] 28 4.2
gi|223942018 jumonji domain containing 5 isoform 1 [Homo sapiens] 28 5.5
>gi|48717269 transmembrane protein 16G isoform NGEP short [Homo
sapiens]
Length = 179
Score = 375 bits (962), Expect = e-104
Identities = 179/179 (100%), Positives = 179/179 (100%)
Query: 1 MRMAATAWAGLQGPPLPTLCPAVRTGLYCRDQAHAERWAMTSETSSGSHCARSRMLRRRA 60
MRMAATAWAGLQGPPLPTLCPAVRTGLYCRDQAHAERWAMTSETSSGSHCARSRMLRRRA
Sbjct: 1 MRMAATAWAGLQGPPLPTLCPAVRTGLYCRDQAHAERWAMTSETSSGSHCARSRMLRRRA 60
Query: 61 QEEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAACRAGSPAKPRIDFVLVWEEDLK 120
QEEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAACRAGSPAKPRIDFVLVWEEDLK
Sbjct: 61 QEEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAACRAGSPAKPRIDFVLVWEEDLK 120
Query: 121 LDRQQDSAARDRTDMHRTWRETFLDNLRAAGLCVDQVRGGCHGQGPRPCIHSVTHDLAA 179
LDRQQDSAARDRTDMHRTWRETFLDNLRAAGLCVDQVRGGCHGQGPRPCIHSVTHDLAA
Sbjct: 121 LDRQQDSAARDRTDMHRTWRETFLDNLRAAGLCVDQVRGGCHGQGPRPCIHSVTHDLAA 179
>gi|145207958 transmembrane protein 16G isoform NGEP long [Homo
sapiens]
Length = 933
Score = 318 bits (816), Expect = 1e-87
Identities = 156/157 (99%), Positives = 156/157 (99%), Gaps = 1/157 (0%)
Query: 1 MRMAATAWAGLQGPPLPTLCPAVRTGLYCRDQAHAERWAMTSETSSGSHCARSRMLRRRA 60
MRMAATAWAGLQGPPLPTLCPAVRTGLYCRDQAHAERWAMTSETSSGSHCARSRMLRRRA
Sbjct: 1 MRMAATAWAGLQGPPLPTLCPAVRTGLYCRDQAHAERWAMTSETSSGSHCARSRMLRRRA 60
Query: 61 QEEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAACRAGSPAKPRI-DFVLVWEEDL 119
QEEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAACRAGSPAKPRI DFVLVWEEDL
Sbjct: 61 QEEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAACRAGSPAKPRIADFVLVWEEDL 120
Query: 120 KLDRQQDSAARDRTDMHRTWRETFLDNLRAAGLCVDQ 156
KLDRQQDSAARDRTDMHRTWRETFLDNLRAAGLCVDQ
Sbjct: 121 KLDRQQDSAARDRTDMHRTWRETFLDNLRAAGLCVDQ 157
>gi|239752866 PREDICTED: similar to hCG1997308 [Homo sapiens]
Length = 173
Score = 31.6 bits (70), Expect = 0.38
Identities = 31/107 (28%), Positives = 36/107 (33%), Gaps = 10/107 (9%)
Query: 9 AGLQGPPLPTL-------CPAVRTGLYCRDQAHAERWAMTSETSSGSHCARSRMLRRRAQ 61
A L PP+PTL CP + R A + S G R R R
Sbjct: 62 ASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGA--TGKSMGHSSQRPVSSRARCW 119
Query: 62 EEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAACRAGS-PAKP 107
L + E +K A EPG AAA A S PA P
Sbjct: 120 TRSGWRLKESGEEEEDKSSEAAQRCRAQEPGASSAAALLASSVPALP 166
>gi|239747418 PREDICTED: hypothetical protein XP_002346694 [Homo
sapiens]
Length = 173
Score = 31.6 bits (70), Expect = 0.38
Identities = 31/107 (28%), Positives = 36/107 (33%), Gaps = 10/107 (9%)
Query: 9 AGLQGPPLPTL-------CPAVRTGLYCRDQAHAERWAMTSETSSGSHCARSRMLRRRAQ 61
A L PP+PTL CP + R A + S G R R R
Sbjct: 62 ASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGA--TGKSMGHSSQRPVSSRARCW 119
Query: 62 EEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAACRAGS-PAKP 107
L + E +K A EPG AAA A S PA P
Sbjct: 120 TRSGWRLKESGEEEEDKSSEAAQRCRAQEPGASSAAALLASSVPALP 166
>gi|239741243 PREDICTED: hypothetical protein XP_002342142 [Homo
sapiens]
Length = 173
Score = 31.6 bits (70), Expect = 0.38
Identities = 31/107 (28%), Positives = 36/107 (33%), Gaps = 10/107 (9%)
Query: 9 AGLQGPPLPTL-------CPAVRTGLYCRDQAHAERWAMTSETSSGSHCARSRMLRRRAQ 61
A L PP+PTL CP + R A + S G R R R
Sbjct: 62 ASLTPPPVPTLQVAPEAPCPQSHLSFTSEGSSGTSRGA--TGKSMGHSSQRPVSSRARCW 119
Query: 62 EEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAACRAGS-PAKP 107
L + E +K A EPG AAA A S PA P
Sbjct: 120 TRSGWRLKESGEEEEDKSSEAAQRCRAQEPGASSAAALLASSVPALP 166
>gi|239741603 PREDICTED: hypothetical protein XP_002342247 [Homo
sapiens]
Length = 351
Score = 31.2 bits (69), Expect = 0.50
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 37 RWAMTSETSSGSHCARSRMLRRRAQEEDSTVLIDVSPPEAEKRGSYGSTAHAS-----EP 91
R A + SG C R +R Q S+ D+ P K G +G +AH S P
Sbjct: 263 RRAREPQPGSGRRCRRDTAVRWPRQAPYSSRGHDLERPGRCKTGLWGHSAHTSHRLRISP 322
Query: 92 GGQQAAACRA 101
+ A +CRA
Sbjct: 323 KSESAPSCRA 332
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 30.8 bits (68), Expect = 0.65
Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Query: 33 AHAERWAMTSETSSGSHCARSRMLRRRAQEEDSTVLIDVSPPEAEKRGSYGSTAHASEPG 92
A A A + G +RS + ++ + SP A G S ++ G
Sbjct: 270 AAAAAAAQMHAKNGGGSSSRSSPVSGPPAVCETLAVASASPMAAAAEGPQQSAEGSASGG 329
Query: 93 GQQAAACRAGSPAKPRIDFVLVWEEDLKLDRQQDSAARDRTDMHRT----WRETFLD 145
G QAAA + P ++ +E+++ R+++ ++ D RT R+TF +
Sbjct: 330 GMQAAAPPSSQPHPQQLQEQEEMQEEMEKLREENETLKNEIDELRTEMDEMRDTFFE 386
>gi|239754714 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 30.4 bits (67), Expect = 0.85
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 51 ARSRMLRRRAQEEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAACRAGSPA 105
ARS + RAQ D T + + SP RGS+ S S P +AA SP+
Sbjct: 7 ARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSS---PSNPARGNSAASSFSSPS 58
>gi|239749263 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 30.4 bits (67), Expect = 0.85
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 51 ARSRMLRRRAQEEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAACRAGSPA 105
ARS + RAQ D T + + SP RGS+ S S P +AA SP+
Sbjct: 7 ARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSS---PSNPARGNSAASSFSSPS 58
>gi|239743359 PREDICTED: hypothetical protein XP_002342827 [Homo
sapiens]
Length = 194
Score = 30.4 bits (67), Expect = 0.85
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 51 ARSRMLRRRAQEEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAACRAGSPA 105
ARS + RAQ D T + + SP RGS+ S S P +AA SP+
Sbjct: 7 ARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSS---PSNPARGNSAASSFSSPS 58
>gi|239509052 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 30.4 bits (67), Expect = 0.85
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 51 ARSRMLRRRAQEEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAACRAGSPA 105
ARS + RAQ D T + + SP RGS+ S S P +AA SP+
Sbjct: 7 ARSTAMNARAQYRDFTYMGEHSPVSVTARGSFSS---PSNPARGNSAASSFSSPS 58
>gi|162809334 pregnancy-zone protein [Homo sapiens]
Length = 1482
Score = 30.0 bits (66), Expect = 1.1
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 15 PLPTLCPAVRTGLYCRDQAHAERWAMTSETSSGSHCARSRML 56
PLP P VR L+C + A W + E + GSH +L
Sbjct: 1119 PLPVTNPIVRNALFCLESA----WNVAKEGTHGSHVYTKALL 1156
>gi|47078281 hypothetical protein LOC9679 [Homo sapiens]
Length = 422
Score = 30.0 bits (66), Expect = 1.1
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 88 ASEPGGQQAAACRAGSPAKPRIDFVLVWEEDLKLDRQQDSAARD-----RTDMHRTWRE 141
AS PGG+ A P P D L +EDL + + DS A D R + WR+
Sbjct: 342 ASGPGGRTPAGTPVPEPLPPSFDDHLACQEDLSCE-ESDSCALDEDCGRRAEPAAAWRD 399
>gi|5032243 makorin ring finger protein 3 [Homo sapiens]
Length = 507
Score = 29.6 bits (65), Expect = 1.4
Identities = 28/104 (26%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 1 MRMAATAWAGLQGPPLPTLCPAVRTG-LYCRDQAHAERWAMTSETSSGSHCARSRMLRRR 59
+R A + G PLP+ + T + CR H + G +C S L R
Sbjct: 72 LRPAPASGGGAWPSPLPSRSSGIWTKQIICRYYIHGQ-------CKEGENCRYSHDLSGR 124
Query: 60 AQEEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAACRAGS 103
+ VSPP A G + AH P + A A A S
Sbjct: 125 KMATEG----GVSPPGASAGGGPSTAAHIEPPTQEVAEAPPAAS 164
>gi|219842343 glutamate receptor, metabotropic 5 isoform a precursor
[Homo sapiens]
Length = 1212
Score = 28.9 bits (63), Expect = 2.5
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 38 WAMTSETSSGSHC-ARSRMLRRRAQEEDSTVLIDVSPPEAEKR------GSYGSTAHASE 90
WA ++S G H R + + + + T +I P E R G+ GS
Sbjct: 917 WAQNEKSSRGQHLWQRLSIHINKKENPNQTAVIKPFPKSTESRGLGAGAGAGGSAGGVGA 976
Query: 91 PGGQQAAACRAGSPAKP 107
GG A G P P
Sbjct: 977 TGGAGCAGAGPGGPESP 993
>gi|4504143 glutamate receptor, metabotropic 5 isoform b precursor
[Homo sapiens]
Length = 1180
Score = 28.9 bits (63), Expect = 2.5
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 7/77 (9%)
Query: 38 WAMTSETSSGSHC-ARSRMLRRRAQEEDSTVLIDVSPPEAEKR------GSYGSTAHASE 90
WA ++S G H R + + + + T +I P E R G+ GS
Sbjct: 885 WAQNEKSSRGQHLWQRLSIHINKKENPNQTAVIKPFPKSTESRGLGAGAGAGGSAGGVGA 944
Query: 91 PGGQQAAACRAGSPAKP 107
GG A G P P
Sbjct: 945 TGGAGCAGAGPGGPESP 961
>gi|169163942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 28.9 bits (63), Expect = 2.5
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 53 SRMLRRRAQEEDSTVLIDVSPPEAEKRGSYGSTAHASEPGG--QQAAACRAGSPAKPRID 110
S RRR + S + S + R S G+ A EP G +Q +A A + A P
Sbjct: 13 SASARRRLRISSSLLHCSSSSSDTLDRSSTGAGGAADEPAGAEEQLSAAAAAAAAPPAAF 72
Query: 111 FVLVWEE 117
+++W++
Sbjct: 73 DMVLWQK 79
>gi|169164134 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 28.9 bits (63), Expect = 2.5
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 53 SRMLRRRAQEEDSTVLIDVSPPEAEKRGSYGSTAHASEP--GGQQAAACRAGSPAKPRID 110
S RRR + S + S + R S G+ A EP G+Q +A A + A P
Sbjct: 13 SASARRRLRISSSLLHCSSSSSDTLDRSSTGAGGAADEPAGAGEQLSAAAAAAAAPPAAF 72
Query: 111 FVLVWEE 117
+++W++
Sbjct: 73 DMVLWQK 79
>gi|169163165 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 28.9 bits (63), Expect = 2.5
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 53 SRMLRRRAQEEDSTVLIDVSPPEAEKRGSYGSTAHASEP--GGQQAAACRAGSPAKPRID 110
S RRR + S + S + R S G+ A EP G+Q +A A + A P
Sbjct: 13 SASARRRLRISSSLLHCSSSSSDTLDRSSTGAGGAADEPAGAGEQLSAAAAAAAAPPAAF 72
Query: 111 FVLVWEE 117
+++W++
Sbjct: 73 DMVLWQK 79
>gi|31652259 melanoma ubiquitous mutated protein [Homo sapiens]
Length = 711
Score = 28.5 bits (62), Expect = 3.2
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 9 AGLQGPPLPTLCPAVRTGLYCRDQAHAERWAMTSETSSGSHCARSRMLRRRAQEEDSTVL 68
A L PP A R L C D E+ +SE S GS+ RS + EE VL
Sbjct: 344 ARLGPPPSHASADATRC-LPCPDSQKLEKECQSSEESMGSNSMRSILEEDEEDEEPPRVL 402
Query: 69 IDVSPPEAE 77
+ P E
Sbjct: 403 LYHEPRSFE 411
>gi|14149716 protein phosphatase 1, regulatory subunit 12C [Homo
sapiens]
Length = 782
Score = 28.5 bits (62), Expect = 3.2
Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
Query: 30 RDQAHAERWAMTSETSSGSHCARSRMLRRRAQEEDSTVLIDVSPPEAEKRGSYGSTAHAS 89
RD+ + + + E S ARSR++R+ + L D+ EAEK + G +
Sbjct: 527 RDRRRSYQMPVRDEESESQRKARSRLMRQSRRSTQGVTLTDLK--EAEK--AAGKAPESE 582
Query: 90 EPGGQQAAACRAGSPAKPRIDFVLVWEEDLKLDRQQDSAARDRTDMHRTWR 140
+P + R P D E AAR+ + + WR
Sbjct: 583 KPAQSLDPSRRPRVPGVENSDSPAQRAEAPDGQGPGPQAAREHRKVGKEWR 633
>gi|150378549 tangerin [Homo sapiens]
Length = 1523
Score = 28.5 bits (62), Expect = 3.2
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 10/89 (11%)
Query: 32 QAHAERWAMTSETSS--GSHCARSRMLRR--------RAQEEDSTVLIDVSPPEAEKRGS 81
+A A W M+ S G+ A ++L +AQE ++ VL + EAE +
Sbjct: 936 EAEAGVWGMSEGKSGAWGAQEAEMKVLESPENKSGTFKAQEAEAGVLGNEKGKEAEGSLT 995
Query: 82 YGSTAHASEPGGQQAAACRAGSPAKPRID 110
S A G A A RA SP K D
Sbjct: 996 EASLPEAQVASGAGAGAPRASSPEKAEED 1024
>gi|7661860 leucine rich repeat containing 14 [Homo sapiens]
Length = 493
Score = 28.5 bits (62), Expect = 3.2
Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 27/130 (20%)
Query: 48 SHCARSRMLRRRAQEEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAACRAGSPAKP 107
+HC+R+ + R + E V++ ++ + H SEPG CR A
Sbjct: 69 AHCSRALLQERPSTESMQAVILGLT-----------ARLHTSEPGASTQPLCR--KHALR 115
Query: 108 RIDFVLVWEEDLKLDRQQDSAARDRTDMHRTWRETFLDNLRAAGLCVDQVRGGCHGQGPR 167
+D + ++ + +QD D A C+ Q +GG GP
Sbjct: 116 VLDMTGLLDDGV----EQDPGTMSMWDC----------TAAVARTCIAQQQGGAAEPGPA 161
Query: 168 PCIHSVTHDL 177
P V DL
Sbjct: 162 PIPVEVRVDL 171
>gi|169213924 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 28.1 bits (61), Expect = 4.2
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 39 AMTSETSSGSHCARSRMLRRRAQEEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAA 98
A+ +E +G C R+ +L R +E++ + S PE +TA +P + AA
Sbjct: 455 ALLAEIQNG--CKRNLVLAREREEKEQPPQLSASMPE--------TTATEPQPDDEPAAG 504
Query: 99 CRAGSPA 105
+ G+P+
Sbjct: 505 VQNGAPS 511
>gi|169214345 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 28.1 bits (61), Expect = 4.2
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 39 AMTSETSSGSHCARSRMLRRRAQEEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAA 98
A+ +E +G C R+ +L R +E++ + S PE +TA +P + AA
Sbjct: 455 ALLAEIQNG--CKRNLVLAREREEKEQPPQLSASMPE--------TTATEPQPDDEPAAG 504
Query: 99 CRAGSPA 105
+ G+P+
Sbjct: 505 VQNGAPS 511
>gi|169213302 PREDICTED: leucine rich repeat containing 68 [Homo
sapiens]
Length = 625
Score = 28.1 bits (61), Expect = 4.2
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 39 AMTSETSSGSHCARSRMLRRRAQEEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAA 98
A+ +E +G C R+ +L R +E++ + S PE +TA +P + AA
Sbjct: 455 ALLAEIQNG--CKRNLVLAREREEKEQPPQLSASMPE--------TTATEPQPDDEPAAG 504
Query: 99 CRAGSPA 105
+ G+P+
Sbjct: 505 VQNGAPS 511
>gi|50897852 coiled-coil domain containing 88A isoform 2 [Homo
sapiens]
Length = 1843
Score = 28.1 bits (61), Expect = 4.2
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 39 AMTSETSSGSHCARSRMLRRRAQEEDSTVLIDVSPPEAEKRGSYGSTAHASEP 91
A+ T + S RS+ L +D+T D+SP S GS HAS P
Sbjct: 1508 AINFSTVNSSAGFRSKQL---VNNKDTTSFEDISPQGVSDDSSTGSRVHASRP 1557
>gi|208022632 coiled-coil domain containing 88A isoform 1 [Homo
sapiens]
Length = 1870
Score = 28.1 bits (61), Expect = 4.2
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 39 AMTSETSSGSHCARSRMLRRRAQEEDSTVLIDVSPPEAEKRGSYGSTAHASEP 91
A+ T + S RS+ L +D+T D+SP S GS HAS P
Sbjct: 1535 AINFSTVNSSAGFRSKQL---VNNKDTTSFEDISPQGVSDDSSTGSRVHASRP 1584
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 28.1 bits (61), Expect = 4.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 61 QEEDSTVLIDVSPPEAEKRGSYGSTAHASEPGGQQAAACRAGSPAKP 107
Q S L+ + PP+ + +G+ G++ +P Q A G+P P
Sbjct: 575 QARPSQNLLQLRPPQPQPQGTVGASGATGQPQPQGTAQPPPGAPQGP 621
>gi|223942018 jumonji domain containing 5 isoform 1 [Homo sapiens]
Length = 454
Score = 27.7 bits (60), Expect = 5.5
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 76 AEKRGSYGSTAHASEPGGQQAAACRAGSPAKPRIDFVLVWE----------EDLKLD 122
+E G S H +EP G A PA+P +WE EDLKLD
Sbjct: 18 SEASGLKASAGHGTEPAGGGPMAGDTHCPAEPLAREGTLWEALRALLPHSKEDLKLD 74
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.130 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,214,752
Number of Sequences: 37866
Number of extensions: 365409
Number of successful extensions: 1357
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1334
Number of HSP's gapped (non-prelim): 59
length of query: 179
length of database: 18,247,518
effective HSP length: 96
effective length of query: 83
effective length of database: 14,612,382
effective search space: 1212827706
effective search space used: 1212827706
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.