Guide to the Human Genome
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Name: LOC100129434 Sequence: fasta or formatted (173aa) NCBI GI: 169163942
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {173aa} PREDICTED: hypothetical protein
alt prot {173aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.3         23           8
 C cysteine            3.5          6           1
 D aspartate           2.3          4           1
 E glutamate           4.6          8           2
 F phenylalanine       2.3          4           1
 G glycine             5.8         10           2
 H histidine           1.7          3           1
 I isoleucine          2.9          5           1
 K lysine              4.6          8           2
 L leucine            12.1         21           2
 M methionine          1.2          2           1
 N asparagine          1.2          2           1
 P proline             6.9         12           2
 Q glutamine           3.5          6           1
 R arginine            7.5         13           3
 S serine             13.3         23           5
 T threonine           6.4         11           2
 V valine              2.9          5           1
 W tryptophan          2.9          5           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100129434          0.994   PREDICTED: hypothetical protein 
LOC100129434          0.994   PREDICTED: hypothetical protein 
MSH3                  0.031   mutS homolog 3 
ZFP36L2               0.031   zinc finger protein 36, C3H type-like 2 
EOMES                 0.025   eomesodermin 
LOC100133142          0.022   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.022   PREDICTED: similar to zinc finger protein 208 [Homo...
TNRC18                0.022   trinucleotide repeat containing 18 
ANO7                  0.015   transmembrane protein 16G isoform NGEP long 
ZNRF2                 0.015   zinc finger/RING finger 2 
GJD4                  0.015   connexin40.1 
SRRM2                 0.015   splicing coactivator subunit SRm300 
IRX3                  0.015   iroquois homeobox 3 
TMEM151B              0.015   transmembrane protein 151B 
KNDC1                 0.015   kinase non-catalytic C-lobe domain (KIND) containin...
CCDC85A               0.015   coiled-coil domain containing 85A 
DGKH                  0.012   diacylglycerol kinase, eta isoform 1 
DGKH                  0.012   diacylglycerol kinase, eta isoform 2 
LOC646509             0.012   PREDICTED: hypothetical protein 
ZSWIM6                0.012   zinc finger, SWIM-type containing 6 
CACNA1I               0.012   calcium channel, voltage-dependent, T type, alpha 1I...
CACNA1I               0.012   calcium channel, voltage-dependent, T type, alpha 1I...
EN1                   0.012   engrailed homeobox 1 
HOXA13                0.012   homeobox A13 
SPEN                  0.012   spen homolog, transcriptional regulator 
GDF1                  0.012   growth differentiation factor 1 
ANO7                  0.012   transmembrane protein 16G isoform NGEP short 
RUSC2                 0.012   RUN and SH3 domain containing 2 
RUSC2                 0.012   RUN and SH3 domain containing 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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