Guide to the Human Genome
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Name: EHBP1L1 Sequence: fasta or formatted (1523aa) NCBI GI: 150378549
Description:

tangerin

Referenced in:

Additional Membrane Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.1        169           4
 C cysteine            0.9         14           1
 D aspartate           4.1         63           3
 E glutamate          12.1        184           5
 F phenylalanine       1.2         18           1
 G glycine            10.7        163           4
 H histidine           0.9         14           1
 I isoleucine          2.9         44           2
 K lysine              3.5         53           2
 L leucine             7.9        121           3
 M methionine          1.3         20           1
 N asparagine          1.5         23           2
 P proline             6.9        105           3
 Q glutamine           6.0         92           2
 R arginine            7.5        114           3
 S serine              7.6        116           3
 T threonine           5.3         80           2
 V valine              6.9        105           3
 W tryptophan          0.9         14           1
 Y tyrosine            0.7         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tangerin 
EHBP1                 0.088   EH domain binding protein 1 isoform 3 
EHBP1                 0.088   EH domain binding protein 1 isoform 3 
EHBP1                 0.088   EH domain binding protein 1 isoform 2 
EHBP1                 0.088   EH domain binding protein 1 isoform 1 
MICALL1               0.029   molecule interacting with Rab13 
SMTNL1                0.028   smoothelin-like 1 
MICALL2               0.026   MICAL-like 2 isoform 1 
MICAL3                0.026   microtubule associated monoxygenase, calponin and L...
MICAL3                0.026   microtubule associated monoxygenase, calponin and L...
MICAL3                0.026   microtubule associated monoxygenase, calponin and L...
SMTN                  0.025   smoothelin isoform b 
SMTN                  0.024   smoothelin isoform c 
SMTN                  0.023   smoothelin isoform a 
SMTNL2                0.022   smoothelin-like 2 isoform 2 
SMTNL2                0.022   smoothelin-like 2 isoform 1 
RP1L1                 0.022   retinitis pigmentosa 1-like 1 
CYTSB                 0.021   spectrin domain with coiled-coils 1 NSP5a3b 
CYTSB                 0.021   spectrin domain with coiled-coils 1 NSP5b3b 
SPTBN4                0.021   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
MICAL2                0.020   microtubule associated monoxygenase, calponin and LIM...
CYTSA                 0.020   cytospin A 
CYTSA                 0.020   cytospin A 
SPTBN2                0.020   spectrin, beta, non-erythrocytic 2 
MICALCL               0.020   MICAL C-terminal like 
ACTN3                 0.020   actinin, alpha 3 
SYNE2                 0.019   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.019   spectrin repeat containing, nuclear envelope 2 isof...
SPTBN5                0.019   spectrin, beta, non-erythrocytic 5 
SPTB                  0.019   spectrin beta isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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