Guide to the Human Genome
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Name: DGCR2 Sequence: fasta or formatted (550aa) NCBI GI: 4826694
Description:

integral membrane protein DGCR2

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         38           2
 C cysteine            4.4         24           2
 D aspartate           7.3         40           3
 E glutamate           6.2         34           1
 F phenylalanine       5.3         29           1
 G glycine             8.4         46           3
 H histidine           3.6         20           2
 I isoleucine          2.2         12           1
 K lysine              2.5         14           1
 L leucine             9.1         50           3
 M methionine          1.3          7           1
 N asparagine          2.4         13           1
 P proline             8.7         48           4
 Q glutamine           4.0         22           2
 R arginine            6.0         33           3
 S serine              8.2         45           3
 T threonine           4.0         22           1
 V valine              5.3         29           2
 W tryptophan          1.6          9           1
 Y tyrosine            2.7         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   integral membrane protein DGCR2 
LRP5                  0.035   low density lipoprotein receptor-related protein 5 ...
LRP6                  0.033   low density lipoprotein receptor-related protein 6 ...
LY75                  0.027   lymphocyte antigen 75 
LRP8                  0.023   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.023   low density lipoprotein receptor-related protein 8 i...
LDLRAD3               0.023   low density lipoprotein receptor class A domain cont...
LDLR                  0.022   low density lipoprotein receptor precursor 
ST14                  0.022   matriptase 
ATRNL1                0.022   attractin-like 1 
LRP1                  0.020   low density lipoprotein-related protein 1 
CORIN                 0.020   corin 
VLDLR                 0.020   very low density lipoprotein receptor isoform b [Hom...
VLDLR                 0.020   very low density lipoprotein receptor isoform a [Hom...
LRP4                  0.020   low density lipoprotein receptor-related protein 4 ...
LRP2                  0.020   low density lipoprotein-related protein 2 
SSPO                  0.019   SCO-spondin 
HSPG2                 0.019   heparan sulfate proteoglycan 2 
LRP8                  0.017   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.017   low density lipoprotein receptor-related protein 8 i...
C10orf112             0.017   PREDICTED: chromosome 10 open reading frame 112 [Ho...
C10orf112             0.017   PREDICTED: chromosome 10 open reading frame 112 [Ho...
C10orf112             0.017   PREDICTED: chromosome 10 open reading frame 112 [Ho...
LRP1B                 0.017   low density lipoprotein-related protein 1B precursor...
LRP3                  0.017   low density lipoprotein receptor-related protein 3 ...
SORL1                 0.017   sortilin-related receptor containing LDLR class A rep...
CD320                 0.017   8D6 antigen 
PLA2R1                0.016   phospholipase A2 receptor 1 isoform 2 precursor [Hom...
PLA2R1                0.016   phospholipase A2 receptor 1 isoform 1 precursor [Hom...
NCAN                  0.016   chondroitin sulfate proteoglycan 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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