Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SOCS3 Sequence: fasta or formatted (225aa) NCBI GI: 45439352
Description:

suppressor of cytokine signaling 3

Referenced in:

Non-Receptor Tyrosine Kinase Pathways

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         12           2
 C cysteine            1.3          3           1
 D aspartate           3.6          8           1
 E glutamate           4.9         11           1
 F phenylalanine       4.4         10           2
 G glycine             6.2         14           2
 H histidine           2.7          6           2
 I isoleucine          2.2          5           1
 K lysine              4.4         10           1
 L leucine            10.7         24           3
 M methionine          1.3          3           1
 N asparagine          2.2          5           1
 P proline            11.1         25           3
 Q glutamine           5.3         12           1
 R arginine            5.8         13           2
 S serine             12.4         28           2
 T threonine           5.8         13           1
 V valine              6.2         14           2
 W tryptophan          0.4          1           1
 Y tyrosine            3.6          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   suppressor of cytokine signaling 3 
CISH                  0.184   cytokine-inducible SH2-containing protein isoform 1...
CISH                  0.184   cytokine-inducible SH2-containing protein isoform 2 ...
SOCS2                 0.150   suppressor of cytokine signaling-2 
SOCS1                 0.141   suppressor of cytokine signaling 1 
SOCS6                 0.092   suppressor of cytokine signaling 6 
SOCS7                 0.090   suppressor of cytokine signaling 7 
SOCS4                 0.055   suppressor of cytokine signaling 4 
SOCS4                 0.055   suppressor of cytokine signaling 4 
PIK3R1                0.051   phosphoinositide-3-kinase, regulatory subunit 1 (alp...
PIK3R1                0.051   phosphoinositide-3-kinase, regulatory subunit 1 (alp...
PIK3R1                0.051   phosphoinositide-3-kinase, regulatory subunit 1 (alp...
PIK3R3                0.051   phosphoinositide-3-kinase, regulatory subunit 3 (p5...
PIK3R3                0.051   phosphoinositide-3-kinase, regulatory subunit 3 (p5...
SOCS5                 0.048   suppressor of cytokine signaling 5 
SOCS5                 0.048   suppressor of cytokine signaling 5 
PIK3R2                0.039   phosphoinositide-3-kinase, regulatory subunit 2 (beta...
ZC3H4                 0.037   zinc finger CCCH-type containing 4 
SNRPA                 0.035   small nuclear ribonucleoprotein polypeptide A 
ESPN                  0.035   espin 
SHB                   0.035   Src homology 2 domain containing adaptor protein B ...
FRK                   0.032   fyn-related kinase 
CTNND2                0.032   catenin (cadherin-associated protein), delta 2 (neur...
PCLO                  0.032   piccolo isoform 2 
PCLO                  0.032   piccolo isoform 1 
DAPP1                 0.032   dual adaptor of phosphotyrosine and 3-phosphoinosit...
PTPN11                0.032   protein tyrosine phosphatase, non-receptor type 11 [...
NCCRP1                0.032   non-specific cytotoxic cell receptor protein 1 homol...
CRK                   0.030   v-crk sarcoma virus CT10 oncogene homolog isoform a ...
CRK                   0.030   v-crk sarcoma virus CT10 oncogene homolog isoform b ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press